Clone Sequence Records
BO04296.3prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-01
> BO04296.3prime
ATGGTCTAGAAAGCTTGCGCCTGAGGAGGCAATGGCGCTCTGCTGACCAT
CCAAATCCTGGGCCTGGGCCTTGTTCTGGCGCACGAGCTCAGCGCGACGT
TCATGCTCCTTTAGGCGATCCAACATTTTCTTGATATTCTCATCGCGAAG
AGACTGAGCAATCTTCAACTTTTCCTCGATTGCCTTCTGCTCGTTGGCCT
TCTGCTGCTCAAGAGTCTCACGCGTCTTTTCGATATCCTGGGCATGGATC
TTTAGCTTCTCCTTCATGTCACTGATGATGGCCTCTCGCTTCTCCACATG
CAGCTCCATTTTCGACTCCAGCTGCTCCTTGGTCTGAGTAATAAACTCAT
TGGTGATCTCATCCTTTTTGCGAGTCGCCTCCTCGACTTTAGCCAGCTTA
GTGGAGATGTCAGCCATCTTCTTGGCTTCTAGAGAAATGCGACGTTCCTC
GGCCGCCTTAAGTTTCTGCTCAATCTCCTCGACGCTAACGTTCTTGCCAG
GGGTGACCGGTCGTTTTGGAACGGCCACATTGGGTGCCGGTTCGGCCAGG
ATGACCTCATAGCTCAATCCCCCGCGGGACTTCTCCTGGCAGCGAATCTC
TGTGGTAATAAATTTAACTTTCTTGCTGAGACGCGGCTGCTTGGAGCGAA
TCTTATTATTTTTCTTGATTGGCGCAGATCTTCTTGACACCGCTGGCAGA
ATTCCAGGTGCTCGGCACGTGTGGCAGAAGCACTGCATCACCGAGTCGCG
TACTAATCCAATCAGCATGTCGACTGATAACT
BO04296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PA | 753 | stai-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
CG31641-PB | 909 | stai-RB | 1..666 | 768..103 | 3330 | 100 | Minus |
CG31641-PC | 774 | stai-RC | 29..531 | 605..103 | 2515 | 100 | Minus |
CG31641-PB | 909 | stai-RB | 823..906 | 102..19 | 420 | 100 | Minus |
CG31641-PC | 774 | stai-RC | 688..771 | 102..19 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RA | 2067 | CG31641-RA | 480..1229 | 768..19 | 3750 | 100 | Minus |
stai-RE | 2395 | CG31641-RE | 652..1317 | 768..103 | 3330 | 100 | Minus |
stai-RB | 2977 | CG31641-RB | 480..1145 | 768..103 | 3330 | 100 | Minus |
stai-RE | 2395 | CG31641-RE | 1474..1557 | 102..19 | 420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 435..250 | 930 | 100 | Minus |
2L | 23513712 | 2L | 6121774..6121943 | 605..436 | 850 | 100 | Minus |
2L | 23513712 | 2L | 6122260..6122411 | 253..102 | 760 | 100 | Minus |
2L | 23513712 | 2L | 6113029..6113113 | 690..606 | 425 | 100 | Minus |
2L | 23513712 | 2L | 6122978..6123061 | 102..19 | 420 | 100 | Minus |
2L | 23513712 | 2L | 6110146..6110224 | 768..690 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 16:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 282..198 | 110 | 58.8 | Minus |
BO04296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:16 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:37 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:23 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 14..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:11 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 14..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:11 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6110135..6110224 | 690..776 | 95 | -> | Minus |
2L | 6113030..6113113 | 606..689 | 100 | -> | Minus |
2L | 6121774..6121943 | 436..605 | 100 | -> | Minus |
2L | 6122005..6122190 | 250..435 | 100 | -> | Minus |
2L | 6122264..6122410 | 103..249 | 100 | -> | Minus |
2L | 6122978..6123065 | 14..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:23 Download gff for
BO04296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6122005..6122190 | 250..435 | 100 | -> | Minus |
arm_2L | 6122264..6122410 | 103..249 | 100 | -> | Minus |
arm_2L | 6122978..6123065 | 14..102 | 97 | | Minus |
arm_2L | 6110135..6110224 | 690..776 | 95 | -> | Minus |
arm_2L | 6113030..6113113 | 606..689 | 100 | -> | Minus |
arm_2L | 6121774..6121943 | 436..605 | 100 | -> | Minus |
BO04296.5prime Sequence
782 bp (781 high quality bases) assembled on 2005-11-29
> BO04296.5prime
GAAGTTATCAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGC
AGTGCTTCTGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCA
AGAAGATCTGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCC
GCGTCTCAGCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGG
AGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCA
CCCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAG
CGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTT
CTCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTC
GAGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCA
GACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAG
AGGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGAT
ATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAA
GGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATA
TCAAGAAAATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTC
GTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGC
CATTGCCTCCTCAGGCGCAAGCTTTCTAGACC
BO04296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PA | 753 | stai-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG31641-PB | 909 | stai-RB | 1..666 | 17..682 | 3330 | 100 | Plus |
CG31641-PC | 774 | stai-RC | 29..531 | 180..682 | 2515 | 100 | Plus |
CG31641-PB | 909 | stai-RB | 823..906 | 683..766 | 420 | 100 | Plus |
CG31641-PC | 774 | stai-RC | 688..771 | 683..766 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RA | 2067 | CG31641-RA | 480..1229 | 17..766 | 3750 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 652..1317 | 17..682 | 3330 | 100 | Plus |
stai-RB | 2977 | CG31641-RB | 480..1145 | 17..682 | 3330 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 1474..1557 | 683..766 | 420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 350..535 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121774..6121943 | 180..349 | 850 | 100 | Plus |
2L | 23513712 | 2L | 6122260..6122411 | 532..683 | 760 | 100 | Plus |
2L | 23513712 | 2L | 6113029..6113113 | 95..179 | 425 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123061 | 683..766 | 420 | 100 | Plus |
2L | 23513712 | 2L | 6110146..6110224 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 23:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 503..587 | 110 | 58.8 | Plus |
