Clone BO04311 Report

Search the DGRC for BO04311

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptRpb8-RA
Protein status:BO04311.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO04311.3prime Sequence

479 bp (478 high quality bases) assembled on 2005-12-01

> BO04311.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCAGCCGCTTCATCAGCAGGTACATGT
GCTGGTCCACCTCGAAGCCATGAAGATTGTTGGCGTCACCCTGAAGTCGC
ATCAGCAAGCCGCCGAATGACACGTAGGCGGAGAGCCGGGAGGCCTCATT
GTGTGCTTCGTCGCCCTCGATCCTGTAGATCTTGCCGTACATCACGTACT
CAAAGCTGTCCGCCCGCGTTCCCTCGTGCTCCATTGGATTGTACTCCCCG
CTGTCCGGGCAACCATCCTCGCGCAGGGTGGTGGCCAAAACCAGGCGGAA
CTTGTCGCCCAGCTCCATGGGGTATAGCCACGAGTTGATGTCCAGGATGA
GGTCCATCTTAAACGACTCGGACTCGCAGTGCAGGCGGGATACACGGTCG
AACTTTTTGCCCTCCGGATCCATGTCCTTTACGTTGAAGATGTCCTCAAA
GAGTACTCCAGCCATGTCGACTGATAACT

BO04311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11246-PA 450 Rpb8-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-RA 692 CG11246-RA 191..637 465..19 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729193..21729639 465..19 2235 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:59:39 has no hits.

BO04311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:34 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-PA 1..450 16..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:06 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11246-PA 1..450 16..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:51 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 184..648 7..472 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:15 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 184..648 7..472 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:15 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21729181..21729635 23..479 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:51 Download gff for BO04311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722281..21722735 23..479 98 <- Minus

BO04311.5prime Sequence

479 bp (478 high quality bases) assembled on 2005-11-29

> BO04311.5prime
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCGCAAGCTTTCTAGACC

BO04311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11246-PA 450 Rpb8-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-RA 692 CG11246-RA 191..637 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729193..21729639 17..463 2235 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:20:33 has no hits.

BO04311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:35 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-PA 1..450 17..466 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:07 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11246-PA 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:14 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 184..648 10..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:13 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 184..648 10..475 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:13 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21729182..21729635 5..459 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:14 Download gff for BO04311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722282..21722735 5..459 99 <- Plus

BO04311.complete Sequence

481 bp (481 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629725

> BO04311.complete
GAAGTTATCAGTCGACATGGCTGGAGTACTCTTTGAGGACATCTTCAACG
TAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTG
CACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTC
GTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCA
CCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGTACAATCCAATG
GAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTGATGTACGGCAA
GATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGCCTCCCGGCTCT
CCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCC
AACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAA
GCGGCTGGCCTTCGCAAGCTTTCTAGACCAT

BO04311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-RA 450 CG11246-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-RA 692 CG11246-RA 191..637 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729193..21729639 17..463 2235 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:53 has no hits.

BO04311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:44 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 1..450 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:29 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 172..636 10..475 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:16 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 191..637 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:44 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 172..636 10..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:40 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 191..637 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:40 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21729193..21729639 17..465 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:16 Download gff for BO04311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722293..21722739 17..465 99   Plus

BO04311.pep Sequence

Translation from 16 to 481

> BO04311.pep
MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPM
ELGDKFRLVLATTLREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIE
GDEAHNEASRLSAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKRLAFA
SFLDH

BO04311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-PA 149 CG11246-PA 1..149 1..149 790 100 Plus