Clone Sequence Records
BO04283.3prime Sequence
933 bp (847 high quality bases) assembled on 2005-12-01
> BO04283.3prime
ATGGTCTAGAAAGCTTGCTTGGGTGTGCGCGGTTATCACGATGTTGATTT
GCGGATAGATATCCGGCTTCACCTCCGACGTAATCAGCTGCACCATCCGC
TGCTGCAGTTCGTCCTGGCTGGCCTGCGTACCGGGCGGTATCATCCAAAT
GGCATCGCCAAAGTACCAGCCATTTGAAGTGCACAGCCGCCACATTGTCG
GCGGCTGCGTGGGCATCATATCGGCCAGGATATCACAAGTTTCGCCCGGA
CGTAGGGCGGGCACATTGATGCGCTGCGTCTGGATGGGCGAGGTCAGATA
GCAGTTGTTCGGCCAGCGCTCGGTGCCATCGTTCTGCAGCTGAAACGCTT
GCTGCTGAGCATTCACTTGCTTCTCCTGGACGATCTTCATCGAAGGCAGC
GACTGTAAGCTGCAGAAGTCCAGATAGCAGCCCACCGCCGTCTGCAGGCT
CCAGTTACTCATCTCTAGGTAAAACCTGGCCGATTCCCGGTTCATCTGGT
TGTTCATTAGGCTCTGAAACTGGCTGATGAGGTCTTCGTGGTCCGTGGTG
CCCATACAGCTGAACTGTTGCAGCAACAGGGAGTCGATATCGAAGTCGTT
CGTCGGTAGACACTTGATCGTGGATGCGGATGCGTTAGCGGTTGTTGCGG
ATGGACTGGGACTCAGATTTGAGTTGGGATTCGCATTCGAATTTGGACTG
TTGTTCGGAGCGGAGTGCGGCCCTGGGGGCGCGGGCAGGGGAATGGCCAT
CATGGGATTTGTGGTTGTTGTTGTATTGGTTGTGAGCCCGAATAACGGTT
CACATTGCATCTGTTGTTGCTGCTGCTGCTGGCTGTCCGAATTTGGATTC
GGATTCGGATTTAGATTCAGATTCATGTTCATGTTCTGCATCTCGGCGGC
GTTTTCGTAGTTCTCCTCCACATCCATGTCGAC
BO04283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PB | 912 | CG5445-RB | 1..909 | 927..19 | 4545 | 100 | Minus |
CG5445-PC | 912 | CG5445-RC | 1..909 | 927..19 | 4545 | 100 | Minus |
CG5445-PA | 912 | CG5445-RA | 1..909 | 927..19 | 4545 | 100 | Minus |
CG5445-PD | 912 | CG5445-RD | 1..909 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1406 | 931..19 | 4550 | 99.9 | Minus |
CG5445-RF | 1740 | CG5445-RF | 187..1099 | 931..19 | 4550 | 99.9 | Minus |
CG5445-RD | 1995 | CG5445-RD | 442..1354 | 931..19 | 4550 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 931..451 | 2390 | 99.8 | Minus |
X | 23542271 | X | 17304074..17304370 | 452..156 | 1485 | 100 | Minus |
X | 23542271 | X | 17304697..17304834 | 156..19 | 690 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 830..794 | 122 | 81.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 836..759 | 114 | 65.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 836..805 | 111 | 85.3 | Minus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 836..804 | 111 | 81.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 831..759 | 110 | 63 | Minus |
BO04283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:51 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PC | 1..912 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:01 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PD | 1..912 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:00 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 441..1359 | 13..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:17 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 441..1359 | 13..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:17 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17302910..17303390 | 452..933 | 99 | -> | Minus |
X | 17304075..17304370 | 156..451 | 100 | -> | Minus |
X | 17304698..17304839 | 13..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:00 Download gff for
BO04283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17196943..17197423 | 452..933 | 99 | -> | Minus |
arm_X | 17198108..17198403 | 156..451 | 100 | -> | Minus |
arm_X | 17198731..17198872 | 13..155 | 97 | | Minus |
BO04283.5prime Sequence
819 bp (799 high quality bases) assembled on 2005-11-29
> BO04283.5prime
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCA
BO04283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PB | 912 | CG5445-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
CG5445-PC | 912 | CG5445-RC | 1..803 | 17..819 | 4015 | 100 | Plus |
CG5445-PA | 912 | CG5445-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
CG5445-PD | 912 | CG5445-RD | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1300 | 13..819 | 4020 | 99.9 | Plus |
CG5445-RF | 1740 | CG5445-RF | 187..993 | 13..819 | 4020 | 99.9 | Plus |
CG5445-RD | 1995 | CG5445-RD | 442..1248 | 13..819 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 13..493 | 2390 | 99.8 | Plus |
X | 23542271 | X | 17304074..17304370 | 492..788 | 1485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 114..150 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 108..185 | 114 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 108..139 | 111 | 85.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 108..140 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 113..185 | 110 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6919 | 113..185 | 109 | 62.7 | Plus |
BO04283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:52 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PC | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:02 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-PD | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:28 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 440..1247 | 10..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:21 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 440..1247 | 10..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:21 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17304698..17304727 | 789..818 | 100 | | Plus |
