Clone Sequence Records
BO04332.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-01
> BO04332.3prime
ATGGTCTAGAAAGCTTGCAAGGCGCCGGAAAATGGCCAGAAAATGATCGC
CCTTGTTTCGAACCACCTTAGCGCCCTCCTCGCTGCTTTGGTACAGCTTC
GGGGTGATGGGATCAGCATTGGCCTCCTCTTCGGTAAGACGCTCGTACAG
CGGATGCTCCTCCATATGTGTCACTATCCACTTGTGCAAGTCCTCAACGT
CCGTCATGGTGTACAACAGACCCCCCTTCCTGAGGATATAGGCATATTCG
GAGAGTAGAGCCTGGTTGATAATACGCCACTTGTGCTTGGCGCGCTTGAA
ATGTGGGTCCGGGTAGAGGAAGAACATCTTCTCCAGCTGGCCCTTTACGA
AGTAGTTGGGCAGATACTTCATGGCGTTGGTGCGTAAGCAGGCAATGTTC
TGGTATGCACCCGTATCCGCGCATCGTCGACGCAGTGCCGCAATCCGGTC
CACCACGTAGTCCGACACCTTGACGCGGATTTCCATGCCGATGGACAGCT
TCTCGGGGAACATCTCCCCCAGGGTGACGAGAAAGCCGCCATAGCCGCAG
CCTATGTCCGCAAAACTTACCTGCTGGCCCTGCTGAATGCCTGGGTACAT
GGAGCGCCAGTCCACATCTTCCGGGCGAGCAGGATAGTCGAAGCTGTGGT
CCGCAATGGGATTCGAGTGCGCACGCTGGCGGTAGTAGCGCTTTTGTGGC
AACCCCGTCACCGCCGACGTGGGGTTTAGCACATCCGGCTCCTGGTTCTG
GCCCTGATCCTGAGCCTGTCCACCGGTGGCCACCATGTCGACTGATAACT
BO04332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-PA | 771 | CG4045-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 923 | CG4045-RA | 81..848 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2075206..2075618 | 222..634 | 2065 | 100 | Plus |
X | 23542271 | X | 2075669..2075820 | 635..786 | 760 | 100 | Plus |
X | 23542271 | X | 2075038..2075140 | 121..223 | 515 | 100 | Plus |
X | 23542271 | X | 2074870..2074971 | 19..120 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:00:41 has no hits.
BO04332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:10 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:57 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:57 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 72..848 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:26:12 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 72..848 | 19..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:26:12 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2074870..2074971 | 19..120 | 100 | <- | Plus |
X | 2075038..2075139 | 121..222 | 100 | <- | Plus |
X | 2075207..2075618 | 223..634 | 100 | <- | Plus |
X | 2075669..2075828 | 635..798 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:57 Download gff for
BO04332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1968903..1969004 | 19..120 | 100 | <- | Plus |
arm_X | 1969071..1969172 | 121..222 | 100 | <- | Plus |
arm_X | 1969240..1969651 | 223..634 | 100 | <- | Plus |
arm_X | 1969702..1969861 | 635..798 | 96 | | Plus |
BO04332.5prime Sequence
800 bp (799 high quality bases) assembled on 2005-11-29
> BO04332.5prime
GAAGTTATCAGTCGACATGGTGGCCACCGGTGGACAGGCTCAGGATCAGG
GCCAGAACCAGGAGCCGGATGTGCTAAACCCCACGTCGGCGGTGACGGGG
TTGCCACAAAAGCGCTACTACCGCCAGCGTGCGCACTCGAATCCCATTGC
GGACCACAGCTTCGACTATCCTGCTCGCCCGGAAGATGTGGACTGGCGCT
CCATGTACCCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTGCGGACATA
GGCTGCGGCTATGGCGGCTTTCTCGTCACCCTGGGGGAGATGTTCCCCGA
GAAGCTGTCCATCGGCATGGAAATCCGCGTCAAGGTGTCGGACTACGTGG
TGGACCGGATTGCGGCACTGCGTCGACGATGCGCGGATACGGGTGCATAC
CAGAACATTGCCTGCTTACGCACCAACGCCATGAAGTATCTGCCCAACTA
CTTCGTAAAGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCCGGACCCAC
ATTTCAAGCGCGCCAAGCACAAGTGGCGTATTATCAACCAGGCTCTACTC
TCCGAATATGCCTATATCCTCAGGAAGGGGGGTCTGTTGTACACCATGAC
GGACGTTGAGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCATC
CGCTGTACGAGCGTCTTACCGAAGAGGAGGCCAATGCTGATCCCATCACC
CCGAAGCTGTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTTCGAAACAA
GGGCGATCATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTTTCTAGACC
BO04332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-PA | 771 | CG4045-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 923 | CG4045-RA | 81..848 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2075206..2075618 | 581..169 | 2065 | 100 | Minus |
X | 23542271 | X | 2075669..2075820 | 168..17 | 760 | 100 | Minus |
X | 23542271 | X | 2075038..2075140 | 682..580 | 515 | 100 | Minus |
X | 23542271 | X | 2074870..2074971 | 784..683 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:13:52 has no hits.
