Clone Sequence Records
BO04295.3prime Sequence
856 bp (762 high quality bases) assembled on 2005-12-01
> BO04295.3prime
ATGGTCTAGAAAGCTTGCAACGGAAATGCGTGAGCCCAGCAAGAAATCGT
CCCTCACCTGTGGCAGATACGAGAGGCTCTTGGTGCTCTCCGCATATCGG
TTGACGGCCCTCAGCTCCTCCATGGTCATGCCGCCCTCGGCCCCTCCTCC
GTTTCCGGCTCCGGAGCCTCCGTTGCCGCCTCCTCCGCTATTCGAGCCAG
TTGCTCCGGCGGAATTGGAGCTGCACGAGCTACTGTGCCGAATGCCTCGA
TTGCAGCGGCTGCACGTTCGCTGCTTGAGCTTGGGAGGCGTCGGATTGCC
AACTGCCGAGCCTGAAGCACCTCCTCCTGATCCGCCCGCTGCTCCCGATC
CCGTGCGCCTCTCCCCTCCGCCATCGAGACTCTTGGTGCCAGTGCGCAAT
CGCCTCTGATGATGGCTGCTGCTCGGCGGCGCCGGCTTCTTTTTGTTCTG
TCGATACCGGCGCTTAATAAACGTCATCTCATCCTCATCATCGTCGTCGT
CCTCGTCGTAGTCCCGCTGGTGCTGAGGCGGCACCTGCTGCTGCTGCTGC
TGTTGTTGGTAGTGGTGTGGCTGCTGCTGGGCTCGCTGCTTGTGGCGATA
GATGCCACGACTTCCCTGCGGCGGAGCTATGCTACTGATCTCCAATTCGG
CACCAAAGTCGTGAACGCCGTCCAGCTCATCGTTGTCCTCATCATCGTCG
GCATAGTCATCATAGTCGTAGTCCGTGGCATTTCCGTTGCCATTGCCATT
CCGCTTCGCCGGCAACGGCGACGAAGTCATGGCATAGATGCCAGGTCCCT
CCAGCGAAACTGAGAGACGGGCGCAGCTCTCGATGAACGAGTGTTTCGGG
GAAACG
BO04295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32149-PA | 1821 | RhoGAP71E-RA | 981..1818 | 856..19 | 4140 | 99.7 | Minus |
CG32149-PC | 2691 | RhoGAP71E-RC | 981..1781 | 856..56 | 3955 | 99.7 | Minus |
CG32149-PB | 1815 | RhoGAP71E-RB | 981..1780 | 856..57 | 3950 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP71E-RA | 3071 | CG32149-RA | 1669..2506 | 856..19 | 4160 | 99.8 | Minus |
RhoGAP71E-RD | 5854 | CG32149-RD | 1669..2469 | 856..56 | 3975 | 99.8 | Minus |
RhoGAP71E-RC | 5379 | CG32149-RC | 1669..2469 | 856..56 | 3975 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15601717..15602554 | 856..19 | 4160 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:13:17 has no hits.
BO04295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:14 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32149-PA | 981..1821 | 16..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:34 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32149-PA | 981..1821 | 16..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:22 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 1669..2515 | 11..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:39 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 1669..2515 | 11..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:39 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15601717..15602563 | 11..856 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:22 Download gff for
BO04295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15594817..15595663 | 11..856 | 99 | | Minus |
BO04295.5prime Sequence
865 bp (673 high quality bases) assembled on 2005-12-01
> BO04295.5prime
GAAGTTATCAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCG
CCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCT
CCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGA
GGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGA
TCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCA
CCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGG
TCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGC
TCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCGGC
GAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAAC
GGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATC
TATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCC
CACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCC
CAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGG
ATGTGCTCAAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTGAT
AAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGC
CCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCT
TTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACGCA
TTGCAACATTCTTTG
BO04295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32149-PB | 1815 | RhoGAP71E-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
CG32149-PA | 1821 | RhoGAP71E-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG32149-PC | 2691 | RhoGAP71E-RC | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP71E-RG | 4053 | CG32149-RG | 688..1537 | 16..865 | 4250 | 100 | Plus |
RhoGAP71E-RF | 4498 | CG32149-RF | 688..1537 | 16..865 | 4250 | 100 | Plus |
RhoGAP71E-RE | 4934 | CG32149-RE | 688..1537 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15589547..15589996 | 16..465 | 2250 | 100 | Plus |
3L | 28110227 | 3L | 15600413..15600619 | 463..669 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 15600686..15600871 | 666..851 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:20:24 has no hits.
