Clone Sequence Records
BO04336.5prime Sequence
689 bp (688 high quality bases) assembled on 2005-11-29
> BO04336.5prime
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCGCAAGCTTTCTAGACC
BO04336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6948-PA | 660 | Clc-RA | 1..657 | 17..673 | 3260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clc-RD | 1073 | CG6948-RD | 135..792 | 16..673 | 3275 | 99.8 | Plus |
Clc-RC | 1230 | CG6948-RC | 292..949 | 16..673 | 3275 | 99.8 | Plus |
Clc-RB | 1005 | CG6948-RB | 67..724 | 16..673 | 3275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20242797..20243454 | 16..673 | 3275 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:02:41 has no hits.
BO04336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:18 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:10 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6948-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:41 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 61..724 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:48 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 61..724 | 9..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:48 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20242791..20243454 | 9..673 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:41 Download gff for
BO04336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20235891..20236554 | 9..673 | 99 | | Plus |
BO04336.3prime Sequence
689 bp (688 high quality bases) assembled on 2005-12-01
> BO04336.3prime
ATGGTCTAGAAAGCTTGCGGTGCTCTTCTGCACCTGGATGGGATTCTGCT
TGAGGTGCAGGTAGATGGATCGCATGCGGGAGACGTCCTTTCCCGCCTTG
TTCACCTTGGGATTGAAGTCGCAGAGCTTGGCTATGCGCTCCCATTCGGT
GCCCGGCTCGATGGTGCCATTCTCCAGGGTGGCGGCTTGTTTCTCGGCAT
TCCGCGACGCCAGTTTGGTCTTCGATATGGACTCGCCAATCTGGCGCAAC
CAGTCGTCCAGCTCCTTCTTGGACTGCTGTCGGAGTTCCTCCTTTTTTCG
CTCCTCCTCGATGTCCTTCTCCTCCAGTCGTTGCTTTTGCTCTTCGCGCC
ATTTGCGTATCTTTTCGGGCTCTTCCCGCGACGGCGGCGGACCGGATATG
CCCACGGGTTCATTGGACTCGCCACCAATGACCTCAAAACTGCCAGTGGA
GGATTCGAGGCCACCCGTGCCGCCAGCAGAGAGCAAATCGCCTTCGGAGG
CGGTGCCTCCCAGAAGCTCACCCAAGCCCTCGTCTGTGGATGCAGCCGGA
GGAGCTGATGCAGATCCACCCGTAATCTCCGCCTCCAAGTCCCCGAGAGC
TGACTGTTCGCGCGCCAGGAACTCGGCCGCCGGATCCACGTCCTCCTTGG
CAGCGAAATCGTCTCCGAAGTCCATGTCGACTGATAACT
BO04336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6948-PA | 660 | Clc-RA | 1..657 | 675..19 | 3260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clc-RD | 1073 | CG6948-RD | 135..792 | 676..19 | 3275 | 99.8 | Minus |
Clc-RC | 1230 | CG6948-RC | 292..949 | 676..19 | 3275 | 99.8 | Minus |
Clc-RB | 1005 | CG6948-RB | 67..724 | 676..19 | 3275 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20242797..20243454 | 676..19 | 3275 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:15 has no hits.
BO04336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:17 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:09 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6948-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:11 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 61..724 | 19..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:52 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 61..724 | 19..683 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:52 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20242791..20243454 | 19..683 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:11 Download gff for
BO04336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20235891..20236554 | 19..683 | 99 | | Minus |
BO04336.complete Sequence
691 bp (691 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629731
> BO04336.complete
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCGCAAGCTTTCTAGACCAT
BO04336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clc-RD | 660 | CG6948-PD | 1..657 | 17..673 | 3270 | 99.8 | Plus |
Clc-RC | 660 | CG6948-PC | 1..657 | 17..673 | 3270 | 99.8 | Plus |
Clc-RB | 660 | CG6948-PB | 1..657 | 17..673 | 3270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clc-RD | 1073 | CG6948-RD | 135..792 | 16..673 | 3275 | 99.8 | Plus |
Clc-RC | 1230 | CG6948-RC | 292..949 | 16..673 | 3275 | 99.8 | Plus |
Clc-RB | 1005 | CG6948-RB | 67..724 | 16..673 | 3275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20242797..20243454 | 16..673 | 3275 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:50:10 has no hits.
BO04336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:16 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:54 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RA | 185..848 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:27 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 68..724 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:16 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RA | 185..848 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:52 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clc-RB | 68..724 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:52 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20242798..20243454 | 17..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:27 Download gff for
BO04336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20235898..20236554 | 17..675 | 99 | | Plus |
BO04336.pep Sequence
Translation from 16 to 691
> BO04336.pep
MDFGDDFAAKEDVDPAAEFLAREQSALGDLEAEITGGSASAPPAASTDEG
LGELLGGTASEGDLLSAGGTGGLESSTGSFEVIGGESNEPVGISGPPPSR
EEPEKIRKWREEQKQRLEEKDIEEERKKEELRQQSKKELDDWLRQIGESI
SKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSR
MRSIYLHLKQNPIQVQKSTASFLDH
BO04336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clc-PD | 219 | CG6948-PD | 1..219 | 1..219 | 1117 | 100 | Plus |
Clc-PC | 219 | CG6948-PC | 1..219 | 1..219 | 1117 | 100 | Plus |
Clc-PB | 219 | CG6948-PB | 1..219 | 1..219 | 1117 | 100 | Plus |
Clc-PA | 219 | CG6948-PA | 1..219 | 1..219 | 1117 | 100 | Plus |