Clone Sequence Records
BO04284.3prime Sequence
913 bp (883 high quality bases) assembled on 2005-12-01
> BO04284.3prime
ATGGTCTAGAAAGCTTGCGAATAGATTAGCAAAGAAATCATAAATCCGCT
CACGCAAAGATGTGGGTTTTAGGGCGGAGGACGACTCGCTGGAGAAAGCA
AAAGGCTTCTCGACCAAAACCGGAGACACTGCATCCAAGGTGTCGTCGAA
CTTGACGCGCTTTTTCTGCGGCGGCGTGCAGATCTCCTCATGACTCTTTA
AATGCACAGGGAACATATTGTCCCCGTTGAACAGATCCTCTCGCTTTACA
AATGTTGGTATGGTGTTGTCCACATTGTGGGCCCTGAAATACGATTTGGA
ATCGGAGTAGCGACTGGCAAAGCCGTAGCTTGGATCGTGATCATTGTTAG
GCGCCGGTACATTGCTGCGTTTGAGGATGCCGCGTACATTGGCCACCTTG
TCACCGGCAGCAATCTTTTTGTACAACTTTGAGATGCGGTTCTCCTTGCT
GGCGGTGGCCAGCTCTCCAGGCCTTCCCGGCTGGTGGCGCATCTGCACTG
CCGGAGGCGGTGGAGGAGCTGGTGGTGGTGGTGCAACACGTTTCATGGAA
ACAGAGGAGGAGGAGGAGGAGGAGGCCTTTCCCATTGGATTTCCATTTGG
AGCCCTTAAAATTCCACTGGCCACTTTTCGCTTTCGAGAAAAGCAAGCAC
TGTCCTCGGTCTCCTCTTCGGAATCCGTGCTGCGATTCTTATTGCGGAAA
ACCGTATCATATTCGCATTTGCGCTTATTGGGACTCAGTACATAATCAGC
TCCGAACTTCTTCATGTCCTTCTTGCGTATGGGCGTTCTTTTGCTCGAGT
CCTTTCGCAGTGTCTTTCGGCACTGAACGTGCAGATCGATGGCATCGCGG
ATGAAGCCCACCCAAGTGCGCGACAGCTGCACATCGCCGCTACCGAAGAT
TATGCCATCACTT
BO04284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8606-PA | 1944 | RhoGEF4-RA | 1047..1941 | 913..19 | 4475 | 100 | Minus |
| CG8606-PB | 1803 | RhoGEF4-RB | 906..1800 | 913..19 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RB | 1933 | CG8606-RB | 949..1843 | 913..19 | 4475 | 100 | Minus |
| RhoGEF4-RA | 2132 | CG8606-RA | 1148..2042 | 913..19 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7321189..7321884 | 19..714 | 3480 | 100 | Plus |
| 3L | 28110227 | 3L | 7321943..7322142 | 714..913 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:30:46 has no hits.
BO04284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:53 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PB | 906..1803 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:04 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PB | 906..1803 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:45 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 1148..2042 | 19..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:41 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 1148..2042 | 19..913 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:41 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7321189..7321884 | 19..714 | 100 | <- | Plus |
| 3L | 7321944..7322142 | 715..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:45 Download gff for
BO04284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7314289..7314984 | 19..714 | 100 | <- | Plus |
| arm_3L | 7315044..7315242 | 715..913 | 100 | | Plus |
BO04284.5prime Sequence
876 bp (763 high quality bases) assembled on 2005-12-01
> BO04284.5prime
GAAGTTATCAGTCGACATGTTTACGCCCAGGCAGAAAGGATACGGGAATG
GCTTCATTCACTCGCCACAAACACCTCTCAGCTTCAGCCGGGAACTGCGG
CAGGTGCTGCAGGAGCGGAATCTTCTAACTGCCAAGTCGCGTAGGAAAGT
TTGCTCCATGCTGGACAGCAACAACAGCAGTCCGATTGGCTCCCCCAATC
CGGACGCGGGAAAAAGATTGGGTTTCCGTCGCCAGGCCATCCAGGAGATT
ATTTCGTCGGAGAAATCGTATCTGGAGCAGCTGGAGCTGCTGATGAACTT
TTTTGTGCGTCCCTTGAAGGAACAGGCTATCATCGATTGCTCCAATCACA
CGCTGCTCTTCGGTCAAATCGAGATGATTCACAATCTTAACGGAGAATTC
CTGCGCGAACTGGAGGCGAACATGGAGAATGTTGCGCACGCATTCCTGAA
AATGGCTCCTTTCTTCAAACTGTACTCGGTGTACGCCTTTGACTACCGCG
GAGCTCTGTTCATCATCCAGGATTTGATCAGCAAGAATCCGGTGTTCCGA
AAGTTTCTGGAGCAGACCGAGAGTCGTCCGGAGGTGCAACGCAAGCTAAA
TTCGCTGATGATTGTGCCCATCCAGCGGGTACCGCGGTATAAGCTTCTTC
TGGAGCAGGTACTGCTCTACACGAGTCCCGCAGATGCTGACTATAAGTTG
TTGAAAGAATCCGTCAAGGAGATCGAGGCCACCGCCAGTCACATAAACAC
CTGTGTGGAGGAGCANGAAATTACCCAGTATCTGATTCATTTGCAGAACT
CTTTGGTGAATCGCACACCGAACATTGTGAAGCCCTCGCGACGGGAATCA
AGGAGGGTGTACTGCAGAAGATCACT
BO04284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8606-PA | 1944 | RhoGEF4-RA | 1..829 | 17..845 | 4126 | 99.8 | Plus |
| CG8606-PB | 1803 | RhoGEF4-RB | 1..688 | 158..845 | 3421 | 99.8 | Plus |
| CG8606-PA | 1944 | RhoGEF4-RA | 831..861 | 846..876 | 155 | 100 | Plus |
| CG8606-PB | 1803 | RhoGEF4-RB | 690..720 | 846..876 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 2132 | CG8606-RA | 102..962 | 17..876 | 4269 | 99.8 | Plus |
| RhoGEF4-RB | 1933 | CG8606-RB | 34..763 | 148..876 | 3614 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7322555..7323114 | 707..148 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 7322328..7322499 | 876..706 | 799 | 98.8 | Minus |
| 3L | 28110227 | 3L | 7323178..7323310 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:53 has no hits.
