Clone Sequence Records
BO04330.3prime Sequence
482 bp (481 high quality bases) assembled on 2005-12-01
> BO04330.3prime
ATGGTCTAGAAAGCTTGCGTGCTCCTCCAGCTCGAGTCCATGCTCCTTCA
TTTGCTCGTAAATGCATTCCTCGTAGGCGAAGGCAGCGTCGCAATGATCC
TCGGGTGTCTCGATGGCCTCGCACTTGGCCACCACCTCGGCGGGAGCGTC
TTCCTTCTCTGCATCGTGCTTGCTCATGACCTTGACCAACTCGATGGCGT
GTTCCTTGTTCAGCTTACCGGATTCATCCATTATCTGCAGCTTTTTCATC
ACGCAGGCGCGCAGGCACTTGGCCTCGTGTCTCTCGGGCAGGTCGTGGCT
CATCAGCTGCTCCACATCCTCATCGGTGGCTCCCGTCTCAGCCTTGCACT
CGTTGGCCAGCTCGGCGGCGTGGTCCCTGTTGATCTCCTCGTGCGGCTTG
GCGCTGGTGGCGCCCAGGCAGAGGATGCCCACTAGGAGCAGGACGGTCAG
GTGAACCAGATGCGACATGTCGACTGATAACT
BO04330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1668-PA | 453 | Pbprp2-RA | 1..450 | 468..19 | 2250 | 100 | Minus |
CG1668-PB | 453 | Pbprp2-RB | 1..450 | 468..19 | 2250 | 100 | Minus |
CG6641-PA | 432 | Pbprp5-RA | 189..215 | 271..245 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19d-RB | 624 | CG1668-RB | 44..498 | 473..19 | 2260 | 99.8 | Minus |
Obp19d-RA | 1101 | CG1668-RA | 521..975 | 473..19 | 2260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20420133..20420285 | 473..321 | 750 | 99.3 | Minus |
X | 23542271 | X | 20420577..20420713 | 231..95 | 685 | 100 | Minus |
X | 23542271 | X | 20420415..20420504 | 321..232 | 450 | 100 | Minus |
X | 23542271 | X | 20420778..20420853 | 94..19 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:03 has no hits.
BO04330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:08 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1668-PB | 1..453 | 16..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:54 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1668-PB | 1..453 | 16..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:09 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 521..975 | 19..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:06 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 521..975 | 19..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:06 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20420133..20420285 | 321..473 | 99 | -> | Minus |
X | 20420416..20420504 | 232..320 | 100 | -> | Minus |
X | 20420577..20420713 | 95..231 | 100 | -> | Minus |
X | 20420778..20420853 | 19..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:09 Download gff for
BO04330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20291805..20291880 | 19..94 | 100 | | Minus |
arm_X | 20291443..20291531 | 232..320 | 100 | -> | Minus |
arm_X | 20291160..20291312 | 321..473 | 99 | -> | Minus |
arm_X | 20291604..20291740 | 95..231 | 100 | -> | Minus |
BO04330.5prime Sequence
482 bp (481 high quality bases) assembled on 2005-12-01
> BO04330.5prime
GAAGTTATCAGTCGACATGTCGCATCTGGTTCACCTGACCGTCCTGCTCC
TAGTGGGCATCCTCTGCCTGGGCGCCACCAGCGCCAAGCCGCACGAGGAG
ATCAACAGGGACCACGCCGCCGAGCTGGCCAACGAGTGCAAGGCTGAGAC
GGGAGCCACCGATGAGGATGTGGAGCAGCTGATGAGCCACGACCTGCCCG
AGAGACACGAGGCCAAGTGCCTGCGCGCCTGCGTGATGAAAAAGCTGCAG
ATAATGGATGAATCCGGTAAGCTGAACAAGGAACACGCCATCGAGTTGGT
CAAGGTCATGAGCAAGCACGATGCAGAGAAGGAAGACGCTCCCGCCGAGG
TGGTGGCCAAGTGCGAGGCCATCGAGACACCCGAGGATCATTGCGACGCT
GCCTTCGCCTACGAGGAATGCATTTACGAGCAAATGAAGGAGCATGGACT
CGAGCTGGAGGAGCACGCAAGCTTTCTAGACC
BO04330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1668-PA | 453 | Pbprp2-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
CG1668-PB | 453 | Pbprp2-RB | 1..450 | 17..466 | 2250 | 100 | Plus |
CG6641-PA | 432 | Pbprp5-RA | 189..215 | 214..240 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19d-RB | 624 | CG1668-RB | 44..498 | 12..466 | 2260 | 99.8 | Plus |
Obp19d-RA | 1101 | CG1668-RA | 521..975 | 12..466 | 2260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20420133..20420285 | 12..164 | 750 | 99.3 | Plus |
X | 23542271 | X | 20420577..20420713 | 254..390 | 685 | 100 | Plus |
X | 23542271 | X | 20420415..20420504 | 164..253 | 450 | 100 | Plus |
X | 23542271 | X | 20420778..20420853 | 391..466 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:17:26 has no hits.
