Clone BO04276 Report

Search the DGRC for BO04276

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG4570-RA
Protein status:BO04276.pep: validated full length
Sequenced Size:859

Clone Sequence Records

BO04276.3prime Sequence

850 bp (849 high quality bases) assembled on 2005-12-01

> BO04276.3prime
ATGGTCTAGAAAGCTTGCGCAGAACTCGGTCTGATCCCCGCCGTTGCGGA
GGACCGCTGAGACCCGCCACGTCATCGACTCGTAGAGCATCTCAATTTTG
TCCACCATGTCCTGGTCGCTGTGCCAGACGTCGTACAAGACGGCTCGAAA
CTCGCTGACATTTTTGGGCGCCTGATTCTGAATCCTCGGCTGGATGATGG
CCATCAATTGCTCGAGGAGATTGAGGTCATTGCAGACACTGCCCTCCGGT
CCCATCAGCGAGTCAAGGAAGATCTCCTTTGGCGGCGTTGATTCGTCGAC
GAATTTAAGATCGTCCATGTTGAAGATGTTGCGCCAGTCGCGCACGGTCC
AATCCTGATGGGCGGTGGCCCAGGCCAACCTCCTTTTTTTCGCCCCCTCA
CTGAGGCCGAAAGTGCTGGGCTCCTTCGGCTGTGGCGATCCTCTCGGTTG
CCGTATGCCTTTGGAGCGAATCTCGCTGATCCTGCGCTGCAAGGTCCTGC
GGCTGACCTCTATGCCGTGTCGGGCCAACTCCCGCTGCACATCGATGGAG
GTGTAGTGCGGATTGTCGCTCAGCATTTGCTCGACAATTTGCCGGTTCTC
CAGGACCTTGGGTCTGCCAACATCGCGCTTCTTTTCCTCCTCCTGCGCAA
CCGCCACGGGCGCCGCTGTTTTCAGTTTTTGCGGCAACCTCAGCGTGGCA
GTCTTCCCCTCGAGCAGCTCACACTCACGAATGCAGCTTATCACGCTCTC
CACGTCGCACTCCAGGATCTGGGCTATCTCCTCACAGCTGTTCGAGCCCT
TCAGCGCCTTCACAATACTTCGAACTTCGGGAGCGAGAACCATGTCGACT

BO04276.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 828 CG4570-RA 1..825 843..19 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1260 CG4570-RA 207..1036 848..19 4135 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10857013..10857842 848..19 4135 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 06:17:54 has no hits.

BO04276.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:42 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..828 18..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:47 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..828 18..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:47 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 205..1046 12..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:26 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 205..1046 12..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:26 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10857011..10857852 12..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:47 Download gff for BO04276.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682733..6683574 12..850 99   Minus

BO04276.5prime Sequence

857 bp (812 high quality bases) assembled on 2005-11-29

> BO04276.5prime
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTCCGCGACGGCGGGGATCAGACCGAGTTCTGCGCAAGCTTT
CTAGACC

BO04276.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 828 CG4570-RA 1..825 17..841 4100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1260 CG4570-RA 207..1036 12..841 4120 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10857013..10857842 12..841 4120 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:18:06 has no hits.

BO04276.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:43 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..828 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:49 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..828 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:49 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 199..1046 1..848 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:05 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 199..1046 1..848 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:05 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10857005..10857852 1..848 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:49 Download gff for BO04276.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682727..6683574 1..848 98   Plus

BO04276.complete Sequence

859 bp (859 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629714

> BO04276.complete
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTCCGCAACGGCGGGGATCAGACCGAGTTCTGCGCAAGCTTT
CTAGACCAT

BO04276.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 828 CG4570-PA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1260 CG4570-RA 207..1036 12..841 4135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10857013..10857842 12..841 4135 99.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:48:01 has no hits.

BO04276.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:42 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 1..828 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:25 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 215..1062 1..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:51 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 212..1036 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:42 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 215..1062 1..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:58 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 212..1036 17..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:58 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10857018..10857842 17..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:51 Download gff for BO04276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682740..6683564 17..843 99   Plus

BO04276.pep Sequence

Translation from 16 to 859

> BO04276.pep
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFCASFLDH

BO04276.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 275 CG4570-PA 1..275 1..275 1420 100 Plus