Clone BO04286 Report

Search the DGRC for BO04286

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG11474-RA
Protein status:BO04286.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO04286.3prime Sequence

897 bp (875 high quality bases) assembled on 2005-12-01

> BO04286.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGCAAACTGTATTACGCCATACTCGC
CAGTCAACATCCACTCCTTATCCTTGGCAAACAGTTGGTCCGCCACGCCT
GCACCCAATCCGCAGATCAGATCCGCTTTAATTGTGCGCAGAGTGCAGAG
ATTGGAAGGACGAAAGCCCCTCAAGCAAGTTTCGAAGGACTCCGTGCTGT
CCCAGGAGAAGTCGCCTAACAACTTGCGATAGTTGAGGTCACCCTTGAAG
ATAACCAGTTGCGCCTCCTTCAGGCGGTCGTAGAGTGAGGGATTTACCTC
TGGCATGCGATAGAACTCGTAGGGACTCGTCCAAAAGTGTTCCAGTGGCG
AAAGCTCGAACTTGCCCTCGGTCGTCAAACGCTGCCATTTTTTTCCGACC
TCACTCAGCACAGGATCCGGATGGTCGGCCAGAAATTGAAGTGCCCAGTG
GAAGTCGTGCTCCATCACGTCCGAAATGAACCAAGGAATGGCCTTGGGAT
TGAAGCGCACCTTGGCAGCCAATCCCTTGTCGATAATGTACTCAGCCAGA
ATGAGATCCGTGTACAGCTCATAGCCGGCGTTGTCGAAAATGATGTCCAC
AATGCCCTCTCCGGAGGCTCCGTCCAGGGCTTTCCATACCTCCGCGGTGC
CGTCGATTAGTAGCTTCTCCTCCAAATCCGTAACTTGGTCAAAGGCATTG
CCAGTGGGCTTCACCTGTTTGCCGGAGGTTATGGACAGATCGCATCGGTT
GCCCCACAAATTGAGTTTGATCAACTGGCGGAAGGTGTCCGAGTTTCGTT
CATTGTGCCGCGTAGCCTTGGCCACCGCCAGCATGGCGTCCACGCTCAGT
TTGGTCGCCGTCTGTTTCTGCTGGCTGAAGTAGTCGTAGGCGGCCAG

BO04286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PB 1308 CG11474-RB 427..1305 897..19 4395 100 Minus
CG11474-PA 1311 CG11474-RA 430..1308 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1776 CG11474-RC 573..1451 897..19 4395 100 Minus
CG11474-RA 1520 CG11474-RA 498..1376 897..19 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22071765..22072495 167..897 3655 100 Plus
2R 25286936 2R 22071559..22071708 19..168 750 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:20:14 has no hits.

BO04286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:57 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 430..1311 18..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:09 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 430..1311 18..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:10 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 498..1376 19..897 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:11 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 498..1376 19..897 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:11 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22071559..22071707 19..167 100 <- Plus
2R 22071766..22072495 168..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:10 Download gff for BO04286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17959064..17959212 19..167 100 <- Plus
arm_2R 17959271..17960000 168..897 100   Plus

BO04286.5prime Sequence

846 bp (809 high quality bases) assembled on 2005-11-29

> BO04286.5prime
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCC

BO04286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PA 1311 CG11474-RA 1..830 17..846 4150 100 Plus
CG11474-PB 1308 CG11474-RB 203..827 222..846 3125 100 Plus
CG11474-PB 1308 CG11474-RB 1..196 17..212 980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1776 CG11474-RC 139..973 12..846 4160 99.9 Plus
CG11474-RA 1520 CG11474-RA 64..898 12..846 4160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22072095..22072633 846..308 2695 100 Minus
2R 25286936 2R 22072961..22073067 212..106 535 100 Minus
2R 25286936 2R 22072798..22072895 308..211 490 100 Minus
2R 25286936 2R 22073211..22073305 106..12 460 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 23:55:45 has no hits.

