Clone BO04295 Report

Search the DGRC for BO04295

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGAP71E-RA
Protein status:BO04295.pep: validated full length
Sequenced Size:1852

Clone Sequence Records

BO04295.3prime Sequence

856 bp (762 high quality bases) assembled on 2005-12-01

> BO04295.3prime
ATGGTCTAGAAAGCTTGCAACGGAAATGCGTGAGCCCAGCAAGAAATCGT
CCCTCACCTGTGGCAGATACGAGAGGCTCTTGGTGCTCTCCGCATATCGG
TTGACGGCCCTCAGCTCCTCCATGGTCATGCCGCCCTCGGCCCCTCCTCC
GTTTCCGGCTCCGGAGCCTCCGTTGCCGCCTCCTCCGCTATTCGAGCCAG
TTGCTCCGGCGGAATTGGAGCTGCACGAGCTACTGTGCCGAATGCCTCGA
TTGCAGCGGCTGCACGTTCGCTGCTTGAGCTTGGGAGGCGTCGGATTGCC
AACTGCCGAGCCTGAAGCACCTCCTCCTGATCCGCCCGCTGCTCCCGATC
CCGTGCGCCTCTCCCCTCCGCCATCGAGACTCTTGGTGCCAGTGCGCAAT
CGCCTCTGATGATGGCTGCTGCTCGGCGGCGCCGGCTTCTTTTTGTTCTG
TCGATACCGGCGCTTAATAAACGTCATCTCATCCTCATCATCGTCGTCGT
CCTCGTCGTAGTCCCGCTGGTGCTGAGGCGGCACCTGCTGCTGCTGCTGC
TGTTGTTGGTAGTGGTGTGGCTGCTGCTGGGCTCGCTGCTTGTGGCGATA
GATGCCACGACTTCCCTGCGGCGGAGCTATGCTACTGATCTCCAATTCGG
CACCAAAGTCGTGAACGCCGTCCAGCTCATCGTTGTCCTCATCATCGTCG
GCATAGTCATCATAGTCGTAGTCCGTGGCATTTCCGTTGCCATTGCCATT
CCGCTTCGCCGGCAACGGCGACGAAGTCATGGCATAGATGCCAGGTCCCT
CCAGCGAAACTGAGAGACGGGCGCAGCTCTCGATGAACGAGTGTTTCGGG
GAAACG

BO04295.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32149-PA 1821 RhoGAP71E-RA 981..1818 856..19 4140 99.7 Minus
CG32149-PC 2691 RhoGAP71E-RC 981..1781 856..56 3955 99.7 Minus
CG32149-PB 1815 RhoGAP71E-RB 981..1780 856..57 3950 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-RA 3071 CG32149-RA 1669..2506 856..19 4160 99.8 Minus
RhoGAP71E-RD 5854 CG32149-RD 1669..2469 856..56 3975 99.8 Minus
RhoGAP71E-RC 5379 CG32149-RC 1669..2469 856..56 3975 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15601717..15602554 856..19 4160 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 15:13:17 has no hits.

BO04295.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:14 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32149-PA 981..1821 16..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:34 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32149-PA 981..1821 16..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:22 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1669..2515 11..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:39 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1669..2515 11..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:39 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15601717..15602563 11..856 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:22 Download gff for BO04295.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15594817..15595663 11..856 99   Minus

BO04295.5prime Sequence

865 bp (673 high quality bases) assembled on 2005-12-01

> BO04295.5prime
GAAGTTATCAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCG
CCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCT
CCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGA
GGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGA
TCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCA
CCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGG
TCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGC
TCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCGGC
GAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAAC
GGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATC
TATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCC
CACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCC
CAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGG
ATGTGCTCAAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTGAT
AAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGC
CCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCT
TTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACGCA
TTGCAACATTCTTTG

BO04295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32149-PB 1815 RhoGAP71E-RB 1..849 17..865 4245 100 Plus
CG32149-PA 1821 RhoGAP71E-RA 1..849 17..865 4245 100 Plus
CG32149-PC 2691 RhoGAP71E-RC 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-RG 4053 CG32149-RG 688..1537 16..865 4250 100 Plus
RhoGAP71E-RF 4498 CG32149-RF 688..1537 16..865 4250 100 Plus
RhoGAP71E-RE 4934 CG32149-RE 688..1537 16..865 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15589547..15589996 16..465 2250 100 Plus
3L 28110227 3L 15600413..15600619 463..669 1035 100 Plus
3L 28110227 3L 15600686..15600871 666..851 930 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:20:24 has no hits.

