Clone Sequence Records
BO04311.3prime Sequence
479 bp (478 high quality bases) assembled on 2005-12-01
> BO04311.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCAGCCGCTTCATCAGCAGGTACATGT
GCTGGTCCACCTCGAAGCCATGAAGATTGTTGGCGTCACCCTGAAGTCGC
ATCAGCAAGCCGCCGAATGACACGTAGGCGGAGAGCCGGGAGGCCTCATT
GTGTGCTTCGTCGCCCTCGATCCTGTAGATCTTGCCGTACATCACGTACT
CAAAGCTGTCCGCCCGCGTTCCCTCGTGCTCCATTGGATTGTACTCCCCG
CTGTCCGGGCAACCATCCTCGCGCAGGGTGGTGGCCAAAACCAGGCGGAA
CTTGTCGCCCAGCTCCATGGGGTATAGCCACGAGTTGATGTCCAGGATGA
GGTCCATCTTAAACGACTCGGACTCGCAGTGCAGGCGGGATACACGGTCG
AACTTTTTGCCCTCCGGATCCATGTCCTTTACGTTGAAGATGTCCTCAAA
GAGTACTCCAGCCATGTCGACTGATAACT
BO04311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11246-PA | 450 | Rpb8-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb8-RA | 692 | CG11246-RA | 191..637 | 465..19 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729193..21729639 | 465..19 | 2235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:59:39 has no hits.
BO04311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:34 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-PA | 1..450 | 16..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:06 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11246-PA | 1..450 | 16..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:51 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 184..648 | 7..472 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:15 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 184..648 | 7..472 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:15 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729181..21729635 | 23..479 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:51 Download gff for
BO04311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722281..21722735 | 23..479 | 98 | <- | Minus |
BO04311.5prime Sequence
479 bp (478 high quality bases) assembled on 2005-11-29
> BO04311.5prime
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCGCAAGCTTTCTAGACC
BO04311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11246-PA | 450 | Rpb8-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb8-RA | 692 | CG11246-RA | 191..637 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729193..21729639 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:20:33 has no hits.
BO04311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:35 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-PA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:07 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11246-PA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:14 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 184..648 | 10..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:13 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 184..648 | 10..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:13 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729182..21729635 | 5..459 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:14 Download gff for
BO04311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722282..21722735 | 5..459 | 99 | <- | Plus |
BO04311.complete Sequence
481 bp (481 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629725
> BO04311.complete
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCGCAAGCTTTCTAGACCAT
BO04311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb8-RA | 450 | CG11246-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb8-RA | 692 | CG11246-RA | 191..637 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729193..21729639 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:53 has no hits.
BO04311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:44 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 1..450 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:29 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 172..636 | 10..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:16 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 191..637 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:44 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 172..636 | 10..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:40 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb8-RA | 191..637 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:40 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729193..21729639 | 17..465 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:16 Download gff for
BO04311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722293..21722739 | 17..465 | 99 | | Plus |
BO04311.pep Sequence
Translation from 16 to 481
> BO04311.pep
MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPM
ELGDKFRLVLATTLREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIE
GDEAHNEASRLSAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKRLAFA
SFLDH
BO04311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb8-PA | 149 | CG11246-PA | 1..149 | 1..149 | 790 | 100 | Plus |