Clone BO04271 Report

Search the DGRC for BO04271

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG7945-RA
Protein status:BO04271.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO04271.3prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-01

> BO04271.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAAG
GTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCCA
CACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTTA
AATGGTCTGTCCAGAGCTCTACTATCGTCGACGAGTCCGTAGGAGCTGTT
CCCGCCATTGCCACCACCTCCGGATCCGGATGGGGATGAGGAGGCCATGG
CATCGGCCCTCAGGTCTTGCAAATGATCAAAATTCATGGATGCCTCCGAG
TGGTAATCGCTGGGCGAGATCTGATGCAGCTGCTGGTGATAAGTACTATG
GTGATGATGATGAGTGTCACTGGTTTCCTGCGTTGTTGGCGCATCAACTT
CCATGTCGACTGATAACT

BO04271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 789 CG7945-RA 1..786 804..19 3930 100 Minus
CG7945-PB 747 CG7945-RB 205..744 558..19 2700 100 Minus
CG7945-PC 429 CG7945-RC 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1340 804..19 3930 100 Minus
CG7945-RB 1275 CG7945-RB 625..1164 558..19 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 19..394 1880 100 Plus
3L 28110227 3L 15522968..15523215 557..804 1240 100 Plus
3L 28110227 3L 15522360..15522504 393..537 725 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:33:13 has no hits.

BO04271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:32 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 15..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:33 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 15..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:16 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 11..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:29 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 11..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:29 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 11..392 98 <- Plus
3L 15522360..15522502 393..535 100 <- Plus
3L 15522560..15522580 536..556 100 <- Plus
3L 15522968..15523221 557..812 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:16 Download gff for BO04271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514917..15515295 11..392 98 <- Plus
arm_3L 15515460..15515602 393..535 100 <- Plus
arm_3L 15515660..15515680 536..556 100 <- Plus
arm_3L 15516068..15516321 557..812 98   Plus

BO04271.5prime Sequence

818 bp (737 high quality bases) assembled on 2005-11-29

> BO04271.5prime
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATGCAAGCTTTCTAGACC

BO04271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 789 CG7945-RA 1..786 17..802 3930 100 Plus
CG7945-PB 747 CG7945-RB 205..744 263..802 2700 100 Plus
CG7945-PC 429 CG7945-RC 1..426 377..802 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1340 17..802 3930 100 Plus
CG7945-RB 1275 CG7945-RB 625..1164 263..802 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 802..427 1880 100 Minus
3L 28110227 3L 15522968..15523215 264..17 1240 100 Minus
3L 28110227 3L 15522360..15522504 428..284 725 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:56:56 has no hits.

BO04271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:33 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:35 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:16 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 9..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:25 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 9..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:25 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 429..810 98 <- Minus
3L 15522360..15522502 286..428 100 <- Minus
3L 15522560..15522580 265..285 100 <- Minus
3L 15522968..15523224 11..264 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:16 Download gff for BO04271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514917..15515295 429..810 98 <- Minus
arm_3L 15515460..15515602 286..428 100 <- Minus
arm_3L 15515660..15515680 265..285 100 <- Minus
arm_3L 15516068..15516324 11..264 97 <- Minus

BO04271.complete Sequence

820 bp (820 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629710

> BO04271.complete
GAAGTTATCAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCA
GTGACACTCATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAG
ATCTCGCCCAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTT
GCAAGACCTGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCG
GAGGTGGTGGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGT
AGAGCTCTGGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAG
TTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAA
GAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCC
ATGCAAGCTTTCTAGACCAT

BO04271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 789 CG7945-PA 1..786 17..802 3930 100 Plus
CG7945-RB 747 CG7945-PB 205..744 263..802 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1340 17..802 3930 100 Plus
CG7945-RB 1275 CG7945-RB 625..1164 263..802 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 802..427 1880 100 Minus
3L 28110227 3L 15522968..15523215 264..17 1240 100 Minus
3L 28110227 3L 15522360..15522504 428..284 725 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:07:35 has no hits.

BO04271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:38 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:58 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 504..1300 9..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:02 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 555..1340 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:38 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 504..1300 9..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:54 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 555..1340 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:54 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15522968..15523215 17..264 100   Minus
3L 15521820..15522195 429..804 99 <- Minus
3L 15522360..15522502 286..428 100 <- Minus
3L 15522560..15522580 265..285 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:02 Download gff for BO04271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15516068..15516315 17..264 100   Minus
arm_3L 15514920..15515295 429..804 99 <- Minus
arm_3L 15515460..15515602 286..428 100 <- Minus
arm_3L 15515660..15515680 265..285 100 <- Minus

BO04271.pep Sequence

Translation from 16 to 820

> BO04271.pep
MEVDAPTTQETSDTHHHHHSTYHQQLHQISPSDYHSEASMNFDHLQDLRA
DAMASSSPSGSGGGGNGGNSSYGLVDDSRALDRPFNASERFVTILDSLDA
RVEKLRKDALNLQEKKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRV
SSRLATVELRVRTVRDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYL
NACCSSSMDPSGHMDTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQA
LMAYLNKQTVSHASFLDH

BO04271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 262 CG7945-PA 1..262 1..262 1346 100 Plus
CG7945-PB 248 CG7945-PB 68..248 82..262 910 100 Plus