Clone Sequence Records
BO04286.3prime Sequence
897 bp (875 high quality bases) assembled on 2005-12-01
> BO04286.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGCAAACTGTATTACGCCATACTCGC
CAGTCAACATCCACTCCTTATCCTTGGCAAACAGTTGGTCCGCCACGCCT
GCACCCAATCCGCAGATCAGATCCGCTTTAATTGTGCGCAGAGTGCAGAG
ATTGGAAGGACGAAAGCCCCTCAAGCAAGTTTCGAAGGACTCCGTGCTGT
CCCAGGAGAAGTCGCCTAACAACTTGCGATAGTTGAGGTCACCCTTGAAG
ATAACCAGTTGCGCCTCCTTCAGGCGGTCGTAGAGTGAGGGATTTACCTC
TGGCATGCGATAGAACTCGTAGGGACTCGTCCAAAAGTGTTCCAGTGGCG
AAAGCTCGAACTTGCCCTCGGTCGTCAAACGCTGCCATTTTTTTCCGACC
TCACTCAGCACAGGATCCGGATGGTCGGCCAGAAATTGAAGTGCCCAGTG
GAAGTCGTGCTCCATCACGTCCGAAATGAACCAAGGAATGGCCTTGGGAT
TGAAGCGCACCTTGGCAGCCAATCCCTTGTCGATAATGTACTCAGCCAGA
ATGAGATCCGTGTACAGCTCATAGCCGGCGTTGTCGAAAATGATGTCCAC
AATGCCCTCTCCGGAGGCTCCGTCCAGGGCTTTCCATACCTCCGCGGTGC
CGTCGATTAGTAGCTTCTCCTCCAAATCCGTAACTTGGTCAAAGGCATTG
CCAGTGGGCTTCACCTGTTTGCCGGAGGTTATGGACAGATCGCATCGGTT
GCCCCACAAATTGAGTTTGATCAACTGGCGGAAGGTGTCCGAGTTTCGTT
CATTGTGCCGCGTAGCCTTGGCCACCGCCAGCATGGCGTCCACGCTCAGT
TTGGTCGCCGTCTGTTTCTGCTGGCTGAAGTAGTCGTAGGCGGCCAG
BO04286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-PB | 1308 | CG11474-RB | 427..1305 | 897..19 | 4395 | 100 | Minus |
CG11474-PA | 1311 | CG11474-RA | 430..1308 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1776 | CG11474-RC | 573..1451 | 897..19 | 4395 | 100 | Minus |
CG11474-RA | 1520 | CG11474-RA | 498..1376 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22071765..22072495 | 167..897 | 3655 | 100 | Plus |
2R | 25286936 | 2R | 22071559..22071708 | 19..168 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:20:14 has no hits.
BO04286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:57 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 430..1311 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:09 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 430..1311 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:10 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 498..1376 | 19..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:11 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 498..1376 | 19..897 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:11 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22071559..22071707 | 19..167 | 100 | <- | Plus |
2R | 22071766..22072495 | 168..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:10 Download gff for
BO04286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17959064..17959212 | 19..167 | 100 | <- | Plus |
arm_2R | 17959271..17960000 | 168..897 | 100 | | Plus |
BO04286.5prime Sequence
846 bp (809 high quality bases) assembled on 2005-11-29
> BO04286.5prime
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCC
BO04286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-PA | 1311 | CG11474-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG11474-PB | 1308 | CG11474-RB | 203..827 | 222..846 | 3125 | 100 | Plus |
CG11474-PB | 1308 | CG11474-RB | 1..196 | 17..212 | 980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1776 | CG11474-RC | 139..973 | 12..846 | 4160 | 99.9 | Plus |
CG11474-RA | 1520 | CG11474-RA | 64..898 | 12..846 | 4160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22072095..22072633 | 846..308 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 22072961..22073067 | 212..106 | 535 | 100 | Minus |
2R | 25286936 | 2R | 22072798..22072895 | 308..211 | 490 | 100 | Minus |
2R | 25286936 | 2R | 22073211..22073305 | 106..12 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:55:45 has no hits.
