Clone Sequence Records
BO04277.3prime Sequence
917 bp (771 high quality bases) assembled on 2005-12-01
> BO04277.3prime
ATGGTCTAGAAAGCTTGCCTCTTGTATATCCATTTCCTGAGTTGCCTGCT
GCATGTCGTGCAATTGTGCCCGCAAATCTTCGGGCAAAGTGTGCTCGTTC
AAGGCACTAGGGTCTTCACCATCCACGACAATCTCCTCTGGATCTGGGGC
TCGTGGCAAAAAGTCGGCATCTGGGAACATTTTGCCAAATATGTCGCGAG
CATTGGCAATGGCCGCGTCATAATCCAGCTCGTAGGTAGGTGGATCGGTG
TAGTAAATATGCTCGGCAGCGGGACTTTTACTAGACTGGGCAGCAATTGT
GAAGTATGAGCTAAATATTATTTGTGCGTCTGATTGATCGAAGAGTTGGC
TAGTGAAAATGGCTAGATCAGACGCTGGATCCTCGCTCAACGCTGGCGTG
GTCAGATGGAAGATATATAAACCCTCGGGACAGGCTCCCGTGTAGTGCGA
CAGTTGTATTAGGAAGGCTTCCCGTCCACCTTCATTGTCAAGTAGTCGAA
GAAGATTTACACCACCACCTCCCTTGTTCAGCTCCTCATTGCCCAGGGGA
CTGGACGATATGAACAAGCCACGTGAGATGTGCGGCTTCAACTCGATGCC
CTTTGAAACTGGTGTATAGCCAGGGGCAGAGACCACATTCTTGGCACGCA
AAGTTTTCCCTGCGCTGCTCAGCAGGAACTCATTCGAATTGGAATCTAAG
GCAATGTCGTCAACGGCTCGCTTTAGGCAGTAAATGCCACCATAAACAGC
GCACAAACGGCAGAAGCACTGCGGCAATTCCCCGCAGCCATACATGGGAA
AGAGAAAGGGTGTGTTGCCATAGCGGCCCAGACTGCCCAGAAATCGTTGT
GTGCGCTGCATACCCTCCTCGAAGCTGGTGCTGGGGGCGCACATGGCAAT
GGCCTGCATCACGCACG
BO04277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8432-PA | 1536 | Rep-RA | 635..1533 | 917..19 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 772..1670 | 917..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492917..19493417 | 917..417 | 2490 | 99.8 | Minus |
2R | 25286936 | 2R | 19493475..19493872 | 416..19 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:43:30 has no hits.
BO04277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:44 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-PA | 635..1536 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:50 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8432-PA | 635..1536 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:25 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 772..1670 | 19..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:29 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 772..1670 | 19..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:29 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492917..19493417 | 417..917 | 99 | -> | Minus |
2R | 19493475..19493872 | 19..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:25 Download gff for
BO04277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15380422..15380922 | 417..917 | 99 | -> | Minus |
arm_2R | 15380980..15381377 | 19..416 | 100 | | Minus |
BO04277.5prime Sequence
923 bp (782 high quality bases) assembled on 2005-11-29
> BO04277.5prime
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGGGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTCCAATCGAATGAGTTCCTGCTGAGC
AGCGCAGGGAAAACTTTGCGTGG
BO04277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8432-PA | 1536 | Rep-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG8432-PA | 1536 | Rep-RA | 865..907 | 880..922 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 136..1044 | 15..922 | 4505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492329..19493189 | 63..922 | 4240 | 99.8 | Plus |
2R | 25286936 | 2R | 19492222..19492273 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:58:00 has no hits.