BO04295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:15 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32149-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:36 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32149-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:12 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RE | 688..1537 | 16..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:12 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RE | 688..1537 | 16..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:12 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15589550..15589996 | 19..465 | 100 | -> | Plus |
3L | 15600416..15600617 | 466..667 | 100 | -> | Plus |
3L | 15600688..15600871 | 668..851 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:12 Download gff for
BO04295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15582650..15583096 | 19..465 | 100 | -> | Plus |
arm_3L | 15593516..15593717 | 466..667 | 100 | -> | Plus |
arm_3L | 15593788..15593971 | 668..851 | 100 | -> | Plus |
BO04295.complete Sequence
1852 bp (1852 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629723
> BO04295.complete
GAAGTTATCAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCG
CCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCT
CCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGA
GGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGA
TCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCA
CCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGG
TCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGC
TCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCGGC
GAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAAC
GGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATC
TATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCC
CACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCC
CAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGG
ATGTGCTCAAGTTCAAGGTCTCTACAAAGATTATGCAGAATATAATTGAT
AAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGC
CCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCT
TTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACGCA
TTGCAACATTCTTTGGAGGCGGAGAAGACATGGCTGCAGTGCCAATGCGA
GCGTTGGGGCTTACTGGCCCAGGAGGAGTCCCGCTCGACGCCCGCCCTGC
TGACCAGCTCCAGTTCCGCATTGGAGAACAGTGTCCTGTCGCTGGGCGTT
TCCCCCGAACACTCGTTCATCGAGAGCTGCGCCCGTCTCTCAGTTTCGCT
GGAGGGACCTGGCATCTATGCCATGACTTCGTCGCCGTTGCCGGCGAAGC
GGAATGGCAATGGCAACGGAAATGCCACGGACTACGACTATGATGACTAT
GCCGACGATGATGAGGACAACGATGAGCTGGACGGCGTTCACGACTTTGG
TGCCGAATTGGAGATCAGTAGCATAGCTCCGCCGCAGGGAAGTCGTGGCA
TCTATCGCCACAAGCAGCGAGCCCAGCAGCAGCCACACCACTACCAACAA
CAGCAGCAGCAGCAGCAGGTGCCGCCTCAGCACCAGCGGGACTACGACGA
GGACGACGACGATGATGAGGATGAGATGACGTTTATTAAGCGCCGGTATC
GACAGAACAAAAAGAAGCCGGCGCCGCCGAGCAGCAGCCATCATCAGAGG
CGATTGCGCACTGGCACCAAGAGTCTCGATGGCGGAGGGGAGAGGCGCAC
GGGATCGGGAGCAGCGGGCGGATCAGGAGGAGGTGCTTCAGGCTCGGCAG
TTGGCAATCCGACGCCTCCCAAGCTCAAGCAGCGAACGTGCAGCCGCTGC
AATCGAGGCATTCGGCACAGTAGCTCGTGCAGCTCCAATTCCGCCGGAGC
AACTGGCTCGAATAGCGGAGGAGGCGGCAACGGAGGCTCCGGAGCCGGAA
ACGGAGGAGGGGCCGAGGGCGGCATGACCATGGAGGAGCTGAGGGCCGTC
AACCGATATGCGGAGAGCACCAAGAGCCTCTCGTATCTGCCACAGGTGAG
GGACGATTTCTTGCTGGGCTCACGCATTTCCGTTGCAAGCTTTCTAGACC
AT
BO04295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP71E-RA | 1821 | CG32149-PA | 1..1818 | 17..1834 | 9075 | 99.9 | Plus |
RhoGAP71E-RD | 2721 | CG32149-PD | 1..1781 | 17..1797 | 8890 | 99.9 | Plus |
RhoGAP71E-RC | 2691 | CG32149-PC | 1..1781 | 17..1797 | 8890 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP71E-RA | 3071 | CG32149-RA | 688..2506 | 16..1834 | 9080 | 99.9 | Plus |
RhoGAP71E-RD | 5854 | CG32149-RD | 688..2469 | 16..1797 | 8895 | 99.9 | Plus |
RhoGAP71E-RC | 5379 | CG32149-RC | 688..2469 | 16..1797 | 8895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15601631..15602554 | 911..1834 | 4605 | 99.9 | Plus |
3L | 28110227 | 3L | 15589547..15589996 | 16..465 | 2250 | 100 | Plus |
3L | 28110227 | 3L | 15600413..15600619 | 463..669 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 15600686..15600871 | 666..851 | 915 | 99.5 | Plus |
3L | 28110227 | 3L | 15601233..15601295 | 852..914 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:32:11 has no hits.
BO04295.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:21 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 1..1821 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:15 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 669..2486 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:01 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 689..2506 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:21 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 668..2495 | 16..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:05 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP71E-RA | 689..2506 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:05 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15589548..15589996 | 17..465 | 100 | -> | Plus |
3L | 15600416..15600617 | 466..667 | 100 | -> | Plus |
3L | 15600688..15600871 | 668..851 | 99 | -> | Plus |
3L | 15601233..15601295 | 852..914 | 100 | -> | Plus |
3L | 15601635..15602554 | 915..1836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:01 Download gff for
BO04295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15582648..15583096 | 17..465 | 100 | -> | Plus |
arm_3L | 15593516..15593717 | 466..667 | 100 | -> | Plus |
arm_3L | 15593788..15593971 | 668..851 | 99 | -> | Plus |
arm_3L | 15594333..15594395 | 852..914 | 100 | -> | Plus |
arm_3L | 15594735..15595654 | 915..1836 | 99 | | Plus |
BO04295.pep Sequence
Translation from 16 to 1852
> BO04295.pep
MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH
NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV
DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR
LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS
CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR
ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL
AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI
YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI
SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD
EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA
GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS
GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL
GSRISVASFLDH
BO04295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP71E-PA | 606 | CG32149-PA | 1..606 | 1..606 | 3186 | 100 | Plus |
RhoGAP71E-PD | 906 | CG32149-PD | 1..618 | 1..608 | 3132 | 96.9 | Plus |
RhoGAP71E-PC | 896 | CG32149-PC | 1..618 | 1..608 | 3132 | 96.9 | Plus |
RhoGAP71E-PE | 598 | CG32149-PE | 1..594 | 1..594 | 3125 | 99.8 | Plus |
RhoGAP71E-PB | 604 | CG32149-PB | 1..593 | 1..593 | 3124 | 100 | Plus |