Clone Sequence Records
BO04279.3prime Sequence
847 bp (732 high quality bases) assembled on 2005-12-01
> BO04279.3prime
ATGGTCTAGAAAGCTTGCCCCCTGTCCCCTCCAGAGTTCTCCGAGAAATG
TCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAATA
AAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCTC
AGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCGA
TCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAATG
AAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCAC
CGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGGG
CATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCGC
TCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAATT
GGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCGG
CCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCAA
ATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTAA
AGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTCA
ATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATAC
GAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTACT
GATGCAACCGAAGCGCAGACTACTGATCCAGGAATTGCCTGCCGCAACCG
ACGAGTGTTCCCAGCGACGGGTTATACCAAGAGCTAAGCTCTCGAGC
BO04279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 717..1545 | 847..19 | 4145 | 100 | Minus |
CG8533-PA | 1548 | CG8533-RA | 717..1545 | 847..19 | 4145 | 100 | Minus |
CG8533-PC | 1302 | CG8533-RC | 471..1299 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 1110..1938 | 847..19 | 4145 | 100 | Minus |
Ir76a-RD | 1735 | CG42584-RD | 854..1682 | 847..19 | 4145 | 100 | Minus |
Ir76a-RA | 1722 | CG42584-RA | 841..1669 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802898..19803374 | 495..19 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 19802489..19802840 | 847..496 | 1760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:15:19 has no hits.
BO04279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:48 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 471..1302 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:55 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 471..1302 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:38 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 841..1675 | 10..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:43 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 841..1675 | 10..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:43 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19802489..19802840 | 496..847 | 100 | -> | Minus |
3L | 19802898..19803380 | 10..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:38 Download gff for
BO04279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19795589..19795940 | 496..847 | 100 | -> | Minus |
arm_3L | 19795998..19796480 | 10..495 | 99 | | Minus |
BO04279.5prime Sequence
830 bp (796 high quality bases) assembled on 2005-11-29
> BO04279.5prime
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGAACAGCGAT
BO04279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 247..1052 | 17..822 | 4030 | 100 | Plus |
CG8533-PA | 1548 | CG8533-RA | 247..1052 | 17..822 | 4030 | 100 | Plus |
CG8533-PC | 1302 | CG8533-RC | 1..806 | 17..822 | 4030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 640..1453 | 17..830 | 4040 | 99.8 | Plus |
Ir76a-RA | 1722 | CG42584-RA | 371..1184 | 17..830 | 4040 | 99.8 | Plus |
Ir76a-RB | 1761 | CG8533-RB | 410..1223 | 17..830 | 4040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802335..19802832 | 333..830 | 2460 | 99.6 | Plus |
3L | 28110227 | 3L | 19801987..19802114 | 97..224 | 625 | 99.2 | Plus |
3L | 28110227 | 3L | 19802161..19802277 | 220..336 | 570 | 99.1 | Plus |
3L | 28110227 | 3L | 19801845..19801929 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:18:19 has no hits.
BO04279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:48 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:57 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:51 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 404..1223 | 10..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:54 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 404..1223 | 10..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:54 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19801839..19801928 | 10..100 | 96 | -> | Plus |
3L | 19801991..19802114 | 101..224 | 100 | -> | Plus |
3L | 19802166..19802274 | 225..333 | 100 | -> | Plus |
3L | 19802336..19802832 | 334..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:51 Download gff for
BO04279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19794939..19795028 | 10..100 | 96 | -> | Plus |
arm_3L | 19795091..19795214 | 101..224 | 100 | -> | Plus |
arm_3L | 19795266..19795374 | 225..333 | 100 | -> | Plus |
arm_3L | 19795436..19795932 | 334..830 | 99 | | Plus |
BO04279.complete Sequence
1333 bp (1333 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629716
> BO04279.complete
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTT
CTCGCACACGGAGCAAATGGGATTTGTCGTCGAGCGCCTTCAGTTTGGTC
ATTTGGGCAACACCGAGCTAATAGAAAACGATGCCCTAAAGCGGCTGAAA
CTTATGGTGGATGATATTTACTTTGCATTTACGGTGGCGTTTGTGCCGCG
ACTGTGGCCGCACTTAAATGCCTACAACGACTTCATTCTGGCTTGGCATT
CCTCGGGCTTTGACAAATTCTGGGAATGGAAGATCGCCGCCGAATACATG
AATGCGCACCGCCAAAATCGCATCGTGGCATCTGAGAAAACGAACCTAGA
TATAGGACCTGTTAAACTTGGCATTGATAATTTTATTGGCCTAATCCTGC
TTTGGTGCTTCGGCATGATTTGTAGCCTTCTGACATTTCTCGGAGAACTC
TGGAGGGGACAGGGGGCAAGCTTTCTAGACCAT
BO04279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1941 | CG42584-PE | 640..1938 | 17..1315 | 6495 | 100 | Plus |
Ir76a-RA | 1548 | CG42584-PA | 247..1545 | 17..1315 | 6495 | 100 | Plus |
Ir76a-RB | 1548 | CG42584-PB | 247..1545 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 640..1938 | 17..1315 | 6495 | 100 | Plus |
Ir76a-RA | 1722 | CG42584-RA | 371..1669 | 17..1315 | 6495 | 100 | Plus |
Ir76a-RB | 1761 | CG8533-RB | 410..1708 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802335..19802840 | 333..838 | 2530 | 100 | Plus |
3L | 28110227 | 3L | 19802898..19803374 | 839..1315 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 19801987..19802114 | 97..224 | 625 | 99.2 | Plus |
3L | 28110227 | 3L | 19802161..19802277 | 220..336 | 570 | 99.1 | Plus |
3L | 28110227 | 3L | 19801845..19801929 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:21:42 has no hits.
BO04279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:28 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RC | 1..1302 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:10 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RA | 438..1748 | 10..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:14 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 410..1708 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:29 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-RA | 438..1748 | 10..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:48 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 410..1708 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:48 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19801845..19801928 | 17..100 | 100 | -> | Plus |
3L | 19801991..19802114 | 101..224 | 100 | -> | Plus |
3L | 19802166..19802274 | 225..333 | 100 | -> | Plus |
3L | 19802336..19802840 | 334..838 | 100 | -> | Plus |
3L | 19802898..19803374 | 839..1317 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:14 Download gff for
BO04279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19794945..19795028 | 17..100 | 100 | -> | Plus |
arm_3L | 19795091..19795214 | 101..224 | 100 | -> | Plus |
arm_3L | 19795266..19795374 | 225..333 | 100 | -> | Plus |
arm_3L | 19795436..19795940 | 334..838 | 100 | -> | Plus |
arm_3L | 19795998..19796474 | 839..1317 | 99 | | Plus |
BO04279.pep Sequence
Translation from 16 to 1333
> BO04279.pep
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQGASFLDH
BO04279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-PE | 646 | CG42584-PE | 214..646 | 1..433 | 2306 | 100 | Plus |
Ir76a-PA | 515 | CG42584-PA | 83..515 | 1..433 | 2306 | 100 | Plus |
Ir76a-PB | 515 | CG8533-PB | 83..515 | 1..433 | 2306 | 100 | Plus |
Ir41a-PC | 648 | CG33492-PC | 202..636 | 2..428 | 936 | 42.3 | Plus |
Ir92a-PC | 678 | CG15685-PC | 237..669 | 3..428 | 402 | 25.6 | Plus |