Clone Sequence Records
BO04271.3prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-01
> BO04271.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAAG
GTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCCA
CACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTTA
AATGGTCTGTCCAGAGCTCTACTATCGTCGACGAGTCCGTAGGAGCTGTT
CCCGCCATTGCCACCACCTCCGGATCCGGATGGGGATGAGGAGGCCATGG
CATCGGCCCTCAGGTCTTGCAAATGATCAAAATTCATGGATGCCTCCGAG
TGGTAATCGCTGGGCGAGATCTGATGCAGCTGCTGGTGATAAGTACTATG
GTGATGATGATGAGTGTCACTGGTTTCCTGCGTTGTTGGCGCATCAACTT
CCATGTCGACTGATAACT
BO04271.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 789 | CG7945-RA | 1..786 | 804..19 | 3930 | 100 | Minus |
CG7945-PB | 747 | CG7945-RB | 205..744 | 558..19 | 2700 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1340 | 804..19 | 3930 | 100 | Minus |
CG7945-RB | 1275 | CG7945-RB | 625..1164 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 19..394 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 15522968..15523215 | 557..804 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522504 | 393..537 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:33:13 has no hits.
BO04271.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:32 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:33 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:16 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 11..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:29 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 11..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:29 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521817..15522195 | 11..392 | 98 | <- | Plus |
3L | 15522360..15522502 | 393..535 | 100 | <- | Plus |
3L | 15522560..15522580 | 536..556 | 100 | <- | Plus |
3L | 15522968..15523221 | 557..812 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:16 Download gff for
BO04271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514917..15515295 | 11..392 | 98 | <- | Plus |
arm_3L | 15515460..15515602 | 393..535 | 100 | <- | Plus |
arm_3L | 15515660..15515680 | 536..556 | 100 | <- | Plus |
arm_3L | 15516068..15516321 | 557..812 | 98 | | Plus |
BO04271.5prime Sequence
818 bp (737 high quality bases) assembled on 2005-11-29
> BO04271.5prime
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATGCAAGCTTTCTAGACC
BO04271.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 789 | CG7945-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG7945-PB | 747 | CG7945-RB | 205..744 | 263..802 | 2700 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..426 | 377..802 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1340 | 17..802 | 3930 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 625..1164 | 263..802 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 802..427 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 15522968..15523215 | 264..17 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 428..284 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:56:56 has no hits.
BO04271.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:33 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:35 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:16 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:25 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 549..1345 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:25 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521817..15522195 | 429..810 | 98 | <- | Minus |
3L | 15522360..15522502 | 286..428 | 100 | <- | Minus |
3L | 15522560..15522580 | 265..285 | 100 | <- | Minus |
3L | 15522968..15523224 | 11..264 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:16 Download gff for
BO04271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514917..15515295 | 429..810 | 98 | <- | Minus |
arm_3L | 15515460..15515602 | 286..428 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 265..285 | 100 | <- | Minus |
arm_3L | 15516068..15516324 | 11..264 | 97 | <- | Minus |
BO04271.complete Sequence
820 bp (820 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629710
> BO04271.complete
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATGCAAGCTTTCTAGACCAT
BO04271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 789 | CG7945-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG7945-RB | 747 | CG7945-PB | 205..744 | 263..802 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 555..1340 | 17..802 | 3930 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 625..1164 | 263..802 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 802..427 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 15522968..15523215 | 264..17 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 428..284 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:07:35 has no hits.
BO04271.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:38 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:58 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 504..1300 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:02 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 555..1340 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:38 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 504..1300 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:54 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 555..1340 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:54 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15522968..15523215 | 17..264 | 100 | | Minus |
3L | 15521820..15522195 | 429..804 | 99 | <- | Minus |
3L | 15522360..15522502 | 286..428 | 100 | <- | Minus |
3L | 15522560..15522580 | 265..285 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:02 Download gff for
BO04271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15516068..15516315 | 17..264 | 100 | | Minus |
arm_3L | 15514920..15515295 | 429..804 | 99 | <- | Minus |
arm_3L | 15515460..15515602 | 286..428 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 265..285 | 100 | <- | Minus |
BO04271.pep Sequence
Translation from 16 to 820
> BO04271.pep
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSHASFLDH
BO04271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PA | 262 | CG7945-PA | 1..262 | 1..262 | 1346 | 100 | Plus |
CG7945-PB | 248 | CG7945-PB | 68..248 | 82..262 | 910 | 100 | Plus |