Clone Sequence Records
BO04294.3prime Sequence
894 bp (796 high quality bases) assembled on 2005-12-01
> BO04294.3prime
ATGGTCTAGAAAGCTTGCATGCTGCTCCTGCTCCACAAGCTCGGCAATCA
GGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGAC
AACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACAA
TCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCTT
GTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTAG
AACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCAG
GCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGGG
CGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCAG
TATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGGG
CAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTTT
TGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAGG
TGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGGG
CAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACAC
TCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAAG
TCGAGAGCGGCGAATCGACAGCGGGAACGTGCTGCAGGTCGCTCCTGGGC
AATCCTTTCGATGGCCGCCTCTGCGGAGGATCTGTTCCGGCAGGCGAAGA
TGATCTCACAGCCGTGATGGGCGAGCGAACGAGCCGTCTCGTAGCCAATG
CCACAATTTGCGCCCGTTATCAGCGCGGTGCGTCCATGCAAATC
BO04294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 352..1227 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 450..1325 | 894..19 | 4380 | 100 | Minus |
Wwox-RA | 1502 | CG7221-RA | 450..1325 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8003775 | 644..894 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 7999847..8000033 | 19..205 | 935 | 100 | Plus |
2L | 23513712 | 2L | 8003284..8003465 | 464..645 | 910 | 100 | Plus |
2L | 23513712 | 2L | 8000304..8000436 | 334..466 | 665 | 100 | Plus |
2L | 23513712 | 2L | 8000108..8000239 | 205..336 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:04:28 has no hits.
BO04294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:12 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 352..1230 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:31 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 352..1230 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:41 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 450..1329 | 13..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:53 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 450..1329 | 13..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:53 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7999843..8000032 | 13..204 | 98 | <- | Plus |
2L | 8000108..8000236 | 205..333 | 100 | <- | Plus |
2L | 8000304..8000433 | 334..463 | 100 | <- | Plus |
2L | 8003284..8003463 | 464..643 | 100 | <- | Plus |
2L | 8003525..8003775 | 644..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:41 Download gff for
BO04294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8003284..8003463 | 464..643 | 100 | <- | Plus |
arm_2L | 7999843..8000032 | 13..204 | 98 | <- | Plus |
arm_2L | 8000108..8000236 | 205..333 | 100 | <- | Plus |
arm_2L | 8000304..8000433 | 334..463 | 100 | <- | Plus |
arm_2L | 8003525..8003775 | 644..894 | 100 | | Plus |
BO04294.5prime Sequence
893 bp (815 high quality bases) assembled on 2005-11-29
> BO04294.5prime
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACATTGCCAAGC
BO04294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 94..975 | 12..893 | 4380 | 99.8 | Plus |
Wwox-RA | 1502 | CG7221-RA | 94..975 | 12..893 | 4380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8004034 | 618..109 | 2550 | 100 | Minus |
2L | 23513712 | 2L | 8003284..8003465 | 798..617 | 910 | 100 | Minus |
2L | 23513712 | 2L | 8000339..8000436 | 893..796 | 475 | 99 | Minus |
2L | 23513712 | 2L | 8004097..8004193 | 108..12 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:24:31 has no hits.