BO04286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:58 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:11 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:32 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 58..898 | 3..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:27 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 58..898 | 3..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:27 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22072798..22072894 | 212..308 | 100 | <- | Minus |
2R | 22072962..22073067 | 106..211 | 100 | <- | Minus |
2R | 22073212..22073311 | 3..105 | 95 | | Minus |
2R | 22072095..22072632 | 309..846 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:32 Download gff for
BO04286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17959600..17960137 | 309..846 | 100 | <- | Minus |
arm_2R | 17960303..17960399 | 212..308 | 100 | <- | Minus |
arm_2R | 17960467..17960572 | 106..211 | 100 | <- | Minus |
arm_2R | 17960717..17960816 | 3..105 | 95 | | Minus |
BO04286.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629721
> BO04286.complete
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCCCAAG
GCCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCACTGGGC
ACTTCAATTTCTGGCCGACCATCCGGATCCTGTGCTGAGTGAGGTCGGAA
AAAAATGGCAGCGTTTGACGACCGAGGGCAAGTTCGAGCTTTCGCCACTG
GAACACTTTTGGACGAGTCCCTACGAGTTCTATCGCATGCCAGAGGTAAA
TCCCTCACTCTACGACCGCCTGAAGGAGGCGCAACTGGTTATCTTCAAGG
GTGACCTCAACTATCGCAAGTTGTTAGGCGACTTCTCCTGGGACAGCACG
GAGTCCTTCGAAACTTGCTTGAGGGGCTTTCGTCCTTCCAATCTCTGCAC
TCTGCGCACAATTAAAGCGGATCTGATCTGCGGATTGGGTGCAGGCGTGG
CGGACCAACTGTTTGCCAAGGATAAGGAGTGGATGTTGACTGGCGAGTAT
GGCGTAATACAGTTTGCCAGCAAGGCAAGCTTTCTAGACCAT
BO04286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1311 | CG11474-PC | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG11474-RA | 1311 | CG11474-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1776 | CG11474-RC | 139..1451 | 12..1324 | 6550 | 99.9 | Plus |
CG11474-RA | 1520 | CG11474-RA | 64..1376 | 12..1324 | 6550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22071765..22072633 | 1176..308 | 4345 | 100 | Minus |
2R | 25286936 | 2R | 22071559..22071708 | 1324..1175 | 750 | 100 | Minus |
2R | 25286936 | 2R | 22072961..22073067 | 212..106 | 535 | 100 | Minus |
2R | 25286936 | 2R | 22072798..22072895 | 308..211 | 490 | 100 | Minus |
2R | 25286936 | 2R | 22073211..22073305 | 106..12 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:14 has no hits.
BO04286.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:32 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 1..1311 | 17..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:15 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 133..1451 | 3..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:38 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 69..1376 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:32 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 133..1451 | 3..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:12 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 69..1376 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:12 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22071766..22072632 | 309..1175 | 100 | <- | Minus |
2R | 22072798..22072894 | 212..308 | 100 | <- | Minus |
2R | 22072962..22073067 | 106..211 | 100 | <- | Minus |
2R | 22073212..22073300 | 17..105 | 100 | | Minus |
2R | 22071557..22071707 | 1176..1326 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:38 Download gff for
BO04286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17960717..17960805 | 17..105 | 100 | | Minus |
arm_2R | 17959062..17959212 | 1176..1326 | 98 | <- | Minus |
arm_2R | 17959271..17960137 | 309..1175 | 100 | <- | Minus |
arm_2R | 17960303..17960399 | 212..308 | 100 | <- | Minus |
arm_2R | 17960467..17960572 | 106..211 | 100 | <- | Minus |
BO04286.pep Sequence
Translation from 16 to 1342
> BO04286.pep
MGSETDFDAKNGIVDGPTPPHTELAALYKQSFAYYTFRVRLPSTLATIAD
SLVKDKDVLLATYGAAAEADIEQTTKEVRQLRDDILSNGPLLPFGENDSD
SEVWNAFLEKLPKEKRTYFSVCWLYAECYMYRKISSIFRATAHLAAYDYF
SQQKQTATKLSVDAMLAVAKATRHNERNSDTFRQLIKLNLWGNRCDLSIT
SGKQVKPTGNAFDQVTDLEEKLLIDGTAEVWKALDGASGEGIVDIIFDNA
GYELYTDLILAEYIIDKGLAAKVRFNPKAIPWFISDVMEHDFHWALQFLA
DHPDPVLSEVGKKWQRLTTEGKFELSPLEHFWTSPYEFYRMPEVNPSLYD
RLKEAQLVIFKGDLNYRKLLGDFSWDSTESFETCLRGFRPSNLCTLRTIK
ADLICGLGAGVADQLFAKDKEWMLTGEYGVIQFASKASFLDH
BO04286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-PC | 436 | CG11474-PC | 1..436 | 1..436 | 2297 | 100 | Plus |
CG11474-PA | 436 | CG11474-PA | 1..436 | 1..436 | 2297 | 100 | Plus |
CG4161-PB | 484 | CG4161-PB | 7..444 | 3..433 | 997 | 43.2 | Plus |
CG4161-PA | 484 | CG4161-PA | 7..444 | 3..433 | 997 | 43.2 | Plus |
CG2921-PA | 478 | CG2921-PA | 34..473 | 5..437 | 991 | 41.8 | Plus |