BO04277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:45 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:51 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8432-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:42 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 136..1044 | 15..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:33:37 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 136..1044 | 15..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:33:37 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492222..19492272 | 15..65 | 100 | -> | Plus |
2R | 19492332..19493189 | 66..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:42 Download gff for
BO04277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15379727..15379777 | 15..65 | 100 | -> | Plus |
arm_2R | 15379837..15380694 | 66..923 | 99 | | Plus |
BO04277.complete Sequence
1567 bp (1567 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629715
> BO04277.complete
GAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGG
TCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGC
AGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGA
TGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGG
AAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCC
ATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGT
GCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTAT
ACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGC
TATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGA
AATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACAC
TGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAAC
GATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACG
AACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGT
CGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAG
GAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGG
CAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATTGCCGCAGT
GCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCCTAAAGCGA
GCCGTTGACGACATTGCCTTAGATTCCAATTCGAATGAGTTCCTGCTGAG
CAGCGCAGGGAAAACTTTGCGTGCCAAGAATGTGGTCTCTGCCCCTGGCT
ATACACCAGTTTCAAAGGGCATCGAGTTGAAGCCGCACATCTCACGTGGC
TTGTTCATATCGTCCAGTCCCCTGGGCAATGAGGAGCTGAACAAGGGAGG
TGGTGGTGTAAATCTTCTTCGACTACTTGACAATGAAGGTGGACGGGAAG
CCTTCCTAATACAACTGTCGCACTACACGGGAGCCTGTCCCGAGGGTTTA
TATATCTTCCATCTGACCACGCCAGCGTTGAGCGAGGATCCAGCGTCTGA
TCTAGCCATTTTCACTAGCCAACTCTTCGATCAATCAGACGCACAAATAA
TATTTAGCTCATACTTCACAATTGCTGCCCAGTCTAGTAAAAGTCCCGCT
GCCGAGCATATTTACTACACCGATCCACCTACCTACGAGCTGGATTATGA
CGCGGCCATTGCCAATGCTCGCGACATATTTGGCAAAATGTTCCCAGATG
CCGACTTTTTGCCACGAGCCCCAGATCCAGAGGAGATTGTCGTGGATGGT
GAAGACCCTAGTGCCTTGAACGAGCACACTTTGCCCGAAGATTTGCGGGC
ACAATTGCACGACATGCAGCAGGCAACTCAGGAAATGGATATACAAGAGG
CAAGCTTTCTAGACCAT
BO04277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1536 | CG8432-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-RA | 1923 | CG8432-RA | 136..1670 | 15..1549 | 7675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19492329..19493417 | 63..1151 | 5445 | 100 | Plus |
2R | 25286936 | 2R | 19493475..19493872 | 1152..1549 | 1990 | 100 | Plus |
2R | 25286936 | 2R | 19492222..19492273 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:31:35 has no hits.
BO04277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:43 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 1..1536 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:27 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 132..1666 | 15..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:29 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 143..1670 | 22..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:43 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 132..1666 | 15..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:01 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep-RA | 143..1670 | 22..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:01 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19492229..19492272 | 22..65 | 100 | -> | Plus |
2R | 19492332..19493417 | 66..1151 | 100 | -> | Plus |
2R | 19493475..19493872 | 1152..1551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:29 Download gff for
BO04277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15379734..15379777 | 22..65 | 100 | -> | Plus |
arm_2R | 15379837..15380922 | 66..1151 | 100 | -> | Plus |
arm_2R | 15380980..15381377 | 1152..1551 | 99 | | Plus |
BO04277.pep Sequence
Translation from 16 to 1567
> BO04277.pep
MLDDLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSF
SMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSR
RFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVP
CSRSDVFNTKTLTIVEKRLLMKFLTACNDYGEDKCNEDSLEFRGRTFLEY
LQAQRVTEKISSCVMQAIAMCGPSTSFEEGMQRTQRFLGSLGRYGNTPFL
FPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKT
LRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGNEELNKGGGGVNL
LRLLDNEGGREAFLIQLSHYTGACPEGLYIFHLTTPALSEDPASDLAIFT
SQLFDQSDAQIIFSSYFTIAAQSSKSPAAEHIYYTDPPTYELDYDAAIAN
ARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHDM
QQATQEMDIQEASFLDH
BO04277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rep-PA | 511 | CG8432-PA | 1..511 | 1..511 | 2678 | 100 | Plus |
Gdi-PC | 443 | CG4422-PC | 3..366 | 7..396 | 351 | 26.1 | Plus |
Gdi-PB | 443 | CG4422-PB | 3..366 | 7..396 | 351 | 26.1 | Plus |
Gdi-PA | 443 | CG4422-PA | 3..366 | 7..396 | 351 | 26.1 | Plus |