BO04294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:13 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:33 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:05 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 94..975 | 12..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:17 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 94..975 | 12..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:17 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8000339..8000433 | 799..893 | 98 | <- | Minus |
2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
2L | 8004097..8004193 | 12..108 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:05 Download gff for
BO04294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8000339..8000433 | 799..893 | 98 | <- | Minus |
arm_2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
arm_2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
arm_2L | 8004097..8004193 | 12..108 | 98 | | Minus |
BO04294.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629722
> BO04294.complete
GAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATG
AGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGC
TATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGG
TCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACT
ACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAA
CGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACA
GAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGC
AGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGC
GCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGG
CTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCA
TCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTC
GCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGA
AATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAG
TATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTC
CAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACT
GTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGAT
TTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTCGCCGCCG
CCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAA
TGTCTTGTTCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGAGGCATTT
CTGTTTTTAGCCTGCATCCGGGCAATATGGTGTCCAGCGATTTGTCACGA
AACTATTGGTTCTACCGCCTGCTCTTTGCCATTGTGCGTCCCTTCACCAA
GTCGCTGCAACAAGCGGCTGCCACGAGTATCTACTGTGCGACGGCCAACG
AGCTGACCGGATTGTCTGGACTGTACTTCAACAATTGCTTCTTCTGCGAG
CCCAGCAAGTTGTCCAAAAGTGCTGCACTGCAGCAGCAACTGTGGAAGCT
GAGCGAGAACCTGATTGCCGAGCTTGTGGAGCAGGAGCAGCATGCAAGCT
TTCTAGACCAT
BO04294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1230 | CG7221-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Wwox-RA | 1230 | CG7221-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 94..1325 | 12..1243 | 6145 | 99.9 | Plus |
Wwox-RA | 1502 | CG7221-RA | 94..1325 | 12..1243 | 6145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8004034 | 618..109 | 2550 | 100 | Minus |
2L | 23513712 | 2L | 7999847..8000033 | 1243..1057 | 935 | 100 | Minus |
2L | 23513712 | 2L | 8003284..8003465 | 798..617 | 910 | 100 | Minus |
2L | 23513712 | 2L | 8000304..8000436 | 928..796 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8000108..8000239 | 1057..926 | 660 | 100 | Minus |
2L | 23513712 | 2L | 8004097..8004193 | 108..12 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:02:42 has no hits.
BO04294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:34 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 1..1230 | 17..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:11:19 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 75..1310 | 12..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:19 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 99..1325 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:35 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 75..1310 | 12..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:03 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 99..1325 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:03 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8004097..8004188 | 17..108 | 100 | | Minus |
2L | 8000304..8000433 | 799..928 | 100 | <- | Minus |
2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
2L | 7999843..8000032 | 1058..1245 | 98 | <- | Minus |
2L | 8000108..8000236 | 929..1057 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:19 Download gff for
BO04294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7999843..8000032 | 1058..1245 | 98 | <- | Minus |
arm_2L | 8000108..8000236 | 929..1057 | 100 | <- | Minus |
arm_2L | 8000304..8000433 | 799..928 | 100 | <- | Minus |
arm_2L | 8003284..8003463 | 619..798 | 100 | <- | Minus |
arm_2L | 8003525..8004034 | 109..618 | 100 | <- | Minus |
arm_2L | 8004097..8004188 | 17..108 | 100 | | Minus |
BO04294.pep Sequence
Translation from 16 to 1261
> BO04294.pep
MIALPDTDSEDELPPGWEERATDDGTVCYVNQQGKTSQWTHPRTGRSKRI
TGELPLGWEKYYDEQGKRFMFLNKETQQRTNVDPRLAFAVEEPTQNVAQV
RQRFDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIF
ACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSV
SHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLFDYKT
RIIVLSSESHRFANLPVENLAVHHLSPPPEKYWSMMAYNNAKLCNVLFAQ
ELAQRWKQRGISVFSLHPGNMVSSDLSRNYWFYRLLFAIVRPFTKSLQQA
AATSIYCATANELTGLSGLYFNNCFFCEPSKLSKSAALQQQLWKLSENLI
AELVEQEQHASFLDH
BO04294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-PB | 409 | CG7221-PB | 1..409 | 1..409 | 2146 | 100 | Plus |
Wwox-PA | 409 | CG7221-PA | 1..409 | 1..409 | 2146 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 40..318 | 118..397 | 391 | 37.1 | Plus |
CG2070-PB | 325 | CG2070-PB | 43..318 | 121..397 | 377 | 36.4 | Plus |
CG2070-PA | 325 | CG2070-PA | 43..318 | 121..397 | 377 | 36.4 | Plus |