Clone Sequence Records
BO04274.3prime Sequence
851 bp (850 high quality bases) assembled on 2005-12-01
> BO04274.3prime
ATGGTCTAGAAAGCTTGCTTGTGAGGGCGAGAACTCAGTGGGCGCCAGGA
CACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTCA
TCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTTG
CAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATCT
GCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGATG
GCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTCG
GTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGCG
GCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAAC
TTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGTC
TTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGGT
GCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAAT
TCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTTT
GTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTAT
GAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTCC
TTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTGA
ATCGTTGCGGCTCGGAGTGGTGGACAGAGAGCGGACAGCGTTGTTGTTGC
TTTTGCCGACGGCCAATAGATTACGTAGCTTAAGCATGTCGACTGATAAC
T
BO04274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 1..819 | 837..19 | 4095 | 100 | Minus |
CG9212-PA | 822 | Nipsnap-RA | 1..819 | 837..19 | 4095 | 100 | Minus |
CG9212-PC | 822 | Nipsnap-RC | 1..819 | 837..19 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1019 | 837..19 | 4095 | 100 | Minus |
Nipsnap-RC | 1283 | CG9212-RC | 107..925 | 837..19 | 4095 | 100 | Minus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1044 | 837..19 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 308..601 | 1470 | 100 | Plus |
X | 23542271 | X | 16071721..16071901 | 602..782 | 905 | 100 | Plus |
X | 23542271 | X | 16070723..16070868 | 19..164 | 730 | 100 | Plus |
X | 23542271 | X | 16071033..16071178 | 163..308 | 730 | 100 | Plus |
X | 23542271 | X | 16073027..16073082 | 782..837 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:54:17 has no hits.
BO04274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:38 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PA | 1..822 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:41 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 1..822 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:22 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 96..930 | 11..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:08 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 215..1049 | 11..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:08 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16070718..16070868 | 11..164 | 97 | <- | Plus |
X | 16071035..16071177 | 165..307 | 100 | <- | Plus |
X | 16071238..16071531 | 308..601 | 100 | <- | Plus |
X | 16071721..16071900 | 602..781 | 100 | <- | Plus |
X | 16073027..16073093 | 782..847 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:22 Download gff for
BO04274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15965754..15965933 | 602..781 | 100 | <- | Plus |
arm_X | 15967060..15967126 | 782..847 | 94 | | Plus |
arm_X | 15964751..15964901 | 11..164 | 97 | <- | Plus |
arm_X | 15965068..15965210 | 165..307 | 100 | <- | Plus |
arm_X | 15965271..15965564 | 308..601 | 100 | <- | Plus |
BO04274.5prime Sequence
851 bp (769 high quality bases) assembled on 2005-12-01
> BO04274.5prime
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGAC
C
BO04274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 1..819 | 17..835 | 4095 | 100 | Plus |
CG9212-PA | 822 | Nipsnap-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG9212-PC | 822 | Nipsnap-RC | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1019 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RC | 1283 | CG9212-RC | 107..925 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1044 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 546..253 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 252..72 | 905 | 100 | Minus |
X | 23542271 | X | 16070723..16070868 | 835..690 | 730 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 691..546 | 730 | 100 | Minus |
X | 23542271 | X | 16073027..16073082 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:04:00 has no hits.
BO04274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:39 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PA | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:43 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:36 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 96..930 | 7..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:16 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 215..1049 | 7..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:16 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16070718..16070868 | 690..843 | 97 | <- | Minus |
X | 16071035..16071177 | 547..689 | 100 | <- | Minus |
X | 16071238..16071531 | 253..546 | 100 | <- | Minus |
X | 16071721..16071900 | 73..252 | 100 | <- | Minus |
X | 16073027..16073093 | 7..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:36 Download gff for
BO04274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964751..15964901 | 690..843 | 97 | <- | Minus |
arm_X | 15965068..15965210 | 547..689 | 100 | <- | Minus |
arm_X | 15965271..15965564 | 253..546 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 73..252 | 100 | <- | Minus |
arm_X | 15967060..15967126 | 7..72 | 94 | | Minus |
BO04274.complete Sequence
853 bp (853 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629712
> BO04274.complete
GAAGTTATCAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCA
AAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAAC
GATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAAC
CAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCC
TTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAAC
TACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTG
CGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCC
TGCACCTGTGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAA
GAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTC
CAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACT
GGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCA
TACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCG
CGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCT
CGCAGATCGGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCT
CTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATG
GGATGAGTGTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCC
GTGTCCTGGCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGAC
CAT
BO04274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 822 | CG9212-PF | 1..819 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RC | 822 | CG9212-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RA | 822 | CG9212-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1019 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RC | 1283 | CG9212-RC | 107..925 | 17..835 | 4095 | 100 | Plus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1044 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 546..253 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 252..72 | 905 | 100 | Minus |
X | 23542271 | X | 16070723..16070868 | 835..690 | 730 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 691..546 | 730 | 100 | Minus |
X | 23542271 | X | 16073027..16073082 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:00:10 has no hits.
BO04274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:12 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:30 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 94..928 | 7..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:52 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 107..925 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:12 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 94..928 | 7..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:42 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 226..1044 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:42 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16070721..16070868 | 690..837 | 98 | <- | Minus |
X | 16071035..16071177 | 547..689 | 100 | <- | Minus |
X | 16071238..16071531 | 253..546 | 100 | <- | Minus |
X | 16071721..16071900 | 73..252 | 100 | <- | Minus |
X | 16073027..16073082 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:52 Download gff for
BO04274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964754..15964901 | 690..837 | 98 | <- | Minus |
arm_X | 15965068..15965210 | 547..689 | 100 | <- | Minus |
arm_X | 15965271..15965564 | 253..546 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 73..252 | 100 | <- | Minus |
arm_X | 15967060..15967115 | 17..72 | 100 | | Minus |
BO04274.pep Sequence
Translation from 16 to 853
> BO04274.pep
MLKLRNLLAVGKSNNNAVRSLSTTPSRNDSESWFSKLLVRKIEPTKESHS
RMLSDKEIIYALHTHNVRPDSMGSYLNNYKTTVALINEKKANLSCELVAS
WTVQVGDMDQCLHLWKYTGGFEKIDQAKEDLWNDPEYLSLMQERSKFLRS
RHLQYLLAFSYWPQIASRTGKNIYEMRSYRLTPGTMIEWGNNWARAINYR
KHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVA
YTVPLIREMHCRVLAPTEFSPSQASFLDH
BO04274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-PF | 273 | CG9212-PF | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PC | 273 | CG9212-PC | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PA | 273 | CG9212-PA | 1..273 | 1..273 | 1472 | 100 | Plus |
Nipsnap-PB | 273 | CG9212-PB | 1..273 | 1..273 | 1472 | 100 | Plus |