Clone Sequence Records
BO04285.3prime Sequence
728 bp (727 high quality bases) assembled on 2005-12-01
> BO04285.3prime
ATGGTCTAGAAAGCTTGCGTTTTGTATAGCTTTTTTCTGTGTTTTTGGCT
CCTCCTCGCTGTCGTCAGAGTCAGAGTCGGATCCAGAGATGTCATCGTCT
ATCCAGAGTGTGCCCTTTTTCTTCTTTTTTGCCTTGGTCTTGTCTACGGC
GGGGGATTTCCTCTTTGTGCCACTGGAAGTTGCTTCCTCGACGCCTTTCT
CCTTGTTCTCCTCGGCCTGCTTGAGTCCCTCCTCGAAGGCGTCGTTTACC
TTCTCGGTCAGATTAGCCCTGGCTTCCTCGTACTTATCGTCCTTAAAGTC
GTGCTTGGGCACGGCCAGCAGTTTCTCGATTTTTCGCTTTTTACGCTCCT
CGGCCTCCCGTTCCCGTTCGCCCTGCTTCTCCAGCCAGGCGCGCACCCGC
TTCTCCTCGTTGATATCCCGCAAACGGCGACCACTTAGATCGCGGCAAGC
CTCGCGATTGGTTGTCTTTTCAATTTGCGCACCAATGGCTCGAAGCATGG
AACCAAATCCTCCTTTGCCACCGAGCTGGCGGAGAACGCAGTGAACATCT
CCAGATGAAATTTCTCCCTCCAAGCGCTTGCCATTGCTGACTAAGTAGTA
TTCCCCTGGTTGCAGGTTTGTTTTCTCCGCAATCCGACTGTAAAGCTCAT
CACATTTAACGTGATCTCCACAAGAAATTATATATTTACTGTTTATAAAA
ATATTTATGCCCATGTCGACTGATAACT
BO04285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-PA | 699 | CG5986-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-RB | 813 | CG5986-RB | 29..730 | 720..19 | 3495 | 99.9 | Minus |
CG5986-RA | 1321 | CG5986-RA | 537..1238 | 720..19 | 3495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24048486..24049085 | 618..19 | 3000 | 100 | Minus |
3R | 32079331 | 3R | 24048326..24048427 | 720..619 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:24:27 has no hits.
BO04285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:55 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:07 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:03 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 532..1238 | 19..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:07 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 532..1238 | 19..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:07 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24048321..24048427 | 619..728 | 95 | -> | Minus |
3R | 24048486..24049085 | 19..618 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:03 Download gff for
BO04285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19874043..19874149 | 619..728 | 95 | -> | Minus |
arm_3R | 19874208..19874807 | 19..618 | 100 | | Minus |
BO04285.5prime Sequence
728 bp (727 high quality bases) assembled on 2005-11-29
> BO04285.5prime
GAAGTTATCAGTCGACATGGGCATAAATATTTTTATAAACAGTAAATATA
TAATTTCTTGTGGAGATCACGTTAAATGTGATGAGCTTTACAGTCGGATT
GCGGAGAAAACAAACCTGCAACCAGGGGAATACTACTTAGTCAGCAATGG
CAAGCGCTTGGAGGGAGAAATTTCATCTGGAGATGTTCACTGCGTTCTCC
GCCAGCTCGGTGGCAAAGGAGGATTTGGTTCCATGCTTCGAGCCATTGGT
GCGCAAATTGAAAAGACAACCAATCGCGAGGCTTGCCGCGATCTAAGTGG
TCGCCGTTTGCGGGATATCAACGAGGAGAAGCGGGTGCGCGCCTGGCTGG
AGAAGCAGGGCGAACGGGAACGGGAGGCCGAGGAGCGTAAAAAGCGAAAA
ATCGAGAAACTGCTGGCCGTGCCCAAGCACGACTTTAAGGACGATAAGTA
CGAGGAAGCCAGGGCTAATCTGACCGAGAAGGTAAACGACGCCTTCGAGG
AGGGACTCAAGCAGGCCGAGGAGAACAAGGAGAAAGGCGTCGAGGAAGCA
ACTTCCAGTGGCACAAAGAGGAAATCCCCCGCCGTAGACAAGACCAAGGC
AAAAAAGAAGAAAAAGGGCACACTCTGGATAGACGATGACATCTCTGGAT
CCGACTCTGACTCTGACGACAGCGAGGAGGAGCCAAAAACACAGAAAAAA
GCTATACAAAACGCAAGCTTTCTAGACC
BO04285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-PA | 699 | CG5986-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-RB | 813 | CG5986-RB | 29..730 | 11..712 | 3495 | 99.9 | Plus |
CG5986-RA | 1321 | CG5986-RA | 537..1238 | 11..712 | 3495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24048486..24049085 | 113..712 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 24048326..24048427 | 11..112 | 495 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:31:10 has no hits.
