Clone BO04279 Report

Search the DGRC for BO04279

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptIr76a-RC
Protein status:BO04279.pep: validated not full length
Sequenced Size:1333

Clone Sequence Records

BO04279.3prime Sequence

847 bp (732 high quality bases) assembled on 2005-12-01

> BO04279.3prime
ATGGTCTAGAAAGCTTGCCCCCTGTCCCCTCCAGAGTTCTCCGAGAAATG
TCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAATA
AAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCTC
AGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCGA
TCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAATG
AAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCAC
CGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGGG
CATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCGC
TCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAATT
GGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCGG
CCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCAA
ATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTAA
AGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTCA
ATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATAC
GAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTACT
GATGCAACCGAAGCGCAGACTACTGATCCAGGAATTGCCTGCCGCAACCG
ACGAGTGTTCCCAGCGACGGGTTATACCAAGAGCTAAGCTCTCGAGC

BO04279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 717..1545 847..19 4145 100 Minus
CG8533-PA 1548 CG8533-RA 717..1545 847..19 4145 100 Minus
CG8533-PC 1302 CG8533-RC 471..1299 847..19 4145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 1110..1938 847..19 4145 100 Minus
Ir76a-RD 1735 CG42584-RD 854..1682 847..19 4145 100 Minus
Ir76a-RA 1722 CG42584-RA 841..1669 847..19 4145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802898..19803374 495..19 2385 100 Minus
3L 28110227 3L 19802489..19802840 847..496 1760 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:15:19 has no hits.

BO04279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:48 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 471..1302 18..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:55 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 471..1302 18..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:38 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 841..1675 10..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:43 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 841..1675 10..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:43 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19802489..19802840 496..847 100 -> Minus
3L 19802898..19803380 10..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:38 Download gff for BO04279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19795589..19795940 496..847 100 -> Minus
arm_3L 19795998..19796480 10..495 99   Minus

BO04279.5prime Sequence

830 bp (796 high quality bases) assembled on 2005-11-29

> BO04279.5prime
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGAACAGCGAT

BO04279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 247..1052 17..822 4030 100 Plus
CG8533-PA 1548 CG8533-RA 247..1052 17..822 4030 100 Plus
CG8533-PC 1302 CG8533-RC 1..806 17..822 4030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 640..1453 17..830 4040 99.8 Plus
Ir76a-RA 1722 CG42584-RA 371..1184 17..830 4040 99.8 Plus
Ir76a-RB 1761 CG8533-RB 410..1223 17..830 4040 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802335..19802832 333..830 2460 99.6 Plus
3L 28110227 3L 19801987..19802114 97..224 625 99.2 Plus
3L 28110227 3L 19802161..19802277 220..336 570 99.1 Plus
3L 28110227 3L 19801845..19801929 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:18:19 has no hits.

BO04279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:48 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:57 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:51 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 404..1223 10..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:54 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 404..1223 10..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:54 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19801839..19801928 10..100 96 -> Plus
3L 19801991..19802114 101..224 100 -> Plus
3L 19802166..19802274 225..333 100 -> Plus
3L 19802336..19802832 334..830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:51 Download gff for BO04279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19794939..19795028 10..100 96 -> Plus
arm_3L 19795091..19795214 101..224 100 -> Plus
arm_3L 19795266..19795374 225..333 100 -> Plus
arm_3L 19795436..19795932 334..830 99   Plus

BO04279.complete Sequence

1333 bp (1333 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629716

> BO04279.complete
GAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCG
AGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTAT
GAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGGATGTAAC
CATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACA
ACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATC
TACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACG
AAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGT
ATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTG
CCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCA
GTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAG
CTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAAT
TCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTT
CGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCG
TCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGT
GGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAGCGGCGGA
CTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCAC
AGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGTTCTTCTT
GGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTAATATCCGCCTT
CTCGCACACGGAGCAAATGGGATTTGTCGTCGAGCGCCTTCAGTTTGGTC
ATTTGGGCAACACCGAGCTAATAGAAAACGATGCCCTAAAGCGGCTGAAA
CTTATGGTGGATGATATTTACTTTGCATTTACGGTGGCGTTTGTGCCGCG
ACTGTGGCCGCACTTAAATGCCTACAACGACTTCATTCTGGCTTGGCATT
CCTCGGGCTTTGACAAATTCTGGGAATGGAAGATCGCCGCCGAATACATG
AATGCGCACCGCCAAAATCGCATCGTGGCATCTGAGAAAACGAACCTAGA
TATAGGACCTGTTAAACTTGGCATTGATAATTTTATTGGCCTAATCCTGC
TTTGGTGCTTCGGCATGATTTGTAGCCTTCTGACATTTCTCGGAGAACTC
TGGAGGGGACAGGGGGCAAGCTTTCTAGACCAT

BO04279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1941 CG42584-PE 640..1938 17..1315 6495 100 Plus
Ir76a-RA 1548 CG42584-PA 247..1545 17..1315 6495 100 Plus
Ir76a-RB 1548 CG42584-PB 247..1545 17..1315 6495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 640..1938 17..1315 6495 100 Plus
Ir76a-RA 1722 CG42584-RA 371..1669 17..1315 6495 100 Plus
Ir76a-RB 1761 CG8533-RB 410..1708 17..1315 6495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802335..19802840 333..838 2530 100 Plus
3L 28110227 3L 19802898..19803374 839..1315 2385 100 Plus
3L 28110227 3L 19801987..19802114 97..224 625 99.2 Plus
3L 28110227 3L 19802161..19802277 220..336 570 99.1 Plus
3L 28110227 3L 19801845..19801929 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:21:42 has no hits.

BO04279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:28 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RC 1..1302 17..1316 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:10 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 438..1748 10..1324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:14 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 410..1708 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:29 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
CG8533-RA 438..1748 10..1324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:48 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 410..1708 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:48 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801845..19801928 17..100 100 -> Plus
3L 19801991..19802114 101..224 100 -> Plus
3L 19802166..19802274 225..333 100 -> Plus
3L 19802336..19802840 334..838 100 -> Plus
3L 19802898..19803374 839..1317 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:14 Download gff for BO04279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19794945..19795028 17..100 100 -> Plus
arm_3L 19795091..19795214 101..224 100 -> Plus
arm_3L 19795266..19795374 225..333 100 -> Plus
arm_3L 19795436..19795940 334..838 100 -> Plus
arm_3L 19795998..19796474 839..1317 99   Plus

BO04279.pep Sequence

Translation from 16 to 1333

> BO04279.pep
MSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTDVTIDGTD
IQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGV
GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWM
CVMLCLLLESLALGITRRWEHSSVAAGNSWISSLRFGCISTLKLFVNQST
NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL
FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQ
MGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHL
NAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK
LGIDNFIGLILLWCFGMICSLLTFLGELWRGQGASFLDH

BO04279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-PE 646 CG42584-PE 214..646 1..433 2306 100 Plus
Ir76a-PA 515 CG42584-PA 83..515 1..433 2306 100 Plus
Ir76a-PB 515 CG8533-PB 83..515 1..433 2306 100 Plus
Ir41a-PC 648 CG33492-PC 202..636 2..428 936 42.3 Plus
Ir92a-PC 678 CG15685-PC 237..669 3..428 402 25.6 Plus