BO04284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:54 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PA | 1..861 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:05 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8606-PA | 1..861 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:32:48 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..962 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:44 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..962 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:44 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7323178..7323310 | 17..149 | 100 | | Minus |
| 3L | 7322328..7322497 | 708..876 | 98 | <- | Minus |
| 3L | 7322555..7323112 | 150..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:32:48 Download gff for
BO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7315428..7315597 | 708..876 | 98 | <- | Minus |
| arm_3L | 7315655..7316212 | 150..707 | 100 | <- | Minus |
| arm_3L | 7316278..7316410 | 17..149 | 100 | | Minus |
BO04284.complete Sequence
1975 bp assembled on 2008-08-14
GenBank Submission: FJ629719
> BO04284.complete
GAAGTTATCAGTCGACATGTTTACGCCCAGGCAGAAAGGATACGGGAATG
GCTTCATTCACTCGCCACAAACACCTCTCAGCTTCAGCCGGGAACTGCGG
CAGGTGCTGCAGGAGCGGAATCTTCTAACTGCCAAGTCGCGTAGGAAAGT
TTGCTCCATGCTGGACAGCAACAACAGCAGTCCGATTGGCTCCCCCAATC
CGGACGCGGGAAAAAGATTGGGTTTCCGTCGCCAGGCCATCCAGGAGATT
ATTTCGTCGGAGAAATCGTATCTGGAGCAGCTGGAGCTGCTGATGAACTT
TTTTGTGCGTCCCTTGAAGGAACAGGCTATCATCGATTGCTCCAATCACA
CGCTGCTCTTCGGTCAAATCGAGATGATTCACAATCTTAACGGAGAATTC
CTGCGCGAACTGGAGGCGAACATGGAGAATGTTGCGCACGCATTCCTGAA
AATGGCTCCTTTCTTCAAACTGTACTCGGTGTACGCCTTTGACTACCGCG
GAGCTCTGTTCATCATCCAGGATTTGATCAGCAAGAATCCGGTGTTCCGA
AAGTTTCTGGAGCAGACCGAGAGTCGTCCGGAGGTGCAACGCAAGCTAAA
TTCGCTGATGATTGTGCCCATCCAGCGGGTACCGCGGTATAAGCTTCTTC
TGGAGCAGGTACTGCTCTACACGAGTCCCGCAGATGCTGACTATAAGTTG
TTGAAAGAATCCGTCAAGGAGATCGAGGCCACCGCCAGTCACATAAACAC
CTGTGTGGAGGAGCAGGAAATTACCCAGTATCTGATTCATTTGCAGAACT
CTTTGGTGAATCGCACACCGAACATTGTGAAGCCCTCGCGACGGGTAATC
AAGGAGGGTGTACTGCAGAAGATCACTCACAAGGGCACGGAAATCAAGCG
CTACTGTGTTCTCATGTCCGACATCTTCATGTACTGCAAGATGATCAAGG
AACGTGCGCCCAACACCGTTGTGGAAAACTCACTGGAGTGTTGCTGTATT
TTTCCGTTGAAAAAATGCAAAGTGTACGAAATGCTGCCGGGCAACTTTAA
GCTTACTTGCCAAAGTGATGGCATAATCTTCGGTAGCGGCGATGTGCAGC
TGTCGCGCACTTGGGTGGGCTTCATCCGCGATGCCATCGATCTGCACGTT
CAGTGCCGAAAGACACTGCGAAAGGACTCGAGCAAAAGAACGCCCATACG
CAAGAAGGACATGAAGAAGTTCGGAGCTGATTATGTACTGAGTCCCAATA
AGCGCAAATGCGAATATGATACGGTTTTCCGCAATAAGAATCGCAGCACG
GATTCCGAAGAGGAGACCGAGGACAGTGCTTGCTTTTCTCGAAAGCGAAA
AGTGGCCAGTGGAATTTTAAGGGCTCCAAATGGAAATCCAATGGGAAAGG
CCTCCTCCTCCTCCTCCTCCTCTGTTTCCATGAAACGTGTTGCACCACCA
CCACCAGCTCCTCCACCGCCTCCGGCAGTGCAGATGCGCCACCAGCCGGG
AAGGCCTGGAGAGCTGGCCACCGCCAGCAAGGAGAACCGCATCTCAAAGT
TGTACAAAAAGATTGCTGCCGGTGACAAGGTGGCCAATGTACGCGGCATC
CTCAAACGCAGCAATGTACCGGCGCCTAACAATGATCACGATCCAAGCTA
CGGCTTTGCCAGTCGCTACTCCGATTCCAAATCGTATTTCAGGGCCCACA
ATGTGGACAACACCATACCAACATTTGTAAAGCGAGAGGATCTGTTCAAC
GGGGACAATATGTTCCCTGTGCATTTAAAGAGTCATGAGGAGATCTGCAC
GCCGCCGCAGAAAAAGCGCGTCAAGTTCGACGACACCTTGGATGCAGTGT
CTCCGGTTTTGGTCGAGAAGCCTTTTGCTTTCTCCAGCGAGTCGTCCTCC
GCCCTAAAACCCACATCTTTGCGTGAGCGGATTTATGATTTCTTTGCTAA
