Clone BO04275 Report

Search the DGRC for BO04275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCdk5-RA
Protein status:BO04275.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO04275.3prime Sequence

879 bp (804 high quality bases) assembled on 2005-12-01

> BO04275.3prime
ATGGTCTAGAAAGCTTGCATGTCCCGAAGAGCTGCTGTCCGTAAAGTAGG
GATGCTGCATCGCCGCCTCCGCGCTAATTCGCTGATTTGGCCGGCAGATG
AGCAGCTTTTGCAGCAGGTCGCGTCCCTTGGAGTTTAGCCTAGGTACCAG
CTGACTCCACGAGGTGATGGCCGGAAAAGATGGAAGCGCCACGTAGTCGG
AGAGGTGCGAAACTCCTGGCCAGGAGTCCTCGTTGGGGGTGCCCAGCACA
CGGAAGATCTTCATCAGCTGATCGAGCACGTCAGAGCCAGGAAACAGCGG
TCGTCCAGCGTCCGCCAGTTCGGCCAAAATGCATCCAGCGGACCACATGT
CTATGCTGGTCGTATAGAGCTTGGCTCCAAATAGGACATCGGGTGGTCGG
TACCACAGGGTCACCACTTCTGCGGAGTAGCACTTCACGGGAATGCCAAA
GGCTCTAGCGAGACCAAAGTCAGCTAGCTTTAGCTCGCCGTTTTTGTTGA
TCAGCAGGTTCTGTGGTTTCAGATCGCGATGCAGGACATTATGGCTGTGG
CAGAATGCCAGTCCGCGGAGCAGTTGGAGCATAAAGCTCCTGCAGACGGC
CATGTCGATCTCCCCGTTGAGGCTGTCAAAGTACTTCTTGAGGTCCTGGT
CGCAGTGCTCGAAGACCAGGGTGAGTTTCTTGTCCGAGTGCAGGACGTCT
ATGAGGCGCACAATGTTCTTGTGCTTCAGCTCCTTCAGCAGGCAGATCTC
CCGGAGGGCAGAACTGGGCACACCCTCGTCGTCCTCGTCCAGTCGCACCC
GTTTCAGGGCCACTATTTCCATGGTGTCGCGGTTGCGACCCTTGAACACC
GTGCCGTAGGTGCCCTCCCCGATCTTCTC

BO04275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8203-PA 885 Cdk5-RA 22..882 879..19 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk5-RA 1604 CG8203-RA 137..997 879..19 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15570358..15570724 180..546 1835 100 Plus
2R 25286936 2R 15570883..15571072 545..734 950 100 Plus
2R 25286936 2R 15570135..15570295 19..179 805 100 Plus
2R 25286936 2R 15571134..15571281 732..879 740 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:14:58 has no hits.

BO04275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:40 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-PA 22..885 16..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:44 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8203-PA 22..885 16..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:35 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 137..997 19..879 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:40 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 137..997 19..879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:40 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15570135..15570295 19..179 100 <- Plus
2R 15570358..15570722 180..544 100 <- Plus
2R 15570883..15571070 545..732 100 <- Plus
2R 15571135..15571281 733..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:35 Download gff for BO04275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11457640..11457800 19..179 100 <- Plus
arm_2R 11457863..11458227 180..544 100 <- Plus
arm_2R 11458388..11458575 545..732 100 <- Plus
arm_2R 11458640..11458786 733..879 100   Plus

BO04275.5prime Sequence

889 bp (784 high quality bases) assembled on 2005-11-29

> BO04275.5prime
GAAGTTATCAGTCGACATGCAGAAGTACGATAAAATGGAGAAGATCGGGG
AGGGCACCTACGGCACGGTGTTCAAGGGTCGCAACCGCGACACCATGGAA
ATAGTGGCCCTGAAACGGGTGCGACTGGACGAGGACGACGAGGGTGTGCC
CAGTTCTGCCCTCCGGGAGATCTGCCTGCTGAAGGAGCTGAAGCACAAGA
ACATTGTGCGCCTCATAGACGTCCTGCACTCGGACAAGAAACTCACCCTG
GTCTTCGAGCACTGCGACCAGGACCTCAAGAAGTACTTTGACAGCCTCAA
CGGGGAGATCGACATGGCCGTCTGCAGGAGCTTTATGCTCCAACTGCTCC
GCGGACTGGCATTCTGCCACAGCCATAATGTCCTGCATCGCGATCTGAAA
CCACAGAACCTGCTGATCAACAAAAACGGCGAGCTAAAGCTAGCTGACTT
TGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCCGCAGAAG
TGGTGACCCTGTGGTACCGACCACCCGATGTCCTATTTGGAGCCAAGCTC
TATACGACCAGCATAGACATGTGGTCCGCTGGATGCATTTTGGCCGAACT
GGCGGACGCTGGACGACCGCTGTTTCCTGGCTCTGACGTGCTCGATCAGC
TGATGAAGATCTTCCGTGTGCTGGGCACCCCCAACGAGGACTCCTGGCCA
GGAGTTTCGCACCTCTCCGACTACGTGGCGCTTCCATCTTTTCCGGCCAT
CACCTCGTGGAGTCAGCTGGTACCTAGGCTAAACTCCCAGGGACGCGACC
TGCTGCAAAAGCTGCTCATCTGCCGGCCAAATCAGCGAATTAGCGCGGAG
GCGGCGATGCAGCATCCCTACTTTACGGACAGCAGCTCT

BO04275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8203-PA 885 Cdk5-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk5-RA 1604 CG8203-RA 116..988 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15570358..15570724 737..371 1835 100 Minus
2R 25286936 2R 15570883..15571072 372..183 950 100 Minus
2R 25286936 2R 15571134..15571302 185..17 845 100 Minus
2R 25286936 2R 15570144..15570295 889..738 745 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 13:17:53 has no hits.

