Clone BO04283 Report

Search the DGRC for BO04283

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG5445-RA
Protein status:BO04283.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO04283.3prime Sequence

933 bp (847 high quality bases) assembled on 2005-12-01

> BO04283.3prime
ATGGTCTAGAAAGCTTGCTTGGGTGTGCGCGGTTATCACGATGTTGATTT
GCGGATAGATATCCGGCTTCACCTCCGACGTAATCAGCTGCACCATCCGC
TGCTGCAGTTCGTCCTGGCTGGCCTGCGTACCGGGCGGTATCATCCAAAT
GGCATCGCCAAAGTACCAGCCATTTGAAGTGCACAGCCGCCACATTGTCG
GCGGCTGCGTGGGCATCATATCGGCCAGGATATCACAAGTTTCGCCCGGA
CGTAGGGCGGGCACATTGATGCGCTGCGTCTGGATGGGCGAGGTCAGATA
GCAGTTGTTCGGCCAGCGCTCGGTGCCATCGTTCTGCAGCTGAAACGCTT
GCTGCTGAGCATTCACTTGCTTCTCCTGGACGATCTTCATCGAAGGCAGC
GACTGTAAGCTGCAGAAGTCCAGATAGCAGCCCACCGCCGTCTGCAGGCT
CCAGTTACTCATCTCTAGGTAAAACCTGGCCGATTCCCGGTTCATCTGGT
TGTTCATTAGGCTCTGAAACTGGCTGATGAGGTCTTCGTGGTCCGTGGTG
CCCATACAGCTGAACTGTTGCAGCAACAGGGAGTCGATATCGAAGTCGTT
CGTCGGTAGACACTTGATCGTGGATGCGGATGCGTTAGCGGTTGTTGCGG
ATGGACTGGGACTCAGATTTGAGTTGGGATTCGCATTCGAATTTGGACTG
TTGTTCGGAGCGGAGTGCGGCCCTGGGGGCGCGGGCAGGGGAATGGCCAT
CATGGGATTTGTGGTTGTTGTTGTATTGGTTGTGAGCCCGAATAACGGTT
CACATTGCATCTGTTGTTGCTGCTGCTGCTGGCTGTCCGAATTTGGATTC
GGATTCGGATTTAGATTCAGATTCATGTTCATGTTCTGCATCTCGGCGGC
GTTTTCGTAGTTCTCCTCCACATCCATGTCGAC

BO04283.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PB 912 CG5445-RB 1..909 927..19 4545 100 Minus
CG5445-PC 912 CG5445-RC 1..909 927..19 4545 100 Minus
CG5445-PA 912 CG5445-RA 1..909 927..19 4545 100 Minus
CG5445-PD 912 CG5445-RD 1..909 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1406 931..19 4550 99.9 Minus
CG5445-RF 1740 CG5445-RF 187..1099 931..19 4550 99.9 Minus
CG5445-RD 1995 CG5445-RD 442..1354 931..19 4550 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 931..451 2390 99.8 Minus
X 23542271 X 17304074..17304370 452..156 1485 100 Minus
X 23542271 X 17304697..17304834 156..19 690 100 Minus
Blast to na_te.dros performed 2015-02-11 02:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 830..794 122 81.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 836..759 114 65.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 836..805 111 85.3 Minus
TART-A 13424 TART-A 13424bp 8635..8667 836..804 111 81.8 Minus
roo 9092 roo DM_ROO 9092bp 1064..1135 831..759 110 63 Minus

BO04283.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:51 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PC 1..912 16..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:01 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PD 1..912 16..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:00 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 441..1359 13..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:17 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 441..1359 13..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:17 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17302910..17303390 452..933 99 -> Minus
X 17304075..17304370 156..451 100 -> Minus
X 17304698..17304839 13..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:00 Download gff for BO04283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196943..17197423 452..933 99 -> Minus
arm_X 17198108..17198403 156..451 100 -> Minus
arm_X 17198731..17198872 13..155 97   Minus

BO04283.5prime Sequence

819 bp (799 high quality bases) assembled on 2005-11-29

> BO04283.5prime
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCA

BO04283.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PB 912 CG5445-RB 1..803 17..819 4015 100 Plus
CG5445-PC 912 CG5445-RC 1..803 17..819 4015 100 Plus
CG5445-PA 912 CG5445-RA 1..803 17..819 4015 100 Plus
CG5445-PD 912 CG5445-RD 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1300 13..819 4020 99.9 Plus
CG5445-RF 1740 CG5445-RF 187..993 13..819 4020 99.9 Plus
CG5445-RD 1995 CG5445-RD 442..1248 13..819 4020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 13..493 2390 99.8 Plus
X 23542271 X 17304074..17304370 492..788 1485 100 Plus
Blast to na_te.dros performed 2015-02-12 23:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 114..150 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 108..185 114 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 108..139 111 85.3 Plus
TART-A 13424 TART-A 13424bp 8635..8667 108..140 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1064..1135 113..185 110 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6919 113..185 109 62.7 Plus

BO04283.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:52 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PC 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:02 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-PD 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:28 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 440..1247 10..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:21 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 440..1247 10..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:21 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17304698..17304727 789..818 100   Plus
X 17302909..17303390 10..492 99 -> Plus
X 17304075..17304370 493..788 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:28 Download gff for BO04283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196942..17197423 10..492 99 -> Plus
arm_X 17198108..17198403 493..788 100 -> Plus
arm_X 17198731..17198760 789..818 100   Plus

BO04283.complete Sequence

943 bp (943 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629718

> BO04283.complete
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTGATAACCGCGCACACCCAAGCAAGCTTTCTAGACCAT

BO04283.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 912 CG5445-PG 1..909 17..925 4545 100 Plus
CG5445-RF 912 CG5445-PF 1..909 17..925 4545 100 Plus
CG5445-RD 912 CG5445-PD 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-RG 2047 CG5445-RG 494..1406 13..925 4550 99.9 Plus
CG5445-RF 1740 CG5445-RF 187..1099 13..925 4550 99.9 Plus
CG5445-RD 1995 CG5445-RD 442..1354 13..925 4550 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17302911..17303391 13..493 2390 99.8 Plus
X 23542271 X 17304074..17304370 492..788 1485 100 Plus
X 23542271 X 17304697..17304834 788..925 690 100 Plus
Blast to na_te.dros performed 2014-11-27 13:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2668 114..150 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2420 108..185 114 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2834..2867 108..139 111 85.3 Plus
TART-A 13424 TART-A 13424bp 8635..8667 108..140 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1064..1135 113..185 110 63 Plus

BO04283.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:31 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:14 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 382..1301 10..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:42 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 446..1354 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:31 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RA 382..1301 10..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:46 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
CG5445-RD 446..1354 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:46 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
X 17302915..17303390 17..492 100 -> Plus
X 17304075..17304370 493..788 100 -> Plus
X 17304698..17304834 789..927 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:42 Download gff for BO04283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17196948..17197423 17..492 100 -> Plus
arm_X 17198108..17198403 493..788 100 -> Plus
arm_X 17198731..17198867 789..927 98   Plus

BO04283.pep Sequence

Translation from 16 to 943

> BO04283.pep
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQASFLDH

BO04283.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5445-PG 303 CG5445-PG 1..303 1..303 1626 100 Plus
CG5445-PF 303 CG5445-PF 1..303 1..303 1626 100 Plus
CG5445-PD 303 CG5445-PD 1..303 1..303 1626 100 Plus
CG5445-PA 303 CG5445-PA 1..303 1..303 1626 100 Plus
CG5445-PB 303 CG5445-PB 1..303 1..303 1626 100 Plus