BO04330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:09 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1668-PB | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:56 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1668-PB | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:40:53 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 521..975 | 12..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:02 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 521..975 | 12..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:02 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20420133..20420285 | 12..164 | 99 | -> | Plus |
X | 20420416..20420504 | 165..253 | 100 | -> | Plus |
X | 20420577..20420713 | 254..390 | 100 | -> | Plus |
X | 20420778..20420853 | 391..466 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:40:53 Download gff for
BO04330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20291160..20291312 | 12..164 | 99 | -> | Plus |
arm_X | 20291443..20291531 | 165..253 | 100 | -> | Plus |
arm_X | 20291604..20291740 | 254..390 | 100 | -> | Plus |
arm_X | 20291805..20291880 | 391..466 | 100 | | Plus |
BO04330.complete Sequence
484 bp (484 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629728
> BO04330.complete
GAAGTTATCAGTCGACATGTCGCATCTGGTTCACCTGACCGTCCTGCTCC
TAGTGGGCATCCTCTGCCTGGGCGCCACCAGCGCCAAGCCGCACGAGGAG
ATCAACAGGGACCACGCCGCCGAGCTGGCCAACGAGTGCAAGGCTGAGAC
GGGAGCCACCGATGAGGATGTGGAGCAGCTGATGAGCCACGACCTGCCCG
AGAGACACGAGGCCAAGTGCCTGCGCGCCTGCGTGATGAAAAAGCTGCAG
ATAATGGATGAATCCGGTAAGCTGAACAAGGAACACGCCATCGAGTTGGT
CAAGGTCATGAGCAAGCACGATGCAGAGAAGGAAGACGCTCCCGCCGAGG
TGGTGGCCAAGTGCGAGGCCATCGAGACACCCGAGGATCATTGCGACGCT
GCCTTCGCCTACGAGGAATGCATTTACGAGCAAATGAAGGAGCATGGACT
CGAGCTGGAGGAGCACGCAAGCTTTCTAGACCAT
BO04330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19d-RB | 453 | CG1668-PB | 1..450 | 17..466 | 2250 | 100 | Plus |
Obp19d-RA | 453 | CG1668-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19d-RB | 624 | CG1668-RB | 44..498 | 12..466 | 2260 | 99.8 | Plus |
Obp19d-RA | 1101 | CG1668-RA | 521..975 | 12..466 | 2260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20420133..20420285 | 12..164 | 750 | 99.3 | Plus |
X | 23542271 | X | 20420577..20420713 | 254..390 | 685 | 100 | Plus |
X | 23542271 | X | 20420415..20420504 | 164..253 | 450 | 100 | Plus |
X | 23542271 | X | 20420778..20420853 | 391..466 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:49 has no hits.
BO04330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:59 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbprp2-RB | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:07 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbprp2-RA | 521..975 | 12..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:39 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 526..975 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:59 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbprp2-RA | 521..975 | 12..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:53 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19d-RA | 526..975 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:53 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20420138..20420285 | 17..164 | 100 | -> | Plus |
X | 20420416..20420504 | 165..253 | 100 | -> | Plus |
X | 20420577..20420713 | 254..390 | 100 | -> | Plus |
X | 20420778..20420853 | 391..468 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:39 Download gff for
BO04330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20291165..20291312 | 17..164 | 100 | -> | Plus |
arm_X | 20291443..20291531 | 165..253 | 100 | -> | Plus |
arm_X | 20291604..20291740 | 254..390 | 100 | -> | Plus |
arm_X | 20291805..20291880 | 391..468 | 97 | | Plus |
BO04330.pep Sequence
Translation from 16 to 484
> BO04330.pep
MSHLVHLTVLLLVGILCLGATSAKPHEEINRDHAAELANECKAETGATDE
DVEQLMSHDLPERHEAKCLRACVMKKLQIMDESGKLNKEHAIELVKVMSK
HDAEKEDAPAEVVAKCEAIETPEDHCDAAFAYEECIYEQMKEHGLELEEH
ASFLDH
BO04330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19d-PB | 150 | CG1668-PB | 1..150 | 1..150 | 787 | 100 | Plus |
Obp19d-PA | 150 | CG1668-PA | 1..150 | 1..150 | 787 | 100 | Plus |
Obp28a-PA | 143 | CG6641-PA | 4..142 | 8..145 | 244 | 38.3 | Plus |