Clone BO04285 Report

Search the DGRC for BO04285

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5986-RA
Protein status:BO04285.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO04285.3prime Sequence

728 bp (727 high quality bases) assembled on 2005-12-01

> BO04285.3prime
ATGGTCTAGAAAGCTTGCGTTTTGTATAGCTTTTTTCTGTGTTTTTGGCT
CCTCCTCGCTGTCGTCAGAGTCAGAGTCGGATCCAGAGATGTCATCGTCT
ATCCAGAGTGTGCCCTTTTTCTTCTTTTTTGCCTTGGTCTTGTCTACGGC
GGGGGATTTCCTCTTTGTGCCACTGGAAGTTGCTTCCTCGACGCCTTTCT
CCTTGTTCTCCTCGGCCTGCTTGAGTCCCTCCTCGAAGGCGTCGTTTACC
TTCTCGGTCAGATTAGCCCTGGCTTCCTCGTACTTATCGTCCTTAAAGTC
GTGCTTGGGCACGGCCAGCAGTTTCTCGATTTTTCGCTTTTTACGCTCCT
CGGCCTCCCGTTCCCGTTCGCCCTGCTTCTCCAGCCAGGCGCGCACCCGC
TTCTCCTCGTTGATATCCCGCAAACGGCGACCACTTAGATCGCGGCAAGC
CTCGCGATTGGTTGTCTTTTCAATTTGCGCACCAATGGCTCGAAGCATGG
AACCAAATCCTCCTTTGCCACCGAGCTGGCGGAGAACGCAGTGAACATCT
CCAGATGAAATTTCTCCCTCCAAGCGCTTGCCATTGCTGACTAAGTAGTA
TTCCCCTGGTTGCAGGTTTGTTTTCTCCGCAATCCGACTGTAAAGCTCAT
CACATTTAACGTGATCTCCACAAGAAATTATATATTTACTGTTTATAAAA
ATATTTATGCCCATGTCGACTGATAACT

BO04285.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-PA 699 CG5986-RA 1..696 714..19 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-RB 813 CG5986-RB 29..730 720..19 3495 99.9 Minus
CG5986-RA 1321 CG5986-RA 537..1238 720..19 3495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24048486..24049085 618..19 3000 100 Minus
3R 32079331 3R 24048326..24048427 720..619 495 99 Minus
Blast to na_te.dros performed on 2015-02-11 02:24:27 has no hits.

BO04285.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:55 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:07 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:03 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 532..1238 19..728 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:07 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 532..1238 19..728 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:07 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24048321..24048427 619..728 95 -> Minus
3R 24048486..24049085 19..618 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:03 Download gff for BO04285.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19874043..19874149 619..728 95 -> Minus
arm_3R 19874208..19874807 19..618 100   Minus

BO04285.5prime Sequence

728 bp (727 high quality bases) assembled on 2005-11-29

> BO04285.5prime
GAAGTTATCAGTCGACATGGGCATAAATATTTTTATAAACAGTAAATATA
TAATTTCTTGTGGAGATCACGTTAAATGTGATGAGCTTTACAGTCGGATT
GCGGAGAAAACAAACCTGCAACCAGGGGAATACTACTTAGTCAGCAATGG
CAAGCGCTTGGAGGGAGAAATTTCATCTGGAGATGTTCACTGCGTTCTCC
GCCAGCTCGGTGGCAAAGGAGGATTTGGTTCCATGCTTCGAGCCATTGGT
GCGCAAATTGAAAAGACAACCAATCGCGAGGCTTGCCGCGATCTAAGTGG
TCGCCGTTTGCGGGATATCAACGAGGAGAAGCGGGTGCGCGCCTGGCTGG
AGAAGCAGGGCGAACGGGAACGGGAGGCCGAGGAGCGTAAAAAGCGAAAA
ATCGAGAAACTGCTGGCCGTGCCCAAGCACGACTTTAAGGACGATAAGTA
CGAGGAAGCCAGGGCTAATCTGACCGAGAAGGTAAACGACGCCTTCGAGG
AGGGACTCAAGCAGGCCGAGGAGAACAAGGAGAAAGGCGTCGAGGAAGCA
ACTTCCAGTGGCACAAAGAGGAAATCCCCCGCCGTAGACAAGACCAAGGC
AAAAAAGAAGAAAAAGGGCACACTCTGGATAGACGATGACATCTCTGGAT
CCGACTCTGACTCTGACGACAGCGAGGAGGAGCCAAAAACACAGAAAAAA
GCTATACAAAACGCAAGCTTTCTAGACC

BO04285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-PA 699 CG5986-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-RB 813 CG5986-RB 29..730 11..712 3495 99.9 Plus
CG5986-RA 1321 CG5986-RA 537..1238 11..712 3495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24048486..24049085 113..712 3000 100 Plus
3R 32079331 3R 24048326..24048427 11..112 495 99 Plus
Blast to na_te.dros performed on 2015-02-13 05:31:10 has no hits.