BO04275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:41 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:46 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8203-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:50 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 109..988 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:23 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 109..988 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:23 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15570144..15570295 738..889 99 <- Minus
2R 15570358..15570722 373..737 100 <- Minus
2R 15570883..15571070 185..372 100 <- Minus
2R 15571135..15571306 11..184 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:50 Download gff for BO04275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11457649..11457800 738..889 99 <- Minus
arm_2R 11457863..11458227 373..737 100 <- Minus
arm_2R 11458388..11458575 185..372 100 <- Minus
arm_2R 11458640..11458811 11..184 97 <- Minus

BO04275.complete Sequence

916 bp (916 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629713

> BO04275.complete
GAAGTTATCAGTCGACATGCAGAAGTACGATAAAATGGAGAAGATCGGGG
AGGGCACCTACGGCACGGTGTTCAAGGGTCGCAACCGCGACACCATGGAA
ATAGTGGCCCTGAAACGGGTGCGACTGGACGAGGACGACGAGGGTGTGCC
CAGTTCTGCCCTCCGGGAGATCTGCCTGCTGAAGGAGCTGAAGCACAAGA
ACATTGTGCGCCTCATAGACGTCCTGCACTCGGACAAGAAACTCACCCTG
GTCTTCGAGCACTGCGACCAGGACCTCAAGAAGTACTTTGACAGCCTCAA
CGGGGAGATCGACATGGCCGTCTGCAGGAGCTTTATGCTCCAACTGCTCC
GCGGACTGGCATTCTGCCACAGCCATAATGTCCTGCATCGCGATCTGAAA
CCACAGAACCTGCTGATCAACAAAAACGGCGAGCTAAAGCTAGCTGACTT
TGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCCGCAGAAG
TGGTGACCCTGTGGTACCGACCACCCGATGTCCTATTTGGAGCCAAGCTC
TATACGACCAGCATAGACATGTGGTCCGCTGGATGCATTTTGGCCGAACT
GGCGGACGCTGGACGACCGCTGTTTCCTGGCTCTGACGTGCTCGATCAGC
TGATGAAGATCTTCCGTGTGCTGGGCACCCCCAACGAGGACTCCTGGCCA
GGAGTTTCGCACCTCTCCGACTACGTGGCGCTTCCATCTTTTCCGGCCAT
CACCTCGTGGAGTCAGCTGGTACCTAGGCTAAACTCCAAGGGACGCGACC
TGCTGCAAAAGCTGCTCATCTGCCGGCCAAATCAGCGAATTAGCGCGGAG
GCGGCGATGCAGCATCCCTACTTTACGGACAGCAGCTCTTCGGGACATGC
AAGCTTTCTAGACCAT

BO04275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk5-RA 885 CG8203-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk5-RA 1604 CG8203-RA 116..997 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15570358..15570724 737..371 1835 100 Minus
2R 25286936 2R 15570883..15571072 372..183 950 100 Minus
2R 25286936 2R 15571134..15571302 185..17 845 100 Minus
2R 25286936 2R 15570135..15570295 898..738 805 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:03:31 has no hits.

BO04275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:41 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:24 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 105..993 9..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:39 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 116..997 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:41 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 105..993 9..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:43 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk5-RA 116..997 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:43 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15570883..15571070 185..372 100 <- Minus
2R 15571135..15571302 17..184 100   Minus
2R 15570132..15570295 738..900 98 <- Minus
2R 15570358..15570722 373..737 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:39 Download gff for BO04275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11458388..11458575 185..372 100 <- Minus
arm_2R 11458640..11458807 17..184 100   Minus
arm_2R 11457637..11457800 738..900 98 <- Minus
arm_2R 11457863..11458227 373..737 100 <- Minus

BO04275.pep Sequence

Translation from 16 to 916

> BO04275.pep
MQKYDKMEKIGEGTYGTVFKGRNRDTMEIVALKRVRLDEDDEGVPSSALR
EICLLKELKHKNIVRLIDVLHSDKKLTLVFEHCDQDLKKYFDSLNGEIDM
AVCRSFMLQLLRGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARA
FGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILAELADAGR
PLFPGSDVLDQLMKIFRVLGTPNEDSWPGVSHLSDYVALPSFPAITSWSQ
LVPRLNSKGRDLLQKLLICRPNQRISAEAAMQHPYFTDSSSSGHASFLDH

BO04275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk5-PA 294 CG8203-PA 1..294 1..294 1543 100 Plus
Cdk1-PA 297 CG5363-PA 1..292 1..291 799 52.6 Plus
Cdk2-PC 314 CG10498-PC 5..297 1..296 735 47 Plus
Cdk2-PB 314 CG10498-PB 5..297 1..296 735 47 Plus
Cdk2-PA 314 CG10498-PA 5..297 1..296 735 47 Plus