Clone BO04296 Report

Search the DGRC for BO04296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:42
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptstai-RA
Protein status:BO04296.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO04296.3prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-01

> BO04296.3prime
ATGGTCTAGAAAGCTTGCGCCTGAGGAGGCAATGGCGCTCTGCTGACCAT
CCAAATCCTGGGCCTGGGCCTTGTTCTGGCGCACGAGCTCAGCGCGACGT
TCATGCTCCTTTAGGCGATCCAACATTTTCTTGATATTCTCATCGCGAAG
AGACTGAGCAATCTTCAACTTTTCCTCGATTGCCTTCTGCTCGTTGGCCT
TCTGCTGCTCAAGAGTCTCACGCGTCTTTTCGATATCCTGGGCATGGATC
TTTAGCTTCTCCTTCATGTCACTGATGATGGCCTCTCGCTTCTCCACATG
CAGCTCCATTTTCGACTCCAGCTGCTCCTTGGTCTGAGTAATAAACTCAT
TGGTGATCTCATCCTTTTTGCGAGTCGCCTCCTCGACTTTAGCCAGCTTA
GTGGAGATGTCAGCCATCTTCTTGGCTTCTAGAGAAATGCGACGTTCCTC
GGCCGCCTTAAGTTTCTGCTCAATCTCCTCGACGCTAACGTTCTTGCCAG
GGGTGACCGGTCGTTTTGGAACGGCCACATTGGGTGCCGGTTCGGCCAGG
ATGACCTCATAGCTCAATCCCCCGCGGGACTTCTCCTGGCAGCGAATCTC
TGTGGTAATAAATTTAACTTTCTTGCTGAGACGCGGCTGCTTGGAGCGAA
TCTTATTATTTTTCTTGATTGGCGCAGATCTTCTTGACACCGCTGGCAGA
ATTCCAGGTGCTCGGCACGTGTGGCAGAAGCACTGCATCACCGAGTCGCG
TACTAATCCAATCAGCATGTCGACTGATAACT

BO04296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31641-PA 753 stai-RA 1..750 768..19 3750 100 Minus
CG31641-PB 909 stai-RB 1..666 768..103 3330 100 Minus
CG31641-PC 774 stai-RC 29..531 605..103 2515 100 Minus
CG31641-PB 909 stai-RB 823..906 102..19 420 100 Minus
CG31641-PC 774 stai-RC 688..771 102..19 420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 2067 CG31641-RA 480..1229 768..19 3750 100 Minus
stai-RE 2395 CG31641-RE 652..1317 768..103 3330 100 Minus
stai-RB 2977 CG31641-RB 480..1145 768..103 3330 100 Minus
stai-RE 2395 CG31641-RE 1474..1557 102..19 420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122005..6122190 435..250 930 100 Minus
2L 23513712 2L 6121774..6121943 605..436 850 100 Minus
2L 23513712 2L 6122260..6122411 253..102 760 100 Minus
2L 23513712 2L 6113029..6113113 690..606 425 100 Minus
2L 23513712 2L 6122978..6123061 102..19 420 100 Minus
2L 23513712 2L 6110146..6110224 768..690 395 100 Minus
Blast to na_te.dros performed 2015-02-12 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 7724..7808 282..198 110 58.8 Minus

BO04296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:16 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
stai-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:37 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31641-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:23 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 14..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:11 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 14..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:11 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6110135..6110224 690..776 95 -> Minus
2L 6113030..6113113 606..689 100 -> Minus
2L 6121774..6121943 436..605 100 -> Minus
2L 6122005..6122190 250..435 100 -> Minus
2L 6122264..6122410 103..249 100 -> Minus
2L 6122978..6123065 14..102 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:23 Download gff for BO04296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6122005..6122190 250..435 100 -> Minus
arm_2L 6122264..6122410 103..249 100 -> Minus
arm_2L 6122978..6123065 14..102 97   Minus
arm_2L 6110135..6110224 690..776 95 -> Minus
arm_2L 6113030..6113113 606..689 100 -> Minus
arm_2L 6121774..6121943 436..605 100 -> Minus

BO04296.5prime Sequence

782 bp (781 high quality bases) assembled on 2005-11-29

> BO04296.5prime
GAAGTTATCAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGC
AGTGCTTCTGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCA
AGAAGATCTGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCC
GCGTCTCAGCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGG
AGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCA
CCCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAG
CGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTT
CTCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTC
GAGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCA
GACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAG
AGGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGAT
ATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAA
GGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATA
TCAAGAAAATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTC
GTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGC
CATTGCCTCCTCAGGCGCAAGCTTTCTAGACC

