Clone BO04274 Report

Search the DGRC for BO04274

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptNipsnap-RA
Protein status:BO04274.pep: validated full length
Sequenced Size:853

Clone Sequence Records

BO04274.3prime Sequence

851 bp (850 high quality bases) assembled on 2005-12-01

> BO04274.3prime
ATGGTCTAGAAAGCTTGCTTGTGAGGGCGAGAACTCAGTGGGCGCCAGGA
CACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTCA
TCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTTG
CAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATCT
GCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGATG
GCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTCG
GTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGCG
GCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAAC
TTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGTC
TTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGGT
GCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAAT
TCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTTT
GTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTAT
GAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTCC
TTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTGA
ATCGTTGCGGCTCGGAGTGGTGGACAGAGAGCGGACAGCGTTGTTGTTGC
TTTTGCCGACGGCCAATAGATTACGTAGCTTAAGCATGTCGACTGATAAC
T

BO04274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 1..819 837..19 4095 100 Minus
CG9212-PA 822 Nipsnap-RA 1..819 837..19 4095 100 Minus
CG9212-PC 822 Nipsnap-RC 1..819 837..19 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1019 837..19 4095 100 Minus
Nipsnap-RC 1283 CG9212-RC 107..925 837..19 4095 100 Minus
Nipsnap-RA 1402 CG9212-RA 226..1044 837..19 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 308..601 1470 100 Plus
X 23542271 X 16071721..16071901 602..782 905 100 Plus
X 23542271 X 16070723..16070868 19..164 730 100 Plus
X 23542271 X 16071033..16071178 163..308 730 100 Plus
X 23542271 X 16073027..16073082 782..837 280 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:54:17 has no hits.

BO04274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:38 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PA 1..822 15..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:41 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 1..822 15..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:22 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 96..930 11..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:08 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 215..1049 11..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:08 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16070718..16070868 11..164 97 <- Plus
X 16071035..16071177 165..307 100 <- Plus
X 16071238..16071531 308..601 100 <- Plus
X 16071721..16071900 602..781 100 <- Plus
X 16073027..16073093 782..847 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:22 Download gff for BO04274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15965754..15965933 602..781 100 <- Plus
arm_X 15967060..15967126 782..847 94   Plus
arm_X 15964751..15964901 11..164 97 <- Plus
arm_X 15965068..15965210 165..307 100 <- Plus
arm_X 15965271..15965564 308..601 100 <- Plus

BO04274.5prime Sequence

851 bp (769 high quality bases) assembled on 2005-12-01

> BO04274.5prime
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGAC
C

BO04274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 1..819 17..835 4095 100 Plus
CG9212-PA 822 Nipsnap-RA 1..819 17..835 4095 100 Plus
CG9212-PC 822 Nipsnap-RC 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1019 17..835 4095 100 Plus
Nipsnap-RC 1283 CG9212-RC 107..925 17..835 4095 100 Plus
Nipsnap-RA 1402 CG9212-RA 226..1044 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 546..253 1470 100 Minus
X 23542271 X 16071721..16071901 252..72 905 100 Minus
X 23542271 X 16070723..16070868 835..690 730 100 Minus
X 23542271 X 16071033..16071178 691..546 730 100 Minus
X 23542271 X 16073027..16073082 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:04:00 has no hits.

BO04274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:39 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PA 1..822 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:43 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 1..822 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:36 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 96..930 7..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:16 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 215..1049 7..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:16 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16070718..16070868 690..843 97 <- Minus
X 16071035..16071177 547..689 100 <- Minus
X 16071238..16071531 253..546 100 <- Minus
X 16071721..16071900 73..252 100 <- Minus
X 16073027..16073093 7..72 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:36 Download gff for BO04274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964751..15964901 690..843 97 <- Minus
arm_X 15965068..15965210 547..689 100 <- Minus
arm_X 15965271..15965564 253..546 100 <- Minus
arm_X 15965754..15965933 73..252 100 <- Minus
arm_X 15967060..15967126 7..72 94   Minus

BO04274.complete Sequence

853 bp (853 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629712

> BO04274.complete
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGAC
CAT

BO04274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 822 CG9212-PF 1..819 17..835 4095 100 Plus
Nipsnap-RC 822 CG9212-PC 1..819 17..835 4095 100 Plus
Nipsnap-RA 822 CG9212-PA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1019 17..835 4095 100 Plus
Nipsnap-RC 1283 CG9212-RC 107..925 17..835 4095 100 Plus
Nipsnap-RA 1402 CG9212-RA 226..1044 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 546..253 1470 100 Minus
X 23542271 X 16071721..16071901 252..72 905 100 Minus
X 23542271 X 16070723..16070868 835..690 730 100 Minus
X 23542271 X 16071033..16071178 691..546 730 100 Minus
X 23542271 X 16073027..16073082 72..17 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:10 has no hits.

BO04274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:12 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 1..822 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:30 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 94..928 7..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:52 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 107..925 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:12 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 94..928 7..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:42 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 226..1044 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:42 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
X 16070721..16070868 690..837 98 <- Minus
X 16071035..16071177 547..689 100 <- Minus
X 16071238..16071531 253..546 100 <- Minus
X 16071721..16071900 73..252 100 <- Minus
X 16073027..16073082 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:52 Download gff for BO04274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964754..15964901 690..837 98 <- Minus
arm_X 15965068..15965210 547..689 100 <- Minus
arm_X 15965271..15965564 253..546 100 <- Minus
arm_X 15965754..15965933 73..252 100 <- Minus
arm_X 15967060..15967115 17..72 100   Minus

BO04274.pep Sequence

Translation from 16 to 853

> BO04274.pep
MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS
RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS
WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS
RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR
KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA
YTVPLIREMHCRVLAPTEFSPSQASFLDH

BO04274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-PF 273 CG9212-PF 1..273 1..273 1472 100 Plus
Nipsnap-PC 273 CG9212-PC 1..273 1..273 1472 100 Plus
Nipsnap-PA 273 CG9212-PA 1..273 1..273 1472 100 Plus
Nipsnap-PB 273 CG9212-PB 1..273 1..273 1472 100 Plus