Clone BO04328 Report

Search the DGRC for BO04328

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG7214-RA
Protein status:BO04328.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO04328.3prime Sequence

458 bp (457 high quality bases) assembled on 2005-12-01

> BO04328.3prime
ATGGTCTAGAAAGCTTGCCAGAGTTCCGGGGGCAGGGGCCACGTTCACGG
AGGTGGCAGAGTTGATGTGTCCGGCGAGGGGAGCGGTGTGGATGGCACCA
CGGGTCTTGGCCACATAGACGCCCTCATGGCCATGGCCGGCGGCGAGACC
GGGTCCCTGGGCCAGGTTGATTCCGGGAACAGCAGCGCCGTGCCATCCGG
CACCGGTCAGACCCCAGGGAGCAGCGCTGGCATGGACGGCAACGGCGGCA
GGGGCACCCCAGGGAGCACCGTTCCAGGCGCCGTTCCAGGCACCGTTCCA
GGCACCATTCCAGGCTCCGTTCCACAGACCGGCTCCATGGGCCACGGGGC
TCACATAGGACACACCGGGAGCGATCTGGGCCCACGAGGCATGAGCTCCA
GCCAGGGCGCACACGAACATGACTACGGCAACGGCGAACTTCATGTCGAC
TGATAACT

BO04328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 429 CG7214-RA 1..426 444..19 2130 100 Minus
CG7216-PA 408 Acp1-RA 317..360 107..64 145 93.1 Minus
CG31904-PD 1212 CG31904-RD 980..1023 107..64 145 93.1 Minus
CG31904-PB 1212 CG31904-RB 980..1023 107..64 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..512 446..19 2140 100 Minus
Acp1-RA 858 CG7216-RA 369..416 111..64 180 91.7 Minus
CG31904-RB 3572 CG31904-RB 3087..3134 111..64 180 91.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744211..7744632 19..440 2110 100 Plus
2L 23513712 2L 7734853..7734900 64..111 180 91.7 Plus
2L 23513712 2L 7741004..7741051 64..111 180 91.7 Plus
Blast to na_te.dros performed on 2015-02-12 23:56:49 has no hits.

BO04328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:05 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:49 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:40 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..516 14..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:42 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..516 14..452 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:42 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7744207..7744632 14..440 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:40 Download gff for BO04328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744207..7744632 14..440 99   Plus

BO04328.5prime Sequence

458 bp (457 high quality bases) assembled on 2005-11-29

> BO04328.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGTTGCCGTAGTCATGTTCGTGT
GCGCCCTGGCTGGAGCTCATGCCTCGTGGGCCCAGATCGCTCCCGGTGTG
TCCTATGTGAGCCCCGTGGCCCATGGAGCCGGTCTGTGGAACGGAGCCTG
GAATGGTGCCTGGAACGGTGCCTGGAACGGCGCCTGGAACGGTGCTCCCT
GGGGTGCCCCTGCCGCCGTTGCCGTCCATGCCAGCGCTGCTCCCTGGGGT
CTGACCGGTGCCGGATGGCACGGCGCTGCTGTTCCCGGAATCAACCTGGC
CCAGGGACCCGGTCTCGCCGCCGGCCATGGCCATGAGGGCGTCTATGTGG
CCAAGACCCGTGGTGCCATCCACACCGCTCCCCTCGCCGGACACATCAAC
TCTGCCACCTCCGTGAACGTGGCCCCTGCCCCCGGAACTCTGGCAAGCTT
TCTAGACC

BO04328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 429 CG7214-RA 1..426 17..442 2130 100 Plus
CG7216-PA 408 Acp1-RA 317..360 354..397 145 93.1 Plus
CG31904-PD 1212 CG31904-RD 980..1023 354..397 145 93.1 Plus
CG31904-PB 1212 CG31904-RB 980..1023 354..397 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..512 15..442 2140 100 Plus
Acp1-RA 858 CG7216-RA 369..416 350..397 180 91.7 Plus
CG31904-RB 3572 CG31904-RB 3087..3134 350..397 180 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744211..7744632 442..21 2110 100 Minus
2L 23513712 2L 7734853..7734900 397..350 180 91.7 Minus
2L 23513712 2L 7741004..7741051 397..350 180 91.7 Minus
Blast to na_te.dros performed on 2015-02-11 04:43:59 has no hits.

BO04328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:06 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:50 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:33 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..516 9..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:07 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 79..516 9..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:07 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7744207..7744632 21..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:33 Download gff for BO04328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744207..7744632 21..447 99   Minus

BO04328.complete Sequence

460 bp (460 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629727

> BO04328.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGTTGCCGTAGTCATGTTCGTGT
GCGCCCTGGCTGGAGCTCATGCCTCGTGGGCCCAGATCGCTCCCGGTGTG
TCCTATGTGAGCCCCGTGGCCCATGGAGCCGGTCTGTGGAACGGAGCCTG
GAATGGTGCCTGGAACGGTGCCTGGAACGGCGCCTGGAACGGTGCTCCCT
GGGGTGCCCCTGCCGCCGTTGCCGTCCATGCCAGCGCTGCTCCCTGGGGT
CTGACCGGTGCCGGATGGCACGGCGCTGCTGTTCCCGGAATCAACCTGGC
CCAGGGACCCGGTCTCGCCGCCGGCCATGGCCATGAGGGCGTCTATGTGG
CCAAGACCCGTGGTGCCATCCACACCGCTCCCCTCGCCGGACACATCAAC
TCTGCCACCTCCGTGAACGTGGCCCCTGCCCCCGGAACTCTGGCAAGCTT
TCTAGACCAT

BO04328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 429 CG7214-PA 1..426 17..442 2130 100 Plus
Acp1-RA 408 CG7216-PA 313..360 350..397 180 91.7 Plus
CG31904-RB 1212 CG31904-PB 976..1023 350..397 180 91.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-RA 1041 CG7214-RA 85..512 15..442 2140 100 Plus
Acp1-RA 858 CG7216-RA 369..416 350..397 180 91.7 Plus
CG31904-RB 3572 CG31904-RB 3087..3134 350..397 180 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7744211..7744632 442..21 2110 100 Minus
2L 23513712 2L 7734853..7734900 397..350 180 91.7 Minus
2L 23513712 2L 7741004..7741051 397..350 180 91.7 Minus
Blast to na_te.dros performed on 2014-11-27 15:42:49 has no hits.

BO04328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:33 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:44 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 81..518 9..447 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:05 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 87..512 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:33 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 81..518 9..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:38 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
CG7214-RA 87..512 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:38 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7744209..7744635 17..444 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:05 Download gff for BO04328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7744209..7744635 17..444 98   Minus

BO04328.pep Sequence

Translation from 16 to 460

> BO04328.pep
MKFAVAVVMFVCALAGAHASWAQIAPGVSYVSPVAHGAGLWNGAWNGAWN
GAWNGAWNGAPWGAPAAVAVHASAAPWGLTGAGWHGAAVPGINLAQGPGL
AAGHGHEGVYVAKTRGAIHTAPLAGHINSATSVNVAPAPGTLASFLDH

BO04328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7214-PA 142 CG7214-PA 1..142 1..142 783 100 Plus
Acp1-PA 135 CG7216-PA 1..135 1..142 211 41.3 Plus
CG7203-PC 129 CG7203-PC 1..128 1..141 164 36.7 Plus
CG7203-PB 129 CG7203-PB 1..128 1..141 164 36.7 Plus
CG31904-PB 403 CG31904-PB 224..341 3..127 147 37.7 Plus