BO04286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:58 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:11 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:32 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 58..898 3..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:27 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 58..898 3..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:27 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22072798..22072894 212..308 100 <- Minus
2R 22072962..22073067 106..211 100 <- Minus
2R 22073212..22073311 3..105 95   Minus
2R 22072095..22072632 309..846 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:32 Download gff for BO04286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17959600..17960137 309..846 100 <- Minus
arm_2R 17960303..17960399 212..308 100 <- Minus
arm_2R 17960467..17960572 106..211 100 <- Minus
arm_2R 17960717..17960816 3..105 95   Minus

BO04286.complete Sequence

1342 bp (1342 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629721

> BO04286.complete
GAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATG
GAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTAT
AAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTT
GGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCA
CATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTT
AGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGG
TGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGC
CCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGT
TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGC
CGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCG
TGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAAC
TCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATG
CGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCT
TTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCG
GAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACAT
CATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATTCTGGCTG
AGTACATTATCGACAAGGGATTGGCTGCCAAGGTGCGCTTCAATCCCAAG
GCCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCACTGGGC
ACTTCAATTTCTGGCCGACCATCCGGATCCTGTGCTGAGTGAGGTCGGAA
AAAAATGGCAGCGTTTGACGACCGAGGGCAAGTTCGAGCTTTCGCCACTG
GAACACTTTTGGACGAGTCCCTACGAGTTCTATCGCATGCCAGAGGTAAA
TCCCTCACTCTACGACCGCCTGAAGGAGGCGCAACTGGTTATCTTCAAGG
GTGACCTCAACTATCGCAAGTTGTTAGGCGACTTCTCCTGGGACAGCACG
GAGTCCTTCGAAACTTGCTTGAGGGGCTTTCGTCCTTCCAATCTCTGCAC
TCTGCGCACAATTAAAGCGGATCTGATCTGCGGATTGGGTGCAGGCGTGG
CGGACCAACTGTTTGCCAAGGATAAGGAGTGGATGTTGACTGGCGAGTAT
GGCGTAATACAGTTTGCCAGCAAGGCAAGCTTTCTAGACCAT

BO04286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1311 CG11474-PC 1..1308 17..1324 6540 100 Plus
CG11474-RA 1311 CG11474-PA 1..1308 17..1324 6540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1776 CG11474-RC 139..1451 12..1324 6550 99.9 Plus
CG11474-RA 1520 CG11474-RA 64..1376 12..1324 6550 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22071765..22072633 1176..308 4345 100 Minus
2R 25286936 2R 22071559..22071708 1324..1175 750 100 Minus
2R 25286936 2R 22072961..22073067 212..106 535 100 Minus
2R 25286936 2R 22072798..22072895 308..211 490 100 Minus
2R 25286936 2R 22073211..22073305 106..12 460 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 08:20:14 has no hits.

BO04286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:32 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 1..1311 17..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:15 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 133..1451 3..1324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:38 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 69..1376 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:32 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 133..1451 3..1324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:12 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 69..1376 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:12 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22071766..22072632 309..1175 100 <- Minus
2R 22072798..22072894 212..308 100 <- Minus
2R 22072962..22073067 106..211 100 <- Minus
2R 22073212..22073300 17..105 100   Minus
2R 22071557..22071707 1176..1326 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:38 Download gff for BO04286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17960717..17960805 17..105 100   Minus
arm_2R 17959062..17959212 1176..1326 98 <- Minus
arm_2R 17959271..17960137 309..1175 100 <- Minus
arm_2R 17960303..17960399 212..308 100 <- Minus
arm_2R 17960467..17960572 106..211 100 <- Minus

BO04286.pep Sequence

Translation from 16 to 1342

> BO04286.pep
MGSETDFDAKNGIVDGPTPPHTELAALYKQSFAYYTFRVRLPSTLATIAD
SLVKDKDVLLATYGAAAEADIEQTTKEVRQLRDDILSNGPLLPFGENDSD
SEVWNAFLEKLPKEKRTYFSVCWLYAECYMYRKISSIFRATAHLAAYDYF
SQQKQTATKLSVDAMLAVAKATRHNERNSDTFRQLIKLNLWGNRCDLSIT
SGKQVKPTGNAFDQVTDLEEKLLIDGTAEVWKALDGASGEGIVDIIFDNA
GYELYTDLILAEYIIDKGLAAKVRFNPKAIPWFISDVMEHDFHWALQFLA
DHPDPVLSEVGKKWQRLTTEGKFELSPLEHFWTSPYEFYRMPEVNPSLYD
RLKEAQLVIFKGDLNYRKLLGDFSWDSTESFETCLRGFRPSNLCTLRTIK
ADLICGLGAGVADQLFAKDKEWMLTGEYGVIQFASKASFLDH

BO04286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PC 436 CG11474-PC 1..436 1..436 2297 100 Plus
CG11474-PA 436 CG11474-PA 1..436 1..436 2297 100 Plus
CG4161-PB 484 CG4161-PB 7..444 3..433 997 43.2 Plus
CG4161-PA 484 CG4161-PA 7..444 3..433 997 43.2 Plus
CG2921-PA 478 CG2921-PA 34..473 5..437 991 41.8 Plus