Clone Sequence Records
BO04276.3prime Sequence
850 bp (849 high quality bases) assembled on 2005-12-01
> BO04276.3prime
ATGGTCTAGAAAGCTTGCGCAGAACTCGGTCTGATCCCCGCCGTTGCGGA
GGACCGCTGAGACCCGCCACGTCATCGACTCGTAGAGCATCTCAATTTTG
TCCACCATGTCCTGGTCGCTGTGCCAGACGTCGTACAAGACGGCTCGAAA
CTCGCTGACATTTTTGGGCGCCTGATTCTGAATCCTCGGCTGGATGATGG
CCATCAATTGCTCGAGGAGATTGAGGTCATTGCAGACACTGCCCTCCGGT
CCCATCAGCGAGTCAAGGAAGATCTCCTTTGGCGGCGTTGATTCGTCGAC
GAATTTAAGATCGTCCATGTTGAAGATGTTGCGCCAGTCGCGCACGGTCC
AATCCTGATGGGCGGTGGCCCAGGCCAACCTCCTTTTTTTCGCCCCCTCA
CTGAGGCCGAAAGTGCTGGGCTCCTTCGGCTGTGGCGATCCTCTCGGTTG
CCGTATGCCTTTGGAGCGAATCTCGCTGATCCTGCGCTGCAAGGTCCTGC
GGCTGACCTCTATGCCGTGTCGGGCCAACTCCCGCTGCACATCGATGGAG
GTGTAGTGCGGATTGTCGCTCAGCATTTGCTCGACAATTTGCCGGTTCTC
CAGGACCTTGGGTCTGCCAACATCGCGCTTCTTTTCCTCCTCCTGCGCAA
CCGCCACGGGCGCCGCTGTTTTCAGTTTTTGCGGCAACCTCAGCGTGGCA
GTCTTCCCCTCGAGCAGCTCACACTCACGAATGCAGCTTATCACGCTCTC
CACGTCGCACTCCAGGATCTGGGCTATCTCCTCACAGCTGTTCGAGCCCT
TCAGCGCCTTCACAATACTTCGAACTTCGGGAGCGAGAACCATGTCGACT
BO04276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-PA | 828 | CG4570-RA | 1..825 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-RA | 1260 | CG4570-RA | 207..1036 | 848..19 | 4135 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10857013..10857842 | 848..19 | 4135 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:17:54 has no hits.
BO04276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:42 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:47 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:47 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 205..1046 | 12..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:26 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 205..1046 | 12..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:26 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10857011..10857852 | 12..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:47 Download gff for
BO04276.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6682733..6683574 | 12..850 | 99 | | Minus |
BO04276.5prime Sequence
857 bp (812 high quality bases) assembled on 2005-11-29
> BO04276.5prime
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTCCGCGACGGCGGGGATCAGACCGAGTTCTGCGCAAGCTTT
CTAGACC
BO04276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-PA | 828 | CG4570-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-RA | 1260 | CG4570-RA | 207..1036 | 12..841 | 4120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10857013..10857842 | 12..841 | 4120 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:18:06 has no hits.
BO04276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:43 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-PA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:49 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-PA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:49 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 199..1046 | 1..848 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:05 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 199..1046 | 1..848 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:05 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10857005..10857852 | 1..848 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:49 Download gff for
BO04276.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6682727..6683574 | 1..848 | 98 | | Plus |
BO04276.complete Sequence
859 bp (859 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629714
> BO04276.complete
GAAGTTATCAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGA
AGGCGCTGAAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAG
TGCGACGTGGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGA
GGGGAAGACTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGC
CCGTGGCGGTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCC
AAGGTCCTGGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCC
GCACTACACCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAG
AGGTCAGCCGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAA
GGCATACGGCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTT
CGGCCTCAGTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCC
ATCAGGATTGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGAT
CTTAAATTCGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTC
GCTGATGGGACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGC
AATTGATGGCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAAT
GTCAGCGAGTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGA
CATGGTGGACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCT
CAGCGGTCCTCCGCAACGGCGGGGATCAGACCGAGTTCTGCGCAAGCTTT
CTAGACCAT
BO04276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-RA | 828 | CG4570-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-RA | 1260 | CG4570-RA | 207..1036 | 12..841 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10857013..10857842 | 12..841 | 4135 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:48:01 has no hits.
BO04276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:42 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:25 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 215..1062 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:51 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 212..1036 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:42 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 215..1062 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:58 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4570-RA | 212..1036 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:58 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10857018..10857842 | 17..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:51 Download gff for
BO04276.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6682740..6683564 | 17..843 | 99 | | Plus |
BO04276.pep Sequence
Translation from 16 to 859
> BO04276.pep
MVLAPEVRSIVKALKGSNSCEEIAQILECDVESVISCIRECELLEGKTAT
LRLPQKLKTAAPVAVAQEEEKKRDVGRPKVLENRQIVEQMLSDNPHYTSI
DVQRELARHGIEVSRRTLQRRISEIRSKGIRQPRGSPQPKEPSTFGLSEG
AKKRRLAWATAHQDWTVRDWRNIFNMDDLKFVDESTPPKEIFLDSLMGPE
GSVCNDLNLLEQLMAIIQPRIQNQAPKNVSEFRAVLYDVWHSDQDMVDKI
EMLYESMTWRVSAVLRNGGDQTEFCASFLDH
BO04276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4570-PA | 275 | CG4570-PA | 1..275 | 1..275 | 1420 | 100 | Plus |