Clone Sequence Records
BO04273.3prime Sequence
876 bp (809 high quality bases) assembled on 2005-12-01
> BO04273.3prime
ATGGTCTAGAAAGCTTGCGACGGATTCTACAACCAAATTGGTCTTAAAAA
TAGTGCTATCATTGTGCAAGGCCTCTAGTTTTGTAATTTCAAATGACTGG
TAAATCTCGCGGAAGTCCATAATGTTTCGTGGGTCGCTCTCCATCCAAAA
GCGGTCAAACTCGAAGAACAGATAGCAGTACAACTTGTGGAAATCCTCCA
CGGTGCTAAAGTCCTGTCTGTGCTGCACCACCAAATTGTAGAAGTGGGTT
TTGGCGGCGCCCGTTTTCACTAGATTGAAGGCCATGGAGGTGAGGTTAAT
GCCGACAATGGCGTAGGTGTAACCCAGGGTGGGATGCATCGAGTGCAGCA
GGACATGTTTGGCGGCGTCGTTATAGGCAGTTGCAAAGTAGAGAAGGTTC
TCTAGCCCGAGCATGCCCATTCCCCGAAAGTCCGTCTTCGGATCGTCGCC
CTGGAAGCCGATGTCCTGCCACTGTTTGGTCACGCGACCGGTGAGGGGAG
TGTCTGGCATCAGCAATTGCCACAATCGCAACAGCTTTTGCTCGTGGTCG
AGGTTATCCGAGTCGTATTTCTCCGCCCGCAGCTGTTCCACCTGATGCAT
CAGTCTGCGGTAGCCCCAGATACTCGTCACGCATGTGCCGAAGAGCCGAG
CAAAATCCGGGTGGACATTGTTCTTGATGCGTTTCGCCTGCATCACAATG
CGAGCAGCGCGAGGAGCGAAATCCAGCAGCTCCGCGTTGCTCACATATGG
CGCCGCCTCATCAAGGTCAAGTACAAGTCGTCGTATCTGCGGCCTTTTGG
ACAATGTGAGGGACCTTTCCACCTGGCTGGTTCGGCTGGCTCCGGCCTTC
GCTCCATAGCAAATCCTCTGGAGCTC
BO04273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-PA | 951 | CG10068-RA | 91..948 | 876..19 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-RA | 1657 | CG10068-RA | 296..1153 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7126775..7127473 | 19..717 | 3480 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7127573..7127732 | 717..876 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:43:13 has no hits.
BO04273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:36 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-PA | 91..951 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:39 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-PA | 91..951 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:23 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 296..1156 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:10 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 296..1156 | 15..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:10 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7126771..7127472 | 15..716 | 99 | <- | Plus |
| 3R | 7127573..7127732 | 717..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:23 Download gff for
BO04273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2952493..2953194 | 15..716 | 99 | <- | Plus |
| arm_3R | 2953295..2953454 | 717..876 | 100 | | Plus |
BO04273.5prime Sequence
837 bp (743 high quality bases) assembled on 2005-12-01
> BO04273.5prime
GAAGTTATCAGTCGACATGTTTATTCTCGACCGAATACTGCCTTTTATTT
TTAGCTATATAAGGCCCTTTATAAAGTGGTTCCTGCACGCCTTCACCAGG
CTCTCGGAGCTCCAGAGGATTTGCTATGGAGCGAAGGCCGGAGCCAGCCG
AACCAGCCAGGTGGAAAGGTCCCTCACATTGTCCAAAAGGCCGCAGATAC
GACGACTTGTACTTGACCTTGATGAGGCGGCGCCATATGTGAGCAACGCG
GAGCTGCTGGATTTCGCTCCTCGCGCTGCTCGCATTGTGATGCAGGCGAA
ACGCATCAAGAACAATGTCCACCCGGATTTTGCTCGGCTCTTCGGCACAT
GCGTGACGAGTATCTGGGGCTACCGCAGACTGATGCATCAGGTGGAACAG
CTGCGGGCGGAGAAATACGACTCGGATAACCTCGACCACGAGCAAAAGCT
GTTGCGATTGTGGCAATTGCTGATGCCAGACACTCCCCTCACCGGTCGCG
TGACCAAACAGTGGCAGGACATCGGCTTCCAGGGCGACGATCCGAAGACG
GACTTTCGGGGAATGGGCATGCTCGGGCTAGAGAACCTTCTCTACTTTGC
AACTGCCTATAACGACGCCGCCAAACATGTCCTGCTGCACTCGATGCATC
CCACCCTGGGTTACACCTACGCCATTGTCGGCATTAACCTCACCTCCATG
GCCTTCAATCTAGTGAAAACGGGCGCCGCCAAAACCCACTTCTACAATTT
GGTGGTGCAGCACAGACAGGACTTTAGCACCGTGGAGGATTTCCACAAGT
TGTACTGCTATCTGTTCTTCGAGTTTGACCGCTTTTG
BO04273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-PA | 951 | CG10068-RA | 1..821 | 17..837 | 4080 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-RA | 1657 | CG10068-RA | 206..1026 | 17..837 | 4090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7126902..7127473 | 837..266 | 2845 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7127573..7127822 | 266..17 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:03:54 has no hits.
