Clone Sequence Records
BO04280.3prime Sequence
881 bp (801 high quality bases) assembled on 2005-12-01
> BO04280.3prime
ATGGTCTAGAAAGCTTGCAACGCCGTTTTGAAAATCCTTTTCAATGTGGG
TCTTGTTCCATTCGCCGTGCGGATCCAATCCAGTCATTGTCTCCTCAATG
AAGTGCATCTTATTCTCGCTGTCCACCAGGACAACGGAGTGTGTACGGCT
GCCATAGGCATGCTCTTCGATATGGACGTTTAGGGAACTCAATCCCTCGC
CCCAGTTGGGCGCACGTGTCTTTAGCTCGTCGTCCGGCCAGAATTTGTGC
TTGTTGCGGAGCAACTGCATCAGCTGGGCGGACAGAGTCTCCACGCTGGC
TTCCCCATGAGCCTTAACGATCGCCTCGAACTCCTGTTTGCCATGACGCA
CCTTCTCGAACGGAGAGTGCGGCAGACTGTTGCCAAATCCGTAGCACTCG
CCGTTCTGGAAATCCTCCAGCGTGGGCGGCACATTGCTCAGCAGCTTCAC
GCGAGCGGGCTGGGATGCAGATCCAATTTCGATGGACACAAAGTTGAAGG
CAGAATACTTGGTGCAATCTTTGAGCAGCCTTTCGTTGTAGTTCAGGATG
CTGTGCTCCTCGTCCGCCCGGGTAACATAGTCCGCCACAATCATGCCGCG
CCCAACTGCATCGCGTGGCTTGGGCTCGCCGGTCAGATTGAGCAGGGCGC
CCACCTTAAAGAAGCCAGCGGAGTGGCCGATCGCCAGCCAGGTGCCGCCC
TCGCGTCCCGGCTCCAGATCGATCCCTCCGTAAACATGATCGGCATTCGC
CCACTTGGCTGCCGATAGGGTGGCGCGGGCAAAGAACTCGTCCCGATTGG
AGGCCAGGATGAGCTTGTAGCCACCCGGTTGCGGATTCGAGTCCGCACAA
AAGAATATCACGCACATGTCGACTGATAACT
BO04280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11176-PA | 852 | CG11176-RA | 1..849 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1145 | 867..19 | 4245 | 100 | Minus |
Tango2-RA | 1451 | CG11176-RA | 446..1294 | 867..19 | 4245 | 100 | Minus |
Tango2-RD | 1622 | CG11176-RD | 881..1465 | 603..19 | 2925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619050 | 473..19 | 2275 | 100 | Minus |
X | 23542271 | X | 13617434..13617576 | 867..725 | 715 | 100 | Minus |
X | 23542271 | X | 13618272..13618402 | 603..473 | 655 | 100 | Minus |
X | 23542271 | X | 13617812..13617937 | 727..602 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:43:42 has no hits.
BO04280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:49 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:59 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..852 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:28 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1294 | 19..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:09 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1294 | 19..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:09 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13617429..13617575 | 726..871 | 99 | -> | Minus |
X | 13617814..13617936 | 603..725 | 100 | -> | Minus |
X | 13618273..13618402 | 473..602 | 100 | -> | Minus |
X | 13618597..13619050 | 19..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:28 Download gff for
BO04280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13511462..13511608 | 726..871 | 99 | -> | Minus |
arm_X | 13511847..13511969 | 603..725 | 100 | -> | Minus |
arm_X | 13512306..13512435 | 473..602 | 100 | -> | Minus |
arm_X | 13512630..13513083 | 19..472 | 100 | | Minus |
BO04280.5prime Sequence
827 bp (754 high quality bases) assembled on 2005-11-29
> BO04280.5prime
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGA
BO04280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11176-PA | 852 | CG11176-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1107 | 17..827 | 4055 | 100 | Plus |
Tango2-RA | 1451 | CG11176-RA | 446..1256 | 17..827 | 4055 | 100 | Plus |
Tango2-RD | 1622 | CG11176-RD | 881..1427 | 281..827 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619012 | 411..827 | 2085 | 100 | Plus |
X | 23542271 | X | 13617434..13617576 | 17..159 | 715 | 100 | Plus |
X | 23542271 | X | 13618272..13618402 | 281..411 | 655 | 100 | Plus |
X | 23542271 | X | 13617812..13617937 | 157..282 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:04:07 has no hits.
