Clone BO04334 Report

Search the DGRC for BO04334

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptND23-RA
Protein status:BO04334.pep: validated full length
Sequenced Size:685

Clone Sequence Records

BO04334.3prime Sequence

683 bp (682 high quality bases) assembled on 2005-12-01

> BO04334.3prime
ATGGTCTAGAAAGCTTGCACGATAGAGATGGTCGGCCTGCAAGTTAGAGG
CAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTTG
TACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCTC
GACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATGC
ACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGCG
CGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGCA
TAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGGG
CATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATAG
TTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATCC
ACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATGT
CGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTTG
GGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCCG
GGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAAA
TTCGCATAGTTAGCGACATGTCGACTGATAACT

BO04334.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..739 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 177..630 2270 100 Plus
3R 32079331 3R 15836128..15836288 19..179 805 100 Plus
3R 32079331 3R 15836989..15837029 629..669 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:44:06 has no hits.

BO04334.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:14 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:03 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:36 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 8..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:27 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 8..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:27 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836118..15836286 8..177 97 <- Plus
3R 15836355..15836806 178..629 100 <- Plus
3R 15836990..15837029 630..669 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:36 Download gff for BO04334.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661840..11662008 8..177 97 <- Plus
arm_3R 11662077..11662528 178..629 100 <- Plus
arm_3R 11662712..11662751 630..669 100   Plus

BO04334.5prime Sequence

683 bp (682 high quality bases) assembled on 2005-11-29

> BO04334.5prime
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTGCAAGCTTTCTAGACC

BO04334.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..739 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 509..56 2270 100 Minus
3R 32079331 3R 15836128..15836288 667..507 805 100 Minus
3R 32079331 3R 15836989..15837029 57..17 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:31:52 has no hits.

BO04334.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:15 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:04 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:01 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:07 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:07 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836118..15836286 509..678 97 <- Minus
3R 15836355..15836806 57..508 100 <- Minus
3R 15836990..15837029 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:01 Download gff for BO04334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661840..11662008 509..678 97 <- Minus
arm_3R 11662077..11662528 57..508 100 <- Minus
arm_3R 11662712..11662751 17..56 100   Minus

BO04334.complete Sequence

685 bp (685 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629730

> BO04334.complete
GAAGTTATCAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGC
GCAACGGACAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCC
CAGCGAGCAGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTA
TGTAAACAACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTG
CTGCATCCACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACC
CTGGCGCACATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAA
GGGACCACTGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATC
CCAGTGGAGAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGC
CCCGCACAGGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAG
ACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGAT
TCTGTCAGGAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTC
GAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCT
TCTCTGCAACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGG
CCGACCATCTCTATCGTGCAAGCTTTCTAGACCAT

BO04334.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 654 CG3944-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..739 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 509..56 2270 100 Minus
3R 32079331 3R 15836128..15836288 667..507 805 100 Minus
3R 32079331 3R 15836989..15837029 57..17 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:42:34 has no hits.

BO04334.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:03 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:42 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 69..729 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:01 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..739 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:03 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 69..729 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:57 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..739 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:57 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15836126..15836286 509..669 98 <- Minus
3R 15836355..15836806 57..508 100 <- Minus
3R 15836990..15837029 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:01 Download gff for BO04334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661848..11662008 509..669 98 <- Minus
arm_3R 11662077..11662528 57..508 100 <- Minus
arm_3R 11662712..11662751 17..56 100   Minus

BO04334.pep Sequence

Translation from 16 to 685

> BO04334.pep
MSLTMRIFTASRNGQRLFGSHGARLLAAQRAEPKDIVEVPKGYVYVNNKE
LSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSP
RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRY
DIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLCNGD
KWESEIASNLQADHLYRASFLDH

BO04334.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-PA 217 CG3944-PA 1..217 1..217 1150 100 Plus