Clone BO04287 Report

Search the DGRC for BO04287

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptstmA-RA
Protein status:BO04287.pep: Imported from assembly
Sequenced Size:2416

Clone Sequence Records

BO04287.3prime Sequence

937 bp (775 high quality bases) assembled on 2005-12-01

> BO04287.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGAAGAGTTCCGGAAAGTTCGTCTCGT
AGATGGGCTTCTCATTGCTGGCTTGCAACTGACTGGACTTGGTGTCGCTT
TGCGTGATCTGACGCTCCACGGCTAGCGAGTTGAAAAGCTCGTTAAGGCG
GTTCTGGATGAGATCGTGCTTAGGTTCTGTGCGTCTCATAAGGTCGTCAA
ACTCGCCCTCGCGGAAGGTGCGCACTATCTGCATCTGGCGCTCGCGTTGC
TCCCGCTTAGCGGCCTCAGTTGGCTCCGCCAGTGCTCGCTTCATGGCATC
GAAGTTGAACTCCGGCGCAAGGAGCTTTTTGCACACTCCCGGCGAGCTGC
TAACGCTGTCCACATCGCCGTTGTACACCGTCAGATCCGCTGAGCTGTTG
CGCTGCGTCAGCTGGTTGCTTACCGACTCCACCCAAGAGTGGCGGTGACC
TGGGTGATCGGTCTGGTTAAGCGAGTACGGAGCACCGGTGTTGAGGCGTT
GGGCGTCCATGCCCGCGTTCTGCAAGCACTCGCCCAGCGCCAACTTATCT
ATGGCCAAGTGCGGCAGCTGTAGATTGAATGTCTTTCCGGCTAGCTTCTT
GGGCTCGAGCAGTGGGGGAAGGAAATGGCTGGCCTCCTCGCGCCGTGCGT
CCACTATCTTTTGAGCATACTCCAGAAGGTTGTTGATGCCACTAACACGC
GAGATTAGCACCAGCAGGCCAATTGAGATGGCGTGCAGACTACATTTGTG
CACGTTTCCCAGAGTGTCCACGGTGCAGGCTACCTGCTGGATTCCGAGGA
TAAACAGAAGAAACTCTTGCACGGTCTCGTTGCANGACATTTCCACGATG
AGTAGAGCAGCGGTATTAAAACTGGAGGTCAGGGCGTCAACCCGATCCGA
CAATGCCATGGAGTCGATCAACGCCTGCATGATGTTG

BO04287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8739-PA 2385 cmp44E-RA 1464..2382 937..19 4576 99.8 Minus
CG8739-PB 2463 cmp44E-RB 1542..2460 937..19 4576 99.8 Minus
CG8739-PC 2505 cmp44E-RC 1584..2502 937..19 4576 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RD 2780 CG8739-RD 1634..2552 937..19 4584 99.9 Minus
stmA-RC 3158 CG8739-RC 2012..2930 937..19 4584 99.9 Minus
stmA-RB 3116 CG8739-RB 1970..2888 937..19 4584 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8730064..8730689 169..794 3130 100 Plus
2R 25286936 2R 8729730..8729881 19..170 760 100 Plus
2R 25286936 2R 8730749..8730892 794..937 709 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 01:04:14 has no hits.

BO04287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:58:59 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1464..2385 15..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:12 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PC 1584..2505 15..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:39 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RB 1970..2891 15..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:02 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RB 1970..2891 15..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:02 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8729726..8729879 15..168 98 <- Plus
2R 8730064..8730688 169..793 100 <- Plus
2R 8730749..8730892 794..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:39 Download gff for BO04287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4617231..4617384 15..168 98 <- Plus
arm_2R 4617569..4618193 169..793 100 <- Plus
arm_2R 4618254..4618397 794..937 99   Plus

BO04287.5prime Sequence

839 bp (834 high quality bases) assembled on 2005-12-01

> BO04287.5prime
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGC

BO04287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8739-PA 2385 cmp44E-RA 1..823 17..839 4115 100 Plus
CG8739-PB 2463 cmp44E-RB 86..901 24..839 4080 100 Plus
CG8739-PC 2505 cmp44E-RC 86..691 24..629 3030 100 Plus
CG8739-PC 2505 cmp44E-RC 732..943 628..839 1060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2738 CG8739-RA 129..951 17..839 4115 100 Plus
stmA-RB 3116 CG8739-RB 514..1329 24..839 4080 100 Plus
stmA-RD 2780 CG8739-RD 129..741 17..629 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8732160..8732406 628..382 1235 100 Minus
2R 25286936 2R 8732676..8732881 228..23 1030 100 Minus
2R 25286936 2R 8732465..8732618 382..229 770 100 Minus
2R 25286936 2R 8731681..8731813 759..627 665 100 Minus
2R 25286936 2R 8731533..8731612 839..760 400 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:04:22 has no hits.