BO04295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:15 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32149-PC 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:36 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32149-PC 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:12 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RE 688..1537 16..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:12 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RE 688..1537 16..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:12 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15589550..15589996 19..465 100 -> Plus
3L 15600416..15600617 466..667 100 -> Plus
3L 15600688..15600871 668..851 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:12 Download gff for BO04295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15582650..15583096 19..465 100 -> Plus
arm_3L 15593516..15593717 466..667 100 -> Plus
arm_3L 15593788..15593971 668..851 100 -> Plus

BO04295.complete Sequence

1852 bp (1852 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629723

> BO04295.complete
GAAGTTATCAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCG
CCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCT
CCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGA
GGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGA
TCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCA
CCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGG
TCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGC
TCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCGGC
GAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAAC
GGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATC
TATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCC
CACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCC
CAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGG
ATGTGCTCAAGTTCAAGGTCTCTACAAAGATTATGCAGAATATAATTGAT
AAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGC
CCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCT
TTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACGCA
TTGCAACATTCTTTGGAGGCGGAGAAGACATGGCTGCAGTGCCAATGCGA
GCGTTGGGGCTTACTGGCCCAGGAGGAGTCCCGCTCGACGCCCGCCCTGC
TGACCAGCTCCAGTTCCGCATTGGAGAACAGTGTCCTGTCGCTGGGCGTT
TCCCCCGAACACTCGTTCATCGAGAGCTGCGCCCGTCTCTCAGTTTCGCT
GGAGGGACCTGGCATCTATGCCATGACTTCGTCGCCGTTGCCGGCGAAGC
GGAATGGCAATGGCAACGGAAATGCCACGGACTACGACTATGATGACTAT
GCCGACGATGATGAGGACAACGATGAGCTGGACGGCGTTCACGACTTTGG
TGCCGAATTGGAGATCAGTAGCATAGCTCCGCCGCAGGGAAGTCGTGGCA
TCTATCGCCACAAGCAGCGAGCCCAGCAGCAGCCACACCACTACCAACAA
CAGCAGCAGCAGCAGCAGGTGCCGCCTCAGCACCAGCGGGACTACGACGA
GGACGACGACGATGATGAGGATGAGATGACGTTTATTAAGCGCCGGTATC
GACAGAACAAAAAGAAGCCGGCGCCGCCGAGCAGCAGCCATCATCAGAGG
CGATTGCGCACTGGCACCAAGAGTCTCGATGGCGGAGGGGAGAGGCGCAC
GGGATCGGGAGCAGCGGGCGGATCAGGAGGAGGTGCTTCAGGCTCGGCAG
TTGGCAATCCGACGCCTCCCAAGCTCAAGCAGCGAACGTGCAGCCGCTGC
AATCGAGGCATTCGGCACAGTAGCTCGTGCAGCTCCAATTCCGCCGGAGC
AACTGGCTCGAATAGCGGAGGAGGCGGCAACGGAGGCTCCGGAGCCGGAA
ACGGAGGAGGGGCCGAGGGCGGCATGACCATGGAGGAGCTGAGGGCCGTC
AACCGATATGCGGAGAGCACCAAGAGCCTCTCGTATCTGCCACAGGTGAG
GGACGATTTCTTGCTGGGCTCACGCATTTCCGTTGCAAGCTTTCTAGACC
AT

BO04295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-RA 1821 CG32149-PA 1..1818 17..1834 9075 99.9 Plus
RhoGAP71E-RD 2721 CG32149-PD 1..1781 17..1797 8890 99.9 Plus
RhoGAP71E-RC 2691 CG32149-PC 1..1781 17..1797 8890 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-RA 3071 CG32149-RA 688..2506 16..1834 9080 99.9 Plus
RhoGAP71E-RD 5854 CG32149-RD 688..2469 16..1797 8895 99.9 Plus
RhoGAP71E-RC 5379 CG32149-RC 688..2469 16..1797 8895 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15601631..15602554 911..1834 4605 99.9 Plus
3L 28110227 3L 15589547..15589996 16..465 2250 100 Plus
3L 28110227 3L 15600413..15600619 463..669 1035 100 Plus
3L 28110227 3L 15600686..15600871 666..851 915 99.5 Plus
3L 28110227 3L 15601233..15601295 852..914 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:32:11 has no hits.

BO04295.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:21 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 17..1837 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:15 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 669..2486 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:01 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 689..2506 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:21 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 668..2495 16..1842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:05 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 689..2506 17..1836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:05 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15589548..15589996 17..465 100 -> Plus
3L 15600416..15600617 466..667 100 -> Plus
3L 15600688..15600871 668..851 99 -> Plus
3L 15601233..15601295 852..914 100 -> Plus
3L 15601635..15602554 915..1836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:01 Download gff for BO04295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15582648..15583096 17..465 100 -> Plus
arm_3L 15593516..15593717 466..667 100 -> Plus
arm_3L 15593788..15593971 668..851 99 -> Plus
arm_3L 15594333..15594395 852..914 100 -> Plus
arm_3L 15594735..15595654 915..1836 99   Plus

BO04295.pep Sequence

Translation from 16 to 1852

> BO04295.pep
MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH
NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV
DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR
LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS
CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR
ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL
AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI
YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI
SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD
EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA
GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS
GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL
GSRISVASFLDH

BO04295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-PA 606 CG32149-PA 1..606 1..606 3186 100 Plus
RhoGAP71E-PD 906 CG32149-PD 1..618 1..608 3132 96.9 Plus
RhoGAP71E-PC 896 CG32149-PC 1..618 1..608 3132 96.9 Plus
RhoGAP71E-PE 598 CG32149-PE 1..594 1..594 3125 99.8 Plus
RhoGAP71E-PB 604 CG32149-PB 1..593 1..593 3124 100 Plus