Clone Sequence Records
BO04275.3prime Sequence
879 bp (804 high quality bases) assembled on 2005-12-01
> BO04275.3prime
ATGGTCTAGAAAGCTTGCATGTCCCGAAGAGCTGCTGTCCGTAAAGTAGG
GATGCTGCATCGCCGCCTCCGCGCTAATTCGCTGATTTGGCCGGCAGATG
AGCAGCTTTTGCAGCAGGTCGCGTCCCTTGGAGTTTAGCCTAGGTACCAG
CTGACTCCACGAGGTGATGGCCGGAAAAGATGGAAGCGCCACGTAGTCGG
AGAGGTGCGAAACTCCTGGCCAGGAGTCCTCGTTGGGGGTGCCCAGCACA
CGGAAGATCTTCATCAGCTGATCGAGCACGTCAGAGCCAGGAAACAGCGG
TCGTCCAGCGTCCGCCAGTTCGGCCAAAATGCATCCAGCGGACCACATGT
CTATGCTGGTCGTATAGAGCTTGGCTCCAAATAGGACATCGGGTGGTCGG
TACCACAGGGTCACCACTTCTGCGGAGTAGCACTTCACGGGAATGCCAAA
GGCTCTAGCGAGACCAAAGTCAGCTAGCTTTAGCTCGCCGTTTTTGTTGA
TCAGCAGGTTCTGTGGTTTCAGATCGCGATGCAGGACATTATGGCTGTGG
CAGAATGCCAGTCCGCGGAGCAGTTGGAGCATAAAGCTCCTGCAGACGGC
CATGTCGATCTCCCCGTTGAGGCTGTCAAAGTACTTCTTGAGGTCCTGGT
CGCAGTGCTCGAAGACCAGGGTGAGTTTCTTGTCCGAGTGCAGGACGTCT
ATGAGGCGCACAATGTTCTTGTGCTTCAGCTCCTTCAGCAGGCAGATCTC
CCGGAGGGCAGAACTGGGCACACCCTCGTCGTCCTCGTCCAGTCGCACCC
GTTTCAGGGCCACTATTTCCATGGTGTCGCGGTTGCGACCCTTGAACACC
GTGCCGTAGGTGCCCTCCCCGATCTTCTC
BO04275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8203-PA | 885 | Cdk5-RA | 22..882 | 879..19 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk5-RA | 1604 | CG8203-RA | 137..997 | 879..19 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15570358..15570724 | 180..546 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 15570883..15571072 | 545..734 | 950 | 100 | Plus |
2R | 25286936 | 2R | 15570135..15570295 | 19..179 | 805 | 100 | Plus |
2R | 25286936 | 2R | 15571134..15571281 | 732..879 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:14:58 has no hits.
BO04275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:40 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-PA | 22..885 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:44 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8203-PA | 22..885 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:35 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 137..997 | 19..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:40 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 137..997 | 19..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:40 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15570135..15570295 | 19..179 | 100 | <- | Plus |
2R | 15570358..15570722 | 180..544 | 100 | <- | Plus |
2R | 15570883..15571070 | 545..732 | 100 | <- | Plus |
2R | 15571135..15571281 | 733..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:35 Download gff for
BO04275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11457640..11457800 | 19..179 | 100 | <- | Plus |
arm_2R | 11457863..11458227 | 180..544 | 100 | <- | Plus |
arm_2R | 11458388..11458575 | 545..732 | 100 | <- | Plus |
arm_2R | 11458640..11458786 | 733..879 | 100 | | Plus |
BO04275.5prime Sequence
889 bp (784 high quality bases) assembled on 2005-11-29
> BO04275.5prime
GAAGTTATCAGTCGACATGCAGAAGTACGATAAAATGGAGAAGATCGGGG
AGGGCACCTACGGCACGGTGTTCAAGGGTCGCAACCGCGACACCATGGAA
ATAGTGGCCCTGAAACGGGTGCGACTGGACGAGGACGACGAGGGTGTGCC
CAGTTCTGCCCTCCGGGAGATCTGCCTGCTGAAGGAGCTGAAGCACAAGA
ACATTGTGCGCCTCATAGACGTCCTGCACTCGGACAAGAAACTCACCCTG
GTCTTCGAGCACTGCGACCAGGACCTCAAGAAGTACTTTGACAGCCTCAA
CGGGGAGATCGACATGGCCGTCTGCAGGAGCTTTATGCTCCAACTGCTCC
GCGGACTGGCATTCTGCCACAGCCATAATGTCCTGCATCGCGATCTGAAA
CCACAGAACCTGCTGATCAACAAAAACGGCGAGCTAAAGCTAGCTGACTT
TGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCCGCAGAAG
TGGTGACCCTGTGGTACCGACCACCCGATGTCCTATTTGGAGCCAAGCTC
TATACGACCAGCATAGACATGTGGTCCGCTGGATGCATTTTGGCCGAACT
GGCGGACGCTGGACGACCGCTGTTTCCTGGCTCTGACGTGCTCGATCAGC
TGATGAAGATCTTCCGTGTGCTGGGCACCCCCAACGAGGACTCCTGGCCA
GGAGTTTCGCACCTCTCCGACTACGTGGCGCTTCCATCTTTTCCGGCCAT
CACCTCGTGGAGTCAGCTGGTACCTAGGCTAAACTCCCAGGGACGCGACC
TGCTGCAAAAGCTGCTCATCTGCCGGCCAAATCAGCGAATTAGCGCGGAG
GCGGCGATGCAGCATCCCTACTTTACGGACAGCAGCTCT
BO04275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8203-PA | 885 | Cdk5-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk5-RA | 1604 | CG8203-RA | 116..988 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15570358..15570724 | 737..371 | 1835 | 100 | Minus |
2R | 25286936 | 2R | 15570883..15571072 | 372..183 | 950 | 100 | Minus |
2R | 25286936 | 2R | 15571134..15571302 | 185..17 | 845 | 100 | Minus |
2R | 25286936 | 2R | 15570144..15570295 | 889..738 | 745 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:17:53 has no hits.