BO04273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:37 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:40 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:33 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 200..1026 | 10..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:56 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 200..1026 | 10..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:56 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7126902..7127472 | 267..837 | 99 | <- | Minus |
| 3R | 7127573..7127828 | 10..266 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:33 Download gff for
BO04273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2952624..2953194 | 267..837 | 99 | <- | Minus |
| arm_3R | 2953295..2953550 | 10..266 | 98 | | Minus |
BO04273.complete Sequence
982 bp (982 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629711
> BO04273.complete
GAAGTTATCAGTCGACATGTTTATTCTCGACCGAATACTGCCTTTTATTT
TTAGCTATATAAGGCCCTTTATAAAGTGGTTCCTGCACGCCTTCACCAGG
CTCTCGGAGCTCCAGAGGATTTGCTATGGAGCGAAGGCCGGAGCCAGCCG
AACCAGCCAGGTGGAAAGGTCCCTCACATTGTCCAAAAGGCCGCAGATAC
GACGACTTGTACTTGACCTTGATGAGGCGGCGCCATATGTGAGCAACGCG
GAGCTGCTGGATTTCGCTCCTCGCGCTGCTCGCATTGTGATGCAGGCGAA
ACGCATCAAGAACAATGTCCACCCGGATTTTGCTCGGCTCTTCGGCACAT
GCGTGACGAGTATCTGGGGCTACCGCAGACTGATGCATCAGGTGGAACAG
CTGCGGGCGGAGAAATACGACTCGGATAACCTCGACCACGAGCAAAAGCT
GTTGCGATTGTGGCAATTGCTGATGCCAGACACTCCCCTCACCGGTCGCG
TGACCAAACAGTGGCAGGACATCGGCTTCCAGGGCGACGATCCGAAGACG
GACTTTCGGGGAATGGGCATGCTCGGGCTAGAGAACCTTCTCTACTTTGC
AACTGCCTATAACGACGCCGCCAAACATGTCCTGCTGCACTCGATGCATC
CCACCCTGGGTTACACCTACGCCATTGTCGGCATTAACCTCACCTCCATG
GCCTTCAATCTAGTGAAAACGGGCGCCGCCAAAACCCACTTCTACAATTT
GGTGGTGCAGCACAGACAGGACTTTAGCACCGTGGAGGATTTCCACAAGT
TGTACTGCTATCTGTTCTTCGAGTTTGACCGCTTTTGGATGGAGAGCGAC
CCACGAAACATTATGGACTTCCGCGAGATTTACCAGTCATTTGAAATTAC
AAAACTAGAGGCCTTGCACAATGATAGCACTATTTTTAAGACCAATTTGG
TTGTAGAATCCGTCGCAAGCTTTCTAGACCAT
BO04273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-RA | 951 | CG10068-PA | 1..948 | 17..964 | 4725 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-RA | 1657 | CG10068-RA | 206..1153 | 17..964 | 4725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7126775..7127473 | 964..266 | 3480 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7127573..7127822 | 266..17 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:15:54 has no hits.
BO04273.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:39 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:22 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 202..1158 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:15 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 212..1153 | 23..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:40 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 202..1158 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:10 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10068-RA | 212..1153 | 23..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:10 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7126773..7127472 | 267..966 | 99 | <- | Minus |
| 3R | 7127573..7127816 | 23..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:15 Download gff for
BO04273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2953295..2953538 | 23..266 | 100 | | Minus |
| arm_3R | 2952495..2953194 | 267..966 | 99 | <- | Minus |
BO04273.pep Sequence
Translation from 16 to 982
> BO04273.pep
MFILDRILPFIFSYIRPFIKWFLHAFTRLSELQRICYGAKAGASRTSQVE
RSLTLSKRPQIRRLVLDLDEAAPYVSNAELLDFAPRAARIVMQAKRIKNN
VHPDFARLFGTCVTSIWGYRRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQ
LLMPDTPLTGRVTKQWQDIGFQGDDPKTDFRGMGMLGLENLLYFATAYND
AAKHVLLHSMHPTLGYTYAIVGINLTSMAFNLVKTGAAKTHFYNLVVQHR
QDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDFREIYQSFEITKLEAL
HNDSTIFKTNLVVESVASFLDH
BO04273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10068-PA | 316 | CG10068-PA | 1..316 | 1..316 | 1662 | 100 | Plus |