BO04332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:11 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:59 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:25 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 72..848 | 5..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:07 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 72..848 | 5..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:07 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2074870..2074971 | 683..784 | 100 | <- | Minus |
X | 2075038..2075139 | 581..682 | 100 | <- | Minus |
X | 2075207..2075618 | 169..580 | 100 | <- | Minus |
X | 2075669..2075828 | 5..168 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:25 Download gff for
BO04332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1968903..1969004 | 683..784 | 100 | <- | Minus |
arm_X | 1969071..1969172 | 581..682 | 100 | <- | Minus |
arm_X | 1969240..1969651 | 169..580 | 100 | <- | Minus |
arm_X | 1969702..1969861 | 5..168 | 96 | | Minus |
BO04332.complete Sequence
802 bp (802 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629729
> BO04332.complete
GAAGTTATCAGTCGACATGGTGGCCACCGGTGGACAGGCTCAGGATCAGG
GCCAGAACCAGGAGCCGGATGTGCTAAACCCCACGTCGGCGGTGACGGGG
TTGCCACAAAAGCGCTACTACCGCCAGCGTGCGCACTCGAATCCCATTGC
GGACCACAGCTTCGACTATCCTGCTCGCCCGGAAGATGTGGACTGGCGCT
CCATGTACCCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTGCGGACATA
GGCTGCGGCTATGGCGGCTTTCTCGTCACCCTGGGGGAGATGTTCCCCGA
GAAGCTGTCCATCGGCATGGAAATCCGCGTCAAGGTGTCGGACTACGTGG
TGGACCGGATTGCGGCACTGCGTCGACGATGCGCGGATACGGGTGCATAC
CAGAACATTGCCTGCTTACGCACCAACGCCATGAAGTATCTGCCCAACTA
CTTCGTAAAGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCCGGACCCAC
ATTTCAAGCGCGCCAAGCACAAGTGGCGTATTATCAACCAGGCTCTACTC
TCCGAATATGCCTATATCCTCAGGAAGGGGGGTCTGTTGTACACCATGAC
GGACGTTGAGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCATC
CGCTGTACGAGCGTCTTACCGAAGAGGAGGCCAATGCTGATCCCATCACC
CCGAAGCTGTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTTCGAAACAA
GGGCGATCATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTTTCTAGACC
AT
BO04332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 771 | CG4045-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 923 | CG4045-RA | 81..848 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2075206..2075618 | 581..169 | 2065 | 100 | Minus |
X | 23542271 | X | 2075669..2075820 | 168..17 | 760 | 100 | Minus |
X | 23542271 | X | 2075038..2075140 | 682..580 | 515 | 100 | Minus |
X | 23542271 | X | 2074870..2074971 | 784..683 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:22 has no hits.
BO04332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:06 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:47 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 72..848 | 5..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:30 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 81..848 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:07 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 36..812 | 5..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:17 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 81..848 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:17 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2074868..2074971 | 683..786 | 98 | <- | Minus |
X | 2075038..2075139 | 581..682 | 100 | <- | Minus |
X | 2075207..2075618 | 169..580 | 100 | <- | Minus |
X | 2075669..2075820 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:30 Download gff for
BO04332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1969240..1969651 | 169..580 | 100 | <- | Minus |
arm_X | 1968901..1969004 | 683..786 | 98 | <- | Minus |
arm_X | 1969071..1969172 | 581..682 | 100 | <- | Minus |
arm_X | 1969702..1969853 | 17..168 | 100 | | Minus |
BO04332.pep Sequence
Translation from 16 to 802
> BO04332.pep
MVATGGQAQDQGQNQEPDVLNPTSAVTGLPQKRYYRQRAHSNPIADHSFD
YPARPEDVDWRSMYPGIQQGQQVSFADIGCGYGGFLVTLGEMFPEKLSIG
MEIRVKVSDYVVDRIAALRRRCADTGAYQNIACLRTNAMKYLPNYFVKGQ
LEKMFFLYPDPHFKRAKHKWRIINQALLSEYAYILRKGGLLYTMTDVEDL
HKWIVTHMEEHPLYERLTEEEANADPITPKLYQSSEEGAKVVRNKGDHFL
AIFRRLASFLDH
BO04332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-PA | 256 | CG4045-PA | 1..256 | 1..256 | 1365 | 100 | Plus |