BO04285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:56 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:08 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:29 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 531..1238 2..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:51 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 531..1238 2..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:51 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24048320..24048427 2..112 95 -> Plus
3R 24048486..24049085 113..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:29 Download gff for BO04285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19874042..19874149 2..112 95 -> Plus
arm_3R 19874208..19874807 113..712 100   Plus

BO04285.complete Sequence

730 bp (730 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629720

> BO04285.complete
GAAGTTATCAGTCGACATGGGCATAAATATTTTTATAAACAGTAAATATA
TAATTTCTTGTGGAGATCACGTTAAATGTGATGAGCTTTACAGTCGGATT
GCGGAGAAAACAAACCTGCAACCAGGGGAATACTACTTAGTCAGCAATGG
CAAGCGCTTGGAGGGAGAAATTTCATCTGGAGATGTTCACTGCGTTCTCC
GCCAGCTCGGTGGCAAAGGAGGATTTGGTTCCATGCTTCGAGCCATTGGT
GCGCAAATTGAAAAGACAACCAATCGCGAGGCTTGCCGCGATCTAAGTGG
TCGCCGTTTGCGGGATATCAACGAGGAGAAGCGGGTGCGCGCCTGGCTGG
AGAAGCAGGGCGAACGGGAACGGGAGGCCGAGGAGCGTAAAAAGCGAAAA
ATCGAGAAACTGCTGGCCGTGCCCAAGCACGACTTTAAGGACGATAAGTA
CGAGGAAGCCAGGGCTAATCTGACCGAGAAGGTAAACGACGCCTTCGAGG
AGGGACTCAAGCAGGCCGAGGAGAACAAGGAGAAAGGCGTCGAGGAAGCA
ACTTCCAGTGGCACAAAGAGGAAATCCCCCGCCGTAGACAAGACCAAGGC
AAAAAAGAAGAAAAAGGGCACACTCTGGATAGACGATGACATCTCTGGAT
CCGACTCTGACTCTGACGACAGCGAGGAGGAGCCAAAAACACAGAAAAAA
GCTATACAAAACGCAAGCTTTCTAGACCAT

BO04285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-RB 699 CG5986-PB 1..696 17..712 3480 100 Plus
CG5986-RA 699 CG5986-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-RB 813 CG5986-RB 29..730 11..712 3495 99.9 Plus
CG5986-RA 1321 CG5986-RA 537..1238 11..712 3495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24048486..24049085 113..712 3000 100 Plus
3R 32079331 3R 24048326..24048427 11..112 495 99 Plus
Blast to na_te.dros performed on 2014-11-27 16:50:21 has no hits.

BO04285.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:13 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:00:32 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 531..1238 2..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:12 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 543..1238 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:13 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 531..1238 2..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:15 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
CG5986-RA 543..1238 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:15 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24048332..24048427 17..112 100 -> Plus
3R 24048486..24049085 113..714 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:12 Download gff for BO04285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19874054..19874149 17..112 100 -> Plus
arm_3R 19874208..19874807 113..714 99   Plus

BO04285.pep Sequence

Translation from 16 to 730

> BO04285.pep
MGINIFINSKYIISCGDHVKCDELYSRIAEKTNLQPGEYYLVSNGKRLEG
EISSGDVHCVLRQLGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRD
INEEKRVRAWLEKQGEREREAEERKKRKIEKLLAVPKHDFKDDKYEEARA
NLTEKVNDAFEEGLKQAEENKEKGVEEATSSGTKRKSPAVDKTKAKKKKK
GTLWIDDDISGSDSDSDDSEEEPKTQKKAIQNASFLDH

BO04285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5986-PB 232 CG5986-PB 1..232 1..232 1196 100 Plus
CG5986-PA 232 CG5986-PA 1..232 1..232 1196 100 Plus