Clone BO04294 Report

Search the DGRC for BO04294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptWwox-RA
Protein status:BO04294.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO04294.3prime Sequence

894 bp (796 high quality bases) assembled on 2005-12-01

> BO04294.3prime
ATGGTCTAGAAAGCTTGCATGCTGCTCCTGCTCCACAAGCTCGGCAATCA
GGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGAC
AACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACAA
TCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCTT
GTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTAG
AACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCAG
GCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGGG
CGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCAG
TATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGGG
CAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTTT
TGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAGG
TGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGGG
CAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACAC
TCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAAG
TCGAGAGCGGCGAATCGACAGCGGGAACGTGCTGCAGGTCGCTCCTGGGC
AATCCTTTCGATGGCCGCCTCTGCGGAGGATCTGTTCCGGCAGGCGAAGA
TGATCTCACAGCCGTGATGGGCGAGCGAACGAGCCGTCTCGTAGCCAATG
CCACAATTTGCGCCCGTTATCAGCGCGGTGCGTCCATGCAAATC

BO04294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 352..1227 894..19 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 450..1325 894..19 4380 100 Minus
Wwox-RA 1502 CG7221-RA 450..1325 894..19 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8003775 644..894 1255 100 Plus
2L 23513712 2L 7999847..8000033 19..205 935 100 Plus
2L 23513712 2L 8003284..8003465 464..645 910 100 Plus
2L 23513712 2L 8000304..8000436 334..466 665 100 Plus
2L 23513712 2L 8000108..8000239 205..336 660 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:04:28 has no hits.

BO04294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:12 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 352..1230 18..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:31 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 352..1230 18..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:41 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 450..1329 13..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:53 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 450..1329 13..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:53 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7999843..8000032 13..204 98 <- Plus
2L 8000108..8000236 205..333 100 <- Plus
2L 8000304..8000433 334..463 100 <- Plus
2L 8003284..8003463 464..643 100 <- Plus
2L 8003525..8003775 644..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:41 Download gff for BO04294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8003284..8003463 464..643 100 <- Plus
arm_2L 7999843..8000032 13..204 98 <- Plus
arm_2L 8000108..8000236 205..333 100 <- Plus
arm_2L 8000304..8000433 334..463 100 <- Plus
arm_2L 8003525..8003775 644..894 100   Plus

BO04294.5prime Sequence

893 bp (815 high quality bases) assembled on 2005-11-29

> BO04294.5prime
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACATTGCCAAGC

BO04294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 1..877 17..893 4360 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 94..975 12..893 4380 99.8 Plus
Wwox-RA 1502 CG7221-RA 94..975 12..893 4380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8004034 618..109 2550 100 Minus
2L 23513712 2L 8003284..8003465 798..617 910 100 Minus
2L 23513712 2L 8000339..8000436 893..796 475 99 Minus
2L 23513712 2L 8004097..8004193 108..12 470 99 Minus
Blast to na_te.dros performed on 2015-02-11 02:24:31 has no hits.

BO04294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:13 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:33 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:05 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 94..975 12..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:17 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 94..975 12..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:17 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8000339..8000433 799..893 98 <- Minus
2L 8003284..8003463 619..798 100 <- Minus
2L 8003525..8004034 109..618 100 <- Minus
2L 8004097..8004193 12..108 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:05 Download gff for BO04294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8000339..8000433 799..893 98 <- Minus
arm_2L 8003284..8003463 619..798 100 <- Minus
arm_2L 8003525..8004034 109..618 100 <- Minus
arm_2L 8004097..8004193 12..108 98   Minus

BO04294.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629722

> BO04294.complete
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGTTCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGAGGCATTT
CTGTTTTTAGCCTGCATCCGGGCAATATGGTGTCCAGCGATTTGTCACGA
AACTATTGGTTCTACCGCCTGCTCTTTGCCATTGTGCGTCCCTTCACCAA
GTCGCTGCAACAAGCGGCTGCCACGAGTATCTACTGTGCGACGGCCAACG
AGCTGACCGGATTGTCTGGACTGTACTTCAACAATTGCTTCTTCTGCGAG
CCCAGCAAGTTGTCCAAAAGTGCTGCACTGCAGCAGCAACTGTGGAAGCT
GAGCGAGAACCTGATTGCCGAGCTTGTGGAGCAGGAGCAGCATGCAAGCT
TTCTAGACCAT

BO04294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1230 CG7221-PB 1..1227 17..1243 6135 100 Plus
Wwox-RA 1230 CG7221-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 94..1325 12..1243 6145 99.9 Plus
Wwox-RA 1502 CG7221-RA 94..1325 12..1243 6145 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8004034 618..109 2550 100 Minus
2L 23513712 2L 7999847..8000033 1243..1057 935 100 Minus
2L 23513712 2L 8003284..8003465 798..617 910 100 Minus
2L 23513712 2L 8000304..8000436 928..796 665 100 Minus
2L 23513712 2L 8000108..8000239 1057..926 660 100 Minus
2L 23513712 2L 8004097..8004193 108..12 470 99 Minus
Blast to na_te.dros performed on 2014-11-27 16:02:42 has no hits.

BO04294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:34 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 1..1230 17..1244 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:19 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 75..1310 12..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:19 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 99..1325 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:35 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 75..1310 12..1249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:03 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 99..1325 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:03 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8004097..8004188 17..108 100   Minus
2L 8000304..8000433 799..928 100 <- Minus
2L 8003284..8003463 619..798 100 <- Minus
2L 8003525..8004034 109..618 100 <- Minus
2L 7999843..8000032 1058..1245 98 <- Minus
2L 8000108..8000236 929..1057 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:19 Download gff for BO04294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7999843..8000032 1058..1245 98 <- Minus
arm_2L 8000108..8000236 929..1057 100 <- Minus
arm_2L 8000304..8000433 799..928 100 <- Minus
arm_2L 8003284..8003463 619..798 100 <- Minus
arm_2L 8003525..8004034 109..618 100 <- Minus
arm_2L 8004097..8004188 17..108 100   Minus

BO04294.pep Sequence

Translation from 16 to 1261

> BO04294.pep
MIALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRI
TGELPLGWEKYYDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQV
RQRFDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIF
ACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSV
SHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLFDYKT
RIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVLFAQ
ELAQRWKQRGISVFSLHPGNMVSSDLSRNYWFYRLLFAIVRPFTKSLQQA
AATSIYCATANELTGLSGLYFNNCFFCEPSKLSKSAALQQQLWKLSENLI
AELVEQEQHASFLDH

BO04294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-PB 409 CG7221-PB 1..409 1..409 2146 100 Plus
Wwox-PA 409 CG7221-PA 1..409 1..409 2146 100 Plus
CG2064-PA 330 CG2064-PA 40..318 118..397 391 37.1 Plus
CG2070-PB 325 CG2070-PB 43..318 121..397 377 36.4 Plus
CG2070-PA 325 CG2070-PA 43..318 121..397 377 36.4 Plus