X | 17302909..17303390 | 10..492 | 99 | -> | Plus |
X | 17304075..17304370 | 493..788 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:28 Download gff for
BO04283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17196942..17197423 | 10..492 | 99 | -> | Plus |
arm_X | 17198108..17198403 | 493..788 | 100 | -> | Plus |
arm_X | 17198731..17198760 | 789..818 | 100 | | Plus |
BO04283.complete Sequence
943 bp (943 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629718
> BO04283.complete
GAAGTTATCAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCG
AGATGCAGAACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCA
AATTCGGACAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTT
ATTCGGGCTCACAACCAATACAACAACAACCACAAATCCCATGATGGCCA
TTCCCCTGCCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCA
AATTCGAATGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAAC
AACCGCTAACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACT
TCGATATCGACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACG
GACCACGAAGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGAT
GAACCGGGAATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGC
AGACGGCGGTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCT
TCGATGAAGATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTT
TCAGCTGCAGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGA
CCTCGCCCATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGC
GAAACTTGTGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAAT
GTGGCGGCTGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGA
TGATACCGCCCGGTACGCAGGCCAGCCAGGACGAACTGCAGCAGCGGATG
GTGCAGCTGATTACGTCGGAGGTGAAGCCGGATATCTATCCGCAAATCAA
CATCGTGATAACCGCGCACACCCAAGCAAGCTTTCTAGACCAT
BO04283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 912 | CG5445-PG | 1..909 | 17..925 | 4545 | 100 | Plus |
CG5445-RF | 912 | CG5445-PF | 1..909 | 17..925 | 4545 | 100 | Plus |
CG5445-RD | 912 | CG5445-PD | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-RG | 2047 | CG5445-RG | 494..1406 | 13..925 | 4550 | 99.9 | Plus |
CG5445-RF | 1740 | CG5445-RF | 187..1099 | 13..925 | 4550 | 99.9 | Plus |
CG5445-RD | 1995 | CG5445-RD | 442..1354 | 13..925 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17302911..17303391 | 13..493 | 2390 | 99.8 | Plus |
X | 23542271 | X | 17304074..17304370 | 492..788 | 1485 | 100 | Plus |
X | 23542271 | X | 17304697..17304834 | 788..925 | 690 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 114..150 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 108..185 | 114 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 108..139 | 111 | 85.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 8635..8667 | 108..140 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 113..185 | 110 | 63 | Plus |
BO04283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:31 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:14 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 382..1301 | 10..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:42 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 446..1354 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:31 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RA | 382..1301 | 10..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:46 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5445-RD | 446..1354 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:46 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17302915..17303390 | 17..492 | 100 | -> | Plus |
X | 17304075..17304370 | 493..788 | 100 | -> | Plus |
X | 17304698..17304834 | 789..927 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:42 Download gff for
BO04283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17196948..17197423 | 17..492 | 100 | -> | Plus |
arm_X | 17198108..17198403 | 493..788 | 100 | -> | Plus |
arm_X | 17198731..17198867 | 789..927 | 98 | | Plus |
BO04283.pep Sequence
Translation from 16 to 943
> BO04283.pep
MDVEENYENAAEMQNMNMNLNLNPNPNPNSDSQQQQQQQMQCEPLFGLTT
NTTTTTNPMMAIPLPAPPGPHSAPNNSPNSNANPNSNLSPSPSATTANAS
ASTIKCLPTNDFDIDSLLLQQFSCMGTTDHEDLISQFQSLMNNQMNRESA
RFYLEMSNWSLQTAVGCYLDFCSLQSLPSMKIVQEKQVNAQQQAFQLQND
GTERWPNNCYLTSPIQTQRINVPALRPGETCDILADMMPTQPPTMWRLCT
SNGWYFGDAIWMIPPGTQASQDELQQRMVQLITSEVKPDIYPQINIVITA
HTQASFLDH
BO04283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5445-PG | 303 | CG5445-PG | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PF | 303 | CG5445-PF | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PD | 303 | CG5445-PD | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PA | 303 | CG5445-PA | 1..303 | 1..303 | 1626 | 100 | Plus |
CG5445-PB | 303 | CG5445-PB | 1..303 | 1..303 | 1626 | 100 | Plus |