BO04280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:50 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:00 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11176-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:37 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1255 | 13..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:43 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 441..1255 | 13..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:43 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13617429..13617575 | 13..158 | 99 | -> | Plus |
X | 13617814..13617936 | 159..281 | 100 | -> | Plus |
X | 13618273..13618402 | 282..411 | 100 | -> | Plus |
X | 13618597..13619011 | 412..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:37 Download gff for
BO04280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13511462..13511608 | 13..158 | 99 | -> | Plus |
arm_X | 13511847..13511969 | 159..281 | 100 | -> | Plus |
arm_X | 13512306..13512435 | 282..411 | 100 | -> | Plus |
arm_X | 13512630..13513044 | 412..826 | 100 | | Plus |
BO04280.complete Sequence
883 bp (883 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629717
> BO04280.complete
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGC
GGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACG
AAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCC
ATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAA
TGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTG
GCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAG
GAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCT
GTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGG
ACGACGAGCTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCC
CTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGT
TGTCCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGA
CTGGATTGGATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGAT
TTTCAAAACGGCGTTGCAAGCTTTCTAGACCAT
BO04280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 852 | CG11176-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
Tango2-RA | 852 | CG11176-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Tango2-RD | 1023 | CG11176-PD | 436..1020 | 281..865 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-RC | 1302 | CG11176-RC | 297..1145 | 17..865 | 4245 | 100 | Plus |
Tango2-RA | 1451 | CG11176-RA | 446..1294 | 17..865 | 4245 | 100 | Plus |
Tango2-RD | 1622 | CG11176-RD | 881..1465 | 281..865 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13618596..13619050 | 411..865 | 2275 | 100 | Plus |
X | 23542271 | X | 13617434..13617576 | 17..159 | 715 | 100 | Plus |
X | 23542271 | X | 13618272..13618402 | 281..411 | 655 | 100 | Plus |
X | 23542271 | X | 13617812..13617937 | 157..282 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:13:18 has no hits.
BO04280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:30 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:12 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 438..1291 | 13..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:55 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 446..1294 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:30 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 438..1291 | 13..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:40 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango2-RA | 446..1294 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:40 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13618597..13619050 | 412..867 | 99 | | Plus |
X | 13617434..13617575 | 17..158 | 100 | -> | Plus |
X | 13617814..13617936 | 159..281 | 100 | -> | Plus |
X | 13618273..13618402 | 282..411 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:55 Download gff for
BO04280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13512630..13513083 | 412..867 | 99 | | Plus |
arm_X | 13511467..13511608 | 17..158 | 100 | -> | Plus |
arm_X | 13511847..13511969 | 159..281 | 100 | -> | Plus |
arm_X | 13512306..13512435 | 282..411 | 100 | -> | Plus |
BO04280.pep Sequence
Translation from 16 to 883
> BO04280.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTR
ADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLLSNVPPTL
EDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVETLSAQLM
QLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTHSVVLVDS
ENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGVASFLDH
BO04280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango2-PC | 283 | CG11176-PC | 1..283 | 1..283 | 1515 | 100 | Plus |
Tango2-PA | 283 | CG11176-PA | 1..283 | 1..283 | 1515 | 100 | Plus |
Tango2-PD | 340 | CG11176-PD | 1..340 | 1..283 | 1389 | 81.2 | Plus |
Tango2-PB | 340 | CG11176-PB | 1..340 | 1..283 | 1389 | 81.2 | Plus |