BO04296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:17 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:38 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:40 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:51 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 469..1233 | 9..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:51 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6122005..6122190 | 350..535 | 100 | -> | Plus |
2L | 6122264..6122410 | 536..682 | 100 | -> | Plus |
2L | 6122978..6123065 | 683..771 | 97 | | Plus |
2L | 6110135..6110224 | 9..95 | 95 | -> | Plus |
2L | 6113030..6113113 | 96..179 | 100 | -> | Plus |
2L | 6121774..6121943 | 180..349 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:40 Download gff for
BO04296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6110135..6110224 | 9..95 | 95 | -> | Plus |
arm_2L | 6113030..6113113 | 96..179 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 180..349 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 350..535 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 536..682 | 100 | -> | Plus |
arm_2L | 6122978..6123065 | 683..771 | 97 | | Plus |
BO04296.complete Sequence
784 bp (784 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629724
> BO04296.complete
GAAGTTATCAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGC
AGTGCTTCTGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCA
AGAAGATCTGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCC
GCGTCTCAGCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGG
AGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCA
CCCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAG
CGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTT
CTCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTC
GAGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCA
GACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAG
AGGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGAT
ATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAA
GGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATA
TCAAGAAAATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTC
GTGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGC
CATTGCCTCCTCAGGCGCAAGCTTTCTAGACCAT
BO04296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RA | 753 | CG31641-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
stai-RE | 909 | CG31641-PE | 1..666 | 17..682 | 3330 | 100 | Plus |
stai-RB | 909 | CG31641-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
stai-RE | 909 | CG31641-PE | 823..906 | 683..766 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RA | 2067 | CG31641-RA | 480..1229 | 17..766 | 3750 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 652..1317 | 17..682 | 3330 | 100 | Plus |
stai-RB | 2977 | CG31641-RB | 480..1145 | 17..682 | 3330 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 1474..1557 | 683..766 | 420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 350..535 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121774..6121943 | 180..349 | 850 | 100 | Plus |
2L | 23513712 | 2L | 6122260..6122411 | 532..683 | 760 | 100 | Plus |
2L | 23513712 | 2L | 6113029..6113113 | 95..179 | 425 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123061 | 683..766 | 420 | 100 | Plus |
2L | 23513712 | 2L | 6110146..6110224 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 503..587 | 110 | 58.8 | Plus |
BO04296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:26 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:41 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 466..1215 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:48 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 480..1229 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:26 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 455..1219 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:24 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RA | 480..1229 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:24 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6110146..6110224 | 17..95 | 100 | -> | Plus |
2L | 6113030..6113113 | 96..179 | 100 | -> | Plus |
2L | 6121774..6121943 | 180..349 | 100 | -> | Plus |
2L | 6122005..6122190 | 350..535 | 100 | -> | Plus |
2L | 6122264..6122410 | 536..682 | 100 | -> | Plus |
2L | 6122978..6123061 | 683..768 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:48 Download gff for
BO04296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6110146..6110224 | 17..95 | 100 | -> | Plus |
arm_2L | 6113030..6113113 | 96..179 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 180..349 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 350..535 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 536..682 | 100 | -> | Plus |
arm_2L | 6122978..6123061 | 683..768 | 97 | | Plus |
BO04296.pep Sequence
Translation from 16 to 784
> BO04296.pep
MLIGLVRDSVMQCFCHTCRAPGILPAVSRRSAPIKKNNKIRSKQPRLSKK
VKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIE
QKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQL
ESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQKAIEEK
LKIAQSLRDENIKKMLDRLKEHERRAELVRQNKAQAQDLDGQQSAIASSG
ASFLDH
BO04296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-PA | 250 | CG31641-PA | 1..250 | 1..250 | 1235 | 100 | Plus |
stai-PE | 302 | CG31641-PE | 1..302 | 1..250 | 1172 | 82.8 | Plus |
stai-PB | 302 | CG31641-PB | 1..302 | 1..250 | 1172 | 82.8 | Plus |
stai-PD | 381 | CG31641-PD | 133..381 | 54..250 | 892 | 78.7 | Plus |
stai-PC | 257 | CG31641-PC | 11..257 | 56..250 | 888 | 78.9 | Plus |