Clone Sequence Records
BO04318.3prime Sequence
402 bp (328 high quality bases) assembled on 2005-12-01
> BO04318.3prime
ATGGTCTAGAAAGCTTGCTGTGGCCACGATGTATTTGGGAGTCTGGTACA
TTTCGTAGGCGAATTCCTCGCGGTGACTGGGATCGTACTCCAGACCCACA
TAGTCTATTTCCAGGCCAAACGGGCCATCCATTCCCTTCTTTGCGGCAAC
GGAGAATCCGAAGTGGGTTACCCTGTTCAGCGGTATGGCGCCCTGGCGAT
CCTGGACACGTCCCTTGGAAGACAGGAAGAACTTGGAGAAGGGAATCTTC
GCTATCTGCCAGTGGGGACCTCCGCGCGTGTACAGAACATAGTGGTAGAT
GTCGTTCCACATCAGGTCGAAGTAGCCTTCGGTATGCAGGTTGATCAGGT
AGCTGCGTCCATCGCCTCGCACCCTCATGACCAGCATGTTGTACTGCGTC
CA
BO04318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-PA | 891 | CG7598-RA | 505..887 | 402..20 | 1865 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-RA | 1048 | CG7598-RA | 584..966 | 402..20 | 1885 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29737606..29737988 | 402..20 | 1885 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:04:42 has no hits.
BO04318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:47 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-PA | 506..891 | 15..401 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:25 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-PA | 506..891 | 15..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:37:45 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 585..970 | 15..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:37 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 585..970 | 15..401 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:37 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29737607..29737992 | 15..401 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:37:45 Download gff for
BO04318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25563329..25563714 | 15..401 | 98 | | Minus |
BO04318.5prime Sequence
387 bp (288 high quality bases) assembled on 2005-12-01
> BO04318.5prime
GAAGTTATCAGTCGACATGAATAGTCTCCTGCGACAAGGACTCCGCCTGG
GCTGCTGCCTTCCGGCTGTCCAGCAGCAAATCCACACCACCGCCGTGCAC
AGGACATTCTGGGAGCGCGAGAAAAAGTCCGGCTACAAGACCAAGCTGCC
GGAACCCTCGAAGAAGCAGATGATCATGGACGGATTGAGGGACCTTAAAG
AGGAGATGAAGCTGTGGCGCCAGGAGGTCAAGGAGCAGTTCGAAAGTGAT
CCCATCCTGGTCTTCCGGCCGGGTGAAACGGATGTGGTGTTCGATTTCAA
GGCGCCGGATGTGCTGGACAAGTGGACGGTGACCACCGATGCGGATCACG
GCGAGGGCAAGAGTACTGCCACTCTGGAACTAAGTGC
BO04318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-PA | 891 | CG7598-RA | 1..371 | 17..387 | 1730 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-RA | 1048 | CG7598-RA | 80..450 | 17..387 | 1780 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29737044..29737414 | 17..387 | 1780 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:18:41 has no hits.
BO04318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:59:48 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-PA | 1..371 | 17..387 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:26 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-PA | 1..371 | 17..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:58 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 80..450 | 17..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:26 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 80..450 | 17..387 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:26 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29737044..29737414 | 17..387 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:58 Download gff for
BO04318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25562766..25563136 | 17..387 | 98 | | Plus |
BO04318.complete Sequence
922 bp assembled on 2008-11-10
GenBank Submission: KX795480
> BO04318.complete
GAAGTTATCAGTCGACATGAATAGTCTCCTGCGACAAGGACTCCGCCTGG
GCTGCTGCCTTCCGGCTGTCCAGCAGCAAATCCACACCACCGCCGTGCAC
AGGACATTCTGGGAGCGCGAGAAAAAGTCCGGCTACAAGACCAAGCTGCC
GGAACCCTCGAAGAAGCAGATGATCATGGACGGATTGAGGGACCTTAAAG
AGGAGATGAAGCTGTGGCGCCAGGAGGTCAAGGAGCAGTTCGAAAGTGAT
CCCATCCTGGTCTTCCGGCCGGGTGAAACGGATGTGGTGTTCGATTTCAA
GGCGCCGGATGTGCTGGACAAGTGGACGGTGACCACCGATGCGGATCACG
GCGAGGGCAAGAGTACTGCCACTCTGGAACTAAGTGCAGCCGGTGCTGGA
CTCTTCCATGGCCAAGTCAACTCGGATCACACCAAGGATGGCATTATCAA
AAGGACGGGATATGCGAACATTCGCACGAAGAGAGTGCGGAAATCCTTTA
AGCGCGAGACCACCTATGACTGGACGCAGTACAACATGCTGGTCATGAAG
GTGCGAGGCGATGGACGCAGCTACCTGATCAACCTGCATACCGAAGGCTA
CTTCGACCTGATGTGGAACGACATCTACCACTATGTTCTGTACACGCGCG
GAGGTCCCCACTGGCAGATAGCGAAGATTCCCTTCTCCAAGTTCTTCCTG
TCTTCCAAGGGACGTGTCCAGGATCGCCAGGGCGCCATACCGCTGAACAG
GGTAACCCACTTCGGATTCTCCGTTGCCGCAAAGAAGGGAATGGATGGCC
CGTTTGGCCTGGAAATAGACTATGTGGGTCTGGAGTACGATCCCAGTCAC
CGCGAGGAATTCGCCTACGAAATGTACCAGACTCCCAAATACATCGTGGC
CACAGCAAGCTTTCTAGACCAT
BO04318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-RA | 891 | CG7598-PA | 1..887 | 17..903 | 4345 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-RA | 1048 | CG7598-RA | 80..966 | 17..903 | 4345 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29737044..29737517 | 17..490 | 2295 | 98.9 | Plus |
| 3R | 32079331 | 3R | 29737575..29737988 | 490..903 | 2055 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:33 has no hits.
BO04318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:26 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 75..965 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:05:25 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 80..967 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:40 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 75..962 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:21 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7598-RA | 80..967 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:21 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29737044..29737517 | 17..490 | 98 | -> | Plus |
| 3R | 29737576..29737989 | 491..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:05:25 Download gff for
BO04318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25562766..25563239 | 17..490 | 98 | -> | Plus |
| arm_3R | 25563298..25563711 | 491..906 | 99 | | Plus |
BO04318.pep Sequence
Translation from 16 to 922
> BO04318.pep
MNSLLRQGLRLGCCLPAVQQQIHTTAVHRTFWEREKKSGYKTKLPEPSKK
QMIMDGLRDLKEEMKLWRQEVKEQFESDPILVFRPGETDVVFDFKAPDVL
DKWTVTTDADHGEGKSTATLELSAAGAGLFHGQVNSDHTKDGIIKRTGYA
NIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLMW
NDIYHYVLYTRGGPHWQIAKIPFSKFFLSSKGRVQDRQGAIPLNRVTHFG
FSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMYQTPKYIVATASFL
DH
BO04318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7598-PA | 296 | CG7598-PA | 1..296 | 1..296 | 1588 | 100 | Plus |