BO04275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:41 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:46 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8203-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:50 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 109..988 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:23 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 109..988 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:23 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15570144..15570295 | 738..889 | 99 | <- | Minus |
2R | 15570358..15570722 | 373..737 | 100 | <- | Minus |
2R | 15570883..15571070 | 185..372 | 100 | <- | Minus |
2R | 15571135..15571306 | 11..184 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:50 Download gff for
BO04275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11457649..11457800 | 738..889 | 99 | <- | Minus |
arm_2R | 11457863..11458227 | 373..737 | 100 | <- | Minus |
arm_2R | 11458388..11458575 | 185..372 | 100 | <- | Minus |
arm_2R | 11458640..11458811 | 11..184 | 97 | <- | Minus |
BO04275.complete Sequence
916 bp (916 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629713
> BO04275.complete
GAAGTTATCAGTCGACATGCAGAAGTACGATAAAATGGAGAAGATCGGGG
AGGGCACCTACGGCACGGTGTTCAAGGGTCGCAACCGCGACACCATGGAA
ATAGTGGCCCTGAAACGGGTGCGACTGGACGAGGACGACGAGGGTGTGCC
CAGTTCTGCCCTCCGGGAGATCTGCCTGCTGAAGGAGCTGAAGCACAAGA
ACATTGTGCGCCTCATAGACGTCCTGCACTCGGACAAGAAACTCACCCTG
GTCTTCGAGCACTGCGACCAGGACCTCAAGAAGTACTTTGACAGCCTCAA
CGGGGAGATCGACATGGCCGTCTGCAGGAGCTTTATGCTCCAACTGCTCC
GCGGACTGGCATTCTGCCACAGCCATAATGTCCTGCATCGCGATCTGAAA
CCACAGAACCTGCTGATCAACAAAAACGGCGAGCTAAAGCTAGCTGACTT
TGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCCGCAGAAG
TGGTGACCCTGTGGTACCGACCACCCGATGTCCTATTTGGAGCCAAGCTC
TATACGACCAGCATAGACATGTGGTCCGCTGGATGCATTTTGGCCGAACT
GGCGGACGCTGGACGACCGCTGTTTCCTGGCTCTGACGTGCTCGATCAGC
TGATGAAGATCTTCCGTGTGCTGGGCACCCCCAACGAGGACTCCTGGCCA
GGAGTTTCGCACCTCTCCGACTACGTGGCGCTTCCATCTTTTCCGGCCAT
CACCTCGTGGAGTCAGCTGGTACCTAGGCTAAACTCCAAGGGACGCGACC
TGCTGCAAAAGCTGCTCATCTGCCGGCCAAATCAGCGAATTAGCGCGGAG
GCGGCGATGCAGCATCCCTACTTTACGGACAGCAGCTCTTCGGGACATGC
AAGCTTTCTAGACCAT
BO04275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk5-RA | 885 | CG8203-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk5-RA | 1604 | CG8203-RA | 116..997 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15570358..15570724 | 737..371 | 1835 | 100 | Minus |
2R | 25286936 | 2R | 15570883..15571072 | 372..183 | 950 | 100 | Minus |
2R | 25286936 | 2R | 15571134..15571302 | 185..17 | 845 | 100 | Minus |
2R | 25286936 | 2R | 15570135..15570295 | 898..738 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:31 has no hits.
BO04275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:41 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:24 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 105..993 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:39 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 116..997 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:41 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 105..993 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:43 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk5-RA | 116..997 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:43 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15570883..15571070 | 185..372 | 100 | <- | Minus |
2R | 15571135..15571302 | 17..184 | 100 | | Minus |
2R | 15570132..15570295 | 738..900 | 98 | <- | Minus |
2R | 15570358..15570722 | 373..737 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:39 Download gff for
BO04275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11458388..11458575 | 185..372 | 100 | <- | Minus |
arm_2R | 11458640..11458807 | 17..184 | 100 | | Minus |
arm_2R | 11457637..11457800 | 738..900 | 98 | <- | Minus |
arm_2R | 11457863..11458227 | 373..737 | 100 | <- | Minus |
BO04275.pep Sequence
Translation from 16 to 916
> BO04275.pep
MQKYDKMEKIGEGTYGTVFKGRNRDTMEIVALKRVRLDEDDEGVPSSALR
EICLLKELKHKNIVRLIDVLHSDKKLTLVFEHCDQDLKKYFDSLNGEIDM
AVCRSFMLQLLRGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARA
FGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILAELADAGR
PLFPGSDVLDQLMKIFRVLGTPNEDSWPGVSHLSDYVALPSFPAITSWSQ
LVPRLNSKGRDLLQKLLICRPNQRISAEAAMQHPYFTDSSSSGHASFLDH
BO04275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk5-PA | 294 | CG8203-PA | 1..294 | 1..294 | 1543 | 100 | Plus |
Cdk1-PA | 297 | CG5363-PA | 1..292 | 1..291 | 799 | 52.6 | Plus |
Cdk2-PC | 314 | CG10498-PC | 5..297 | 1..296 | 735 | 47 | Plus |
Cdk2-PB | 314 | CG10498-PB | 5..297 | 1..296 | 735 | 47 | Plus |
Cdk2-PA | 314 | CG10498-PA | 5..297 | 1..296 | 735 | 47 | Plus |