TCTATTCGCAAGCTTTCTAGACCAT
BO04284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 1944 | CG8606-PA | 1..1941 | 17..1957 | 9705 | 100 | Plus |
| RhoGEF4-RB | 1803 | CG8606-PB | 1..1800 | 158..1957 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 2132 | CG8606-RA | 102..2042 | 17..1957 | 9705 | 100 | Plus |
| RhoGEF4-RB | 1933 | CG8606-RB | 34..1843 | 148..1957 | 9050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7321189..7321884 | 1957..1262 | 3480 | 100 | Minus |
| 3L | 28110227 | 3L | 7322555..7323114 | 707..148 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 7321943..7322499 | 1262..706 | 2785 | 100 | Minus |
| 3L | 28110227 | 3L | 7323178..7323310 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:53 has no hits.
BO04284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:57 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 100..2040 | 17..1957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:02 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 108..2042 | 23..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:39 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 106..2040 | 23..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:43 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 108..2042 | 23..1959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:43 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7321187..7321884 | 1262..1959 | 99 | <- | Minus |
| 3L | 7321944..7322497 | 708..1261 | 100 | <- | Minus |
| 3L | 7322555..7323112 | 150..707 | 100 | <- | Minus |
| 3L | 7323178..7323304 | 23..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:02 Download gff for
BO04284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7314287..7314984 | 1262..1959 | 99 | <- | Minus |
| arm_3L | 7315044..7315597 | 708..1261 | 100 | <- | Minus |
| arm_3L | 7315655..7316212 | 150..707 | 100 | <- | Minus |
| arm_3L | 7316278..7316404 | 23..149 | 100 | | Minus |
BO04284.pep Sequence
Translation from 16 to 1975
> BO04284.pep
MFTPRQKGYGNGFIHSPQTPLSFSRELRQVLQERNLLTAKSRRKVCSMLD
SNNSSPIGSPNPDAGKRLGFRRQAIQEIISSEKSYLEQLELLMNFFVRPL
KEQAIIDCSNHTLLFGQIEMIHNLNGEFLRELEANMENVAHAFLKMAPFF
KLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQTESRPEVQRKLNSLMIV
PIQRVPRYKLLLEQVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQ
EITQYLIHLQNSLVNRTPNIVKPSRRVIKEGVLQKITHKGTEIKRYCVLM
SDIFMYCKMIKERAPNTVVENSLECCCIFPLKKCKVYEMLPGNFKLTCQS
DGIIFGSGDVQLSRTWVGFIRDAIDLHVQCRKTLRKDSSKRTPIRKKDMK
KFGADYVLSPNKRKCEYDTVFRNKNRSTDSEEETEDSACFSRKRKVASGI
LRAPNGNPMGKASSSSSSSVSMKRVAPPPPAPPPPPAVQMRHQPGRPGEL
ATASKENRISKLYKKIAAGDKVANVRGILKRSNVPAPNNDHDPSYGFASR
YSDSKSYFRAHNVDNTIPTFVKREDLFNGDNMFPVHLKSHEEICTPPQKK
RVKFDDTLDAVSPVLVEKPFAFSSESSSALKPTSLRERIYDFFANLFASF
LDH
BO04284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-PA | 647 | CG8606-PA | 1..647 | 1..647 | 3358 | 100 | Plus |
| RhoGEF4-PB | 600 | CG8606-PB | 1..600 | 48..647 | 3114 | 100 | Plus |
| sif-PL | 1270 | CG34418-PL | 643..908 | 72..308 | 193 | 25.7 | Plus |
| sif-PA | 2052 | CG34418-PA | 1418..1683 | 72..308 | 193 | 25.7 | Plus |
| sif-PC | 2061 | CG34418-PC | 1427..1692 | 72..308 | 193 | 25.7 | Plus |