BO04287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:00 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:14 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8739-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:40 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..951 17..839 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:29 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..951 17..839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:29 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8731533..8731612 760..839 100 <- Minus
2R 8731681..8731811 629..759 100 <- Minus
2R 8732160..8732405 383..628 100 <- Minus
2R 8732465..8732618 229..382 100 <- Minus
2R 8732676..8732881 23..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:40 Download gff for BO04287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4619038..4619117 760..839 100 <- Minus
arm_2R 4619186..4619316 629..759 100 <- Minus
arm_2R 4619665..4619910 383..628 100 <- Minus
arm_2R 4619970..4620123 229..382 100 <- Minus
arm_2R 4620181..4620386 23..228 100   Minus

BO04287.complete Sequence

2416 bp assembled on 2008-08-27

GenBank Submission: FJ638623

> BO04287.complete
GAAGTTATCAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCA
GGCCGCGCTACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAG
GACGGGCTGGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAG
CTCGCCGGACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCA
CCAAGGATATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAG
GCCATGGACCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTT
GTTTGTTGAGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGA
ACCCCAACCTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAAC
ATCAACGAGGACACACCATCTTACCATCGACGATACGACTTCTTCATCTC
GAAGTTCTCTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTC
TGCGTCTGGCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTG
TCCGACGATCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGAT
TGTGCCCTCGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAG
AGGACGCCACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGT
GAGCTGGTGGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCC
GCTGCTGACCCACTTGGACCGACACGAGTTGTGGGTTCCCAACACATTTG
CCATTCACACATTCCGCATCGTGATGATCTCCATACAGCCACAGTACTCG
TATACCGTTGTGGAGACGCTGATGCAGCATCTGGACAACAACTTCAAGTC
CTCGCCGAAAACGCGCACTTCGCTCGCTGTCGTTCTGTCGAAAATTATAG
CTATTGCAGCGGGAGAAAGTGTCGGTCCCTCGGCCCTGGACATCATCAAC
AACCTGCTGACCCACCTGCGGACGAGTGTGAGCACTACCAGCGAGATAAC
ACCAGAGGAGTCACAATATCAGGAGGCGCTGATCAACGCACTAGGCGAAT
TTGCCAACCATCATCCCGACTATCAAAAGATCGAGATCATGCTGTTCATC
ATGAACACCGTGCCAGACCTGTCCAAGAAGAGCAAGGGAGATCAAATGCT
GCAGAACATTCTGCTTAAATCACTGCTCAAGGTTGGCACTCAGTACAGCA
CCGTCTCCTTCGAAAAGGCATTCCCCGCCTCCTTCCTGCAGCCGCTGCTC
AAGATGGCACGCGCTCCACACAATCCCACGCGCATGGTTGTGATGCAAAT
ATTGCAGGCCCTTCTAGATCGTCATCAGAACGAGCAGGTGCTCAGTAGCG
TGAGTGTGAAGCCATACCCGGCTCTCTCCCAAGAGCCGCCGTCGCGCTCC
GACATAATTTTCACGCACAAATACGGCGCCAACATCATGCAGGCGTTGAT
CGACTCCATGGCATTGTCGGATCGGGTTGACGCCCTGACCTCCAGTTTTA
ATACCGCTGCTCTACTCATCGTGGAAATGTCCTGCAACGAGACCGTGCAA
GAGTTTCTTCTGTTTATCCTCGGAATCCAGCAGGTAGCCTGCACCGTGGA
CACTCTGGGAAACGTGCACAAATGTAGTCTGCACGCCATCTCAATTGGCC
TGCTGGTGCTAATCTCGCGTGTTAGTGGCATCAACAACCTTCTGGAGTAT
GCTCAAAAGATAGTGGACGCACGGCGCGAGGAGGCCAGCCATTTCCTTCC
CCCACTGCTCGAGCCCAAGAAGCTAGCCGGAAAGACATTCAATCTACAGC
TGCCGCACTTGGCCATAGATAAGTTGGCGCTGGGCGAGTGCTTGCAGAAC
GCGGGCATGGACGCCCAACGCCTCAACACCGGTGCTCCGTACTCGCTTAA
CCAGACCGATCACCCAGGTCACCGCCACTCTTGGGTGGAGTCGGTAAGCA
ACCAGCTGACGCAGCGCAACAGCTCAGCGGATCTGACGGTGTACAACGGC
GATGTGGACAGCGTTAGCAGCTCGCCGGGAGTGTGCAAAAAGCTCCTTGC
GCCGGAGTTCAACTTCGATGCCATGAAGCGAGCACTGGCGGAGCCAACTG
AGGCCGCTAAGCGGGAGCAACGCGAGCGCCAGATGCAGATAGTGCGCACC
TTCCGCGAGGGCGAGTTTGACGACCTTATGAGACGCACAGAACCTAAGCA
CGATCTCATCCAGAACCGCCTTAACGAGCTTTTCAACTCGCTAGCCGTGG
AGCGTCAGATCACGCAAAGCGACACCAAGTCCAGTCAGTTGCAAGCCAGC
AATGAGAAGCCCATCTACGAGACGAACTTTCCGGAACTCTTCTACTACGC
AAGCTTTCTAGACCAT