BO04296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31641-PA 753 stai-RA 1..750 17..766 3750 100 Plus
CG31641-PB 909 stai-RB 1..666 17..682 3330 100 Plus
CG31641-PC 774 stai-RC 29..531 180..682 2515 100 Plus
CG31641-PB 909 stai-RB 823..906 683..766 420 100 Plus
CG31641-PC 774 stai-RC 688..771 683..766 420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 2067 CG31641-RA 480..1229 17..766 3750 100 Plus
stai-RE 2395 CG31641-RE 652..1317 17..682 3330 100 Plus
stai-RB 2977 CG31641-RB 480..1145 17..682 3330 100 Plus
stai-RE 2395 CG31641-RE 1474..1557 683..766 420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122005..6122190 350..535 930 100 Plus
2L 23513712 2L 6121774..6121943 180..349 850 100 Plus
2L 23513712 2L 6122260..6122411 532..683 760 100 Plus
2L 23513712 2L 6113029..6113113 95..179 425 100 Plus
2L 23513712 2L 6122978..6123061 683..766 420 100 Plus
2L 23513712 2L 6110146..6110224 17..95 395 100 Plus
Blast to na_te.dros performed 2015-02-11 23:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 7724..7808 503..587 110 58.8 Plus

BO04296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:17 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:38 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31641-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:40 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 9..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:51 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
stai-RA 469..1233 9..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:51 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6122005..6122190 350..535 100 -> Plus
2L 6122264..6122410 536..682 100 -> Plus
2L 6122978..6123065 683..771 97   Plus
2L 6110135..6110224 9..95 95 -> Plus
2L 6113030..6113113 96..179 100 -> Plus
2L 6121774..6121943 180..349 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:40 Download gff for BO04296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6110135..6110224 9..95 95 -> Plus
arm_2L 6113030..6113113 96..179 100 -> Plus
arm_2L 6121774..6121943 180..349 100 -> Plus
arm_2L 6122005..6122190 350..535 100 -> Plus
arm_2L 6122264..6122410 536..682 100 -> Plus
arm_2L 6122978..6123065 683..771 97   Plus

BO04296.complete Sequence

784 bp (784 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629724

> BO04296.complete
GAAGTTATCAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGC
AGTGCTTCTGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCA
AGAAGATCTGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCC
GCGTCTCAGCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGG
AGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCA
CCCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAG
CGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTT
CTCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTC
GAGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCA
GACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAG
AGGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGAT
ATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAA
GGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATA
TCAAGAAAATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTC
GTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGC
CATTGCCTCCTCAGGCGCAAGCTTTCTAGACCAT

BO04296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 753 CG31641-PA 1..750 17..766 3750 100 Plus
stai-RE 909 CG31641-PE 1..666 17..682 3330 100 Plus
stai-RB 909 CG31641-PB 1..666 17..682 3330 100 Plus
stai-RE 909 CG31641-PE 823..906 683..766 420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 2067 CG31641-RA 480..1229 17..766 3750 100 Plus
stai-RE 2395 CG31641-RE 652..1317 17..682 3330 100 Plus
stai-RB 2977 CG31641-RB 480..1145 17..682 3330 100 Plus
stai-RE 2395 CG31641-RE 1474..1557 683..766 420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122005..6122190 350..535 930 100 Plus
2L 23513712 2L 6121774..6121943 180..349 850 100 Plus
2L 23513712 2L 6122260..6122411 532..683 760 100 Plus
2L 23513712 2L 6113029..6113113 95..179 425 100 Plus
2L 23513712 2L 6122978..6123061 683..766 420 100 Plus
2L 23513712 2L 6110146..6110224 17..95 395 100 Plus
Blast to na_te.dros performed 2014-11-28 08:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 7724..7808 503..587 110 58.8 Plus

BO04296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:26 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:41 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 466..1215 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:48 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 480..1229 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:26 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 455..1219 9..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:24 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 480..1229 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:24 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6110146..6110224 17..95 100 -> Plus
2L 6113030..6113113 96..179 100 -> Plus
2L 6121774..6121943 180..349 100 -> Plus
2L 6122005..6122190 350..535 100 -> Plus
2L 6122264..6122410 536..682 100 -> Plus
2L 6122978..6123061 683..768 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:48 Download gff for BO04296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6110146..6110224 17..95 100 -> Plus
arm_2L 6113030..6113113 96..179 100 -> Plus
arm_2L 6121774..6121943 180..349 100 -> Plus
arm_2L 6122005..6122190 350..535 100 -> Plus
arm_2L 6122264..6122410 536..682 100 -> Plus
arm_2L 6122978..6123061 683..768 97   Plus

BO04296.pep Sequence

Translation from 16 to 784

> BO04296.pep
MLIGLVRDSVMQCFCHTCRAPGILPAVSRRSAPIKKNNKIRSKQPRLSKK
VKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIE
QKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQL
ESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQKAIEEK
LKIAQSLRDENIKKMLDRLKEHERRAELVRQNKAQAQDLDGQQSAIASSG
ASFLDH

BO04296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
stai-PA 250 CG31641-PA 1..250 1..250 1235 100 Plus
stai-PE 302 CG31641-PE 1..302 1..250 1172 82.8 Plus
stai-PB 302 CG31641-PB 1..302 1..250 1172 82.8 Plus
stai-PD 381 CG31641-PD 133..381 54..250 892 78.7 Plus
stai-PC 257 CG31641-PC 11..257 56..250 888 78.9 Plus