BO04285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:56 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:08 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:29 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 531..1238 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:51 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 531..1238 | 2..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:51 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24048320..24048427 | 2..112 | 95 | -> | Plus |
3R | 24048486..24049085 | 113..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:29 Download gff for
BO04285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19874042..19874149 | 2..112 | 95 | -> | Plus |
arm_3R | 19874208..19874807 | 113..712 | 100 | | Plus |
BO04285.complete Sequence
730 bp (730 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629720
> BO04285.complete
GAAGTTATCAGTCGACATGGGCATAAATATTTTTATAAACAGTAAATATA
TAATTTCTTGTGGAGATCACGTTAAATGTGATGAGCTTTACAGTCGGATT
GCGGAGAAAACAAACCTGCAACCAGGGGAATACTACTTAGTCAGCAATGG
CAAGCGCTTGGAGGGAGAAATTTCATCTGGAGATGTTCACTGCGTTCTCC
GCCAGCTCGGTGGCAAAGGAGGATTTGGTTCCATGCTTCGAGCCATTGGT
GCGCAAATTGAAAAGACAACCAATCGCGAGGCTTGCCGCGATCTAAGTGG
TCGCCGTTTGCGGGATATCAACGAGGAGAAGCGGGTGCGCGCCTGGCTGG
AGAAGCAGGGCGAACGGGAACGGGAGGCCGAGGAGCGTAAAAAGCGAAAA
ATCGAGAAACTGCTGGCCGTGCCCAAGCACGACTTTAAGGACGATAAGTA
CGAGGAAGCCAGGGCTAATCTGACCGAGAAGGTAAACGACGCCTTCGAGG
AGGGACTCAAGCAGGCCGAGGAGAACAAGGAGAAAGGCGTCGAGGAAGCA
ACTTCCAGTGGCACAAAGAGGAAATCCCCCGCCGTAGACAAGACCAAGGC
AAAAAAGAAGAAAAAGGGCACACTCTGGATAGACGATGACATCTCTGGAT
CCGACTCTGACTCTGACGACAGCGAGGAGGAGCCAAAAACACAGAAAAAA
GCTATACAAAACGCAAGCTTTCTAGACCAT
BO04285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-RB | 699 | CG5986-PB | 1..696 | 17..712 | 3480 | 100 | Plus |
CG5986-RA | 699 | CG5986-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-RB | 813 | CG5986-RB | 29..730 | 11..712 | 3495 | 99.9 | Plus |
CG5986-RA | 1321 | CG5986-RA | 537..1238 | 11..712 | 3495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24048486..24049085 | 113..712 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 24048326..24048427 | 11..112 | 495 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:50:21 has no hits.
BO04285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:13 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:32 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 531..1238 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:12 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 543..1238 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:13 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 531..1238 | 2..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:15 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5986-RA | 543..1238 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:15 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24048332..24048427 | 17..112 | 100 | -> | Plus |
3R | 24048486..24049085 | 113..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:12 Download gff for
BO04285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19874054..19874149 | 17..112 | 100 | -> | Plus |
arm_3R | 19874208..19874807 | 113..714 | 99 | | Plus |
BO04285.pep Sequence
Translation from 16 to 730
> BO04285.pep
MGINIFINSKYIISCGDHVKCDELYSRIAEKTNLQPGEYYLVSNGKRLEG
EISSGDVHCVLRQLGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRD
INEEKRVRAWLEKQGEREREAEERKKRKIEKLLAVPKHDFKDDKYEEARA
NLTEKVNDAFEEGLKQAEENKEKGVEEATSSGTKRKSPAVDKTKAKKKKK
GTLWIDDDISGSDSDSDDSEEEPKTQKKAIQNASFLDH
BO04285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5986-PB | 232 | CG5986-PB | 1..232 | 1..232 | 1196 | 100 | Plus |
CG5986-PA | 232 | CG5986-PA | 1..232 | 1..232 | 1196 | 100 | Plus |