BO04287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2385 CG8739-PA 1..2382 17..2398 11910 100 Plus
stmA-RB 2463 CG8739-PB 86..2460 24..2398 11875 100 Plus
stmA-RD 2427 CG8739-PD 654..2424 628..2398 8855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-RA 2738 CG8739-RA 129..2510 17..2398 11910 100 Plus
stmA-RB 3116 CG8739-RB 514..2888 24..2398 11875 100 Plus
stmA-RD 2780 CG8739-RD 782..2552 628..2398 8855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8730749..8731612 1623..760 4320 100 Minus
2R 25286936 2R 8730064..8730689 2248..1623 3130 100 Minus
2R 25286936 2R 8732160..8732406 628..382 1235 100 Minus
2R 25286936 2R 8732676..8732881 228..23 1030 100 Minus
2R 25286936 2R 8732465..8732618 382..229 770 100 Minus
2R 25286936 2R 8729730..8729881 2398..2247 760 100 Minus
2R 25286936 2R 8731681..8731813 759..627 665 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:34:30 has no hits.

BO04287.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:30 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 184..2568 17..2402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:57 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..2510 17..2400 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:56 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 184..2565 17..2400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:53 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
stmA-RA 129..2510 17..2400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:53 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8729728..8729879 2249..2400 98 <- Minus
2R 8730064..8730688 1624..2248 100 <- Minus
2R 8730749..8731612 760..1623 100 <- Minus
2R 8731681..8731811 629..759 100 <- Minus
2R 8732160..8732405 383..628 100 <- Minus
2R 8732465..8732618 229..382 100 <- Minus
2R 8732676..8732885 17..228 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:57 Download gff for BO04287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4617233..4617384 2249..2400 98 <- Minus
arm_2R 4617569..4618193 1624..2248 100 <- Minus
arm_2R 4618254..4619117 760..1623 100 <- Minus
arm_2R 4619186..4619316 629..759 100 <- Minus
arm_2R 4619665..4619910 383..628 100 <- Minus
arm_2R 4619970..4620123 229..382 100 <- Minus
arm_2R 4620181..4620390 17..228 98   Minus

BO04287.pep Sequence

Translation from 16 to 2416

> BO04287.pep
MPGCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKL
DRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESF
LRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSM
CHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLL
FNMQSGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHL
DRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTR
TSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQ
YQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILL
KSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALL
DRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMAL
SDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNV
HKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEP
KKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHP
GHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNF
DAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQN
RLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYYASFLDH

BO04287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
stmA-PA 794 CG8739-PA 1..794 1..794 4045 100 Plus
stmA-PB 820 CG8739-PB 30..820 4..794 4027 100 Plus
stmA-PD 808 CG8739-PD 1..808 1..794 4020 98.3 Plus
stmA-PC 834 CG8739-PC 30..834 4..794 4002 98.3 Plus