Clone Sequence Records
BO04334.3prime Sequence
683 bp (682 high quality bases) assembled on 2005-12-01
> BO04334.3prime
ATGGTCTAGAAAGCTTGCACGATAGAGATGGTCGGCCTGCAAGTTAGAGG
CAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTTG
TACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCTC
GACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATGC
ACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGCG
CGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGCA
TAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGGG
CATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATAG
TTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATCC
ACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATGT
CGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTTG
GGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCCG
GGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAAA
TTCGCATAGTTAGCGACATGTCGACTGATAACT
BO04334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..739 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 177..630 | 2270 | 100 | Plus |
3R | 32079331 | 3R | 15836128..15836288 | 19..179 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15836989..15837029 | 629..669 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:44:06 has no hits.
BO04334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:14 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:03 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:36 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 8..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:27 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 8..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:27 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836118..15836286 | 8..177 | 97 | <- | Plus |
3R | 15836355..15836806 | 178..629 | 100 | <- | Plus |
3R | 15836990..15837029 | 630..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:36 Download gff for
BO04334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661840..11662008 | 8..177 | 97 | <- | Plus |
arm_3R | 11662077..11662528 | 178..629 | 100 | <- | Plus |
arm_3R | 11662712..11662751 | 630..669 | 100 | | Plus |
BO04334.5prime Sequence
683 bp (682 high quality bases) assembled on 2005-11-29
> BO04334.5prime
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTGCAAGCTTTCTAGACC
BO04334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..739 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 509..56 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 15836128..15836288 | 667..507 | 805 | 100 | Minus |
3R | 32079331 | 3R | 15836989..15837029 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:31:52 has no hits.
BO04334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:15 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:04 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:01 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:07 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:07 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836118..15836286 | 509..678 | 97 | <- | Minus |
3R | 15836355..15836806 | 57..508 | 100 | <- | Minus |
3R | 15836990..15837029 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:01 Download gff for
BO04334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661840..11662008 | 509..678 | 97 | <- | Minus |
arm_3R | 11662077..11662528 | 57..508 | 100 | <- | Minus |
arm_3R | 11662712..11662751 | 17..56 | 100 | | Minus |
BO04334.complete Sequence
685 bp (685 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629730
> BO04334.complete
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTGCAAGCTTTCTAGACCAT
BO04334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 654 | CG3944-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..739 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 509..56 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 15836128..15836288 | 667..507 | 805 | 100 | Minus |
3R | 32079331 | 3R | 15836989..15837029 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:34 has no hits.
BO04334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:03 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:42 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 69..729 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:01 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..739 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:03 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 69..729 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:57 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..739 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:57 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836126..15836286 | 509..669 | 98 | <- | Minus |
3R | 15836355..15836806 | 57..508 | 100 | <- | Minus |
3R | 15836990..15837029 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:01 Download gff for
BO04334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661848..11662008 | 509..669 | 98 | <- | Minus |
arm_3R | 11662077..11662528 | 57..508 | 100 | <- | Minus |
arm_3R | 11662712..11662751 | 17..56 | 100 | | Minus |
BO04334.pep Sequence
Translation from 16 to 685
> BO04334.pep
MSLTMRIFTASRNGQRLFGSHGARLLAAQRAEPKDIVEVPKGYVYVNNKE
LSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSP
RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRY
DIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLCNGD
KWESEIASNLQADHLYRASFLDH
BO04334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-PA | 217 | CG3944-PA | 1..217 | 1..217 | 1150 | 100 | Plus |