Clone BO04280 Report

Search the DGRC for BO04280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptTango2-RA
Protein status:BO04280.pep: validated full length
Sequenced Size:883

Clone Sequence Records

BO04280.3prime Sequence

881 bp (801 high quality bases) assembled on 2005-12-01

> BO04280.3prime
ATGGTCTAGAAAGCTTGCAACGCCGTTTTGAAAATCCTTTTCAATGTGGG
TCTTGTTCCATTCGCCGTGCGGATCCAATCCAGTCATTGTCTCCTCAATG
AAGTGCATCTTATTCTCGCTGTCCACCAGGACAACGGAGTGTGTACGGCT
GCCATAGGCATGCTCTTCGATATGGACGTTTAGGGAACTCAATCCCTCGC
CCCAGTTGGGCGCACGTGTCTTTAGCTCGTCGTCCGGCCAGAATTTGTGC
TTGTTGCGGAGCAACTGCATCAGCTGGGCGGACAGAGTCTCCACGCTGGC
TTCCCCATGAGCCTTAACGATCGCCTCGAACTCCTGTTTGCCATGACGCA
CCTTCTCGAACGGAGAGTGCGGCAGACTGTTGCCAAATCCGTAGCACTCG
CCGTTCTGGAAATCCTCCAGCGTGGGCGGCACATTGCTCAGCAGCTTCAC
GCGAGCGGGCTGGGATGCAGATCCAATTTCGATGGACACAAAGTTGAAGG
CAGAATACTTGGTGCAATCTTTGAGCAGCCTTTCGTTGTAGTTCAGGATG
CTGTGCTCCTCGTCCGCCCGGGTAACATAGTCCGCCACAATCATGCCGCG
CCCAACTGCATCGCGTGGCTTGGGCTCGCCGGTCAGATTGAGCAGGGCGC
CCACCTTAAAGAAGCCAGCGGAGTGGCCGATCGCCAGCCAGGTGCCGCCC
TCGCGTCCCGGCTCCAGATCGATCCCTCCGTAAACATGATCGGCATTCGC
CCACTTGGCTGCCGATAGGGTGGCGCGGGCAAAGAACTCGTCCCGATTGG
AGGCCAGGATGAGCTTGTAGCCACCCGGTTGCGGATTCGAGTCCGCACAA
AAGAATATCACGCACATGTCGACTGATAACT

BO04280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11176-PA 852 CG11176-RA 1..849 867..19 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1145 867..19 4245 100 Minus
Tango2-RA 1451 CG11176-RA 446..1294 867..19 4245 100 Minus
Tango2-RD 1622 CG11176-RD 881..1465 603..19 2925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619050 473..19 2275 100 Minus
X 23542271 X 13617434..13617576 867..725 715 100 Minus
X 23542271 X 13618272..13618402 603..473 655 100 Minus
X 23542271 X 13617812..13617937 727..602 630 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:43:42 has no hits.

BO04280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:49 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 16..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:59 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..852 16..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:28 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1294 19..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:09 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1294 19..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:09 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13617429..13617575 726..871 99 -> Minus
X 13617814..13617936 603..725 100 -> Minus
X 13618273..13618402 473..602 100 -> Minus
X 13618597..13619050 19..472 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:28 Download gff for BO04280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511462..13511608 726..871 99 -> Minus
arm_X 13511847..13511969 603..725 100 -> Minus
arm_X 13512306..13512435 473..602 100 -> Minus
arm_X 13512630..13513083 19..472 100   Minus

BO04280.5prime Sequence

827 bp (754 high quality bases) assembled on 2005-11-29

> BO04280.5prime
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGA

BO04280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11176-PA 852 CG11176-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1107 17..827 4055 100 Plus
Tango2-RA 1451 CG11176-RA 446..1256 17..827 4055 100 Plus
Tango2-RD 1622 CG11176-RD 881..1427 281..827 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619012 411..827 2085 100 Plus
X 23542271 X 13617434..13617576 17..159 715 100 Plus
X 23542271 X 13618272..13618402 281..411 655 100 Plus
X 23542271 X 13617812..13617937 157..282 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:04:07 has no hits.

BO04280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:50 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:00 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11176-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:37 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1255 13..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:43 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 441..1255 13..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:43 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13617429..13617575 13..158 99 -> Plus
X 13617814..13617936 159..281 100 -> Plus
X 13618273..13618402 282..411 100 -> Plus
X 13618597..13619011 412..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:37 Download gff for BO04280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13511462..13511608 13..158 99 -> Plus
arm_X 13511847..13511969 159..281 100 -> Plus
arm_X 13512306..13512435 282..411 100 -> Plus
arm_X 13512630..13513044 412..826 100   Plus

BO04280.complete Sequence

883 bp (883 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629717

> BO04280.complete
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTGCAAGCTTTCTAGACCAT

BO04280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 852 CG11176-PC 1..849 17..865 4245 100 Plus
Tango2-RA 852 CG11176-PA 1..849 17..865 4245 100 Plus
Tango2-RD 1023 CG11176-PD 436..1020 281..865 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-RC 1302 CG11176-RC 297..1145 17..865 4245 100 Plus
Tango2-RA 1451 CG11176-RA 446..1294 17..865 4245 100 Plus
Tango2-RD 1622 CG11176-RD 881..1465 281..865 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13618596..13619050 411..865 2275 100 Plus
X 23542271 X 13617434..13617576 17..159 715 100 Plus
X 23542271 X 13618272..13618402 281..411 655 100 Plus
X 23542271 X 13617812..13617937 157..282 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:13:18 has no hits.

BO04280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:30 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:12 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 438..1291 13..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:55 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 446..1294 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:30 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 438..1291 13..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:40 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
Tango2-RA 446..1294 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:40 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
X 13618597..13619050 412..867 99   Plus
X 13617434..13617575 17..158 100 -> Plus
X 13617814..13617936 159..281 100 -> Plus
X 13618273..13618402 282..411 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:55 Download gff for BO04280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13512630..13513083 412..867 99   Plus
arm_X 13511467..13511608 17..158 100 -> Plus
arm_X 13511847..13511969 159..281 100 -> Plus
arm_X 13512306..13512435 282..411 100 -> Plus

BO04280.pep Sequence

Translation from 16 to 883

> BO04280.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTR
ADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLLSNVPPTL
EDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVETLSAQLM
QLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTHSVVLVDS
ENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGVASFLDH

BO04280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tango2-PC 283 CG11176-PC 1..283 1..283 1515 100 Plus
Tango2-PA 283 CG11176-PA 1..283 1..283 1515 100 Plus
Tango2-PD 340 CG11176-PD 1..340 1..283 1389 81.2 Plus
Tango2-PB 340 CG11176-PB 1..340 1..283 1389 81.2 Plus