Clone BO04336 Report

Search the DGRC for BO04336

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptClc-RA
Protein status:BO04336.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO04336.5prime Sequence

689 bp (688 high quality bases) assembled on 2005-11-29

> BO04336.5prime
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCGCAAGCTTTCTAGACC

BO04336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6948-PA 660 Clc-RA 1..657 17..673 3260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-RD 1073 CG6948-RD 135..792 16..673 3275 99.8 Plus
Clc-RC 1230 CG6948-RC 292..949 16..673 3275 99.8 Plus
Clc-RB 1005 CG6948-RB 67..724 16..673 3275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20242797..20243454 16..673 3275 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 16:02:41 has no hits.

BO04336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:18 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
Clc-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:10 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6948-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:41 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 9..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:48 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 9..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:48 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20242791..20243454 9..673 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:41 Download gff for BO04336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20235891..20236554 9..673 99   Plus

BO04336.3prime Sequence

689 bp (688 high quality bases) assembled on 2005-12-01

> BO04336.3prime
ATGGTCTAGAAAGCTTGCGGTGCTCTTCTGCACCTGGATGGGATTCTGCT
TGAGGTGCAGGTAGATGGATCGCATGCGGGAGACGTCCTTTCCCGCCTTG
TTCACCTTGGGATTGAAGTCGCAGAGCTTGGCTATGCGCTCCCATTCGGT
GCCCGGCTCGATGGTGCCATTCTCCAGGGTGGCGGCTTGTTTCTCGGCAT
TCCGCGACGCCAGTTTGGTCTTCGATATGGACTCGCCAATCTGGCGCAAC
CAGTCGTCCAGCTCCTTCTTGGACTGCTGTCGGAGTTCCTCCTTTTTTCG
CTCCTCCTCGATGTCCTTCTCCTCCAGTCGTTGCTTTTGCTCTTCGCGCC
ATTTGCGTATCTTTTCGGGCTCTTCCCGCGACGGCGGCGGACCGGATATG
CCCACGGGTTCATTGGACTCGCCACCAATGACCTCAAAACTGCCAGTGGA
GGATTCGAGGCCACCCGTGCCGCCAGCAGAGAGCAAATCGCCTTCGGAGG
CGGTGCCTCCCAGAAGCTCACCCAAGCCCTCGTCTGTGGATGCAGCCGGA
GGAGCTGATGCAGATCCACCCGTAATCTCCGCCTCCAAGTCCCCGAGAGC
TGACTGTTCGCGCGCCAGGAACTCGGCCGCCGGATCCACGTCCTCCTTGG
CAGCGAAATCGTCTCCGAAGTCCATGTCGACTGATAACT

BO04336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6948-PA 660 Clc-RA 1..657 675..19 3260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-RD 1073 CG6948-RD 135..792 676..19 3275 99.8 Minus
Clc-RC 1230 CG6948-RC 292..949 676..19 3275 99.8 Minus
Clc-RB 1005 CG6948-RB 67..724 676..19 3275 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20242797..20243454 676..19 3275 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 06:20:15 has no hits.

BO04336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:17 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
Clc-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:09 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6948-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:11 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 19..683 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:52 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 19..683 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:52 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20242791..20243454 19..683 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:11 Download gff for BO04336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20235891..20236554 19..683 99   Minus

BO04336.complete Sequence

691 bp (691 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629731

> BO04336.complete
GAAGTTATCAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGG
ACGTGGATCCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGG
GACTTGGAGGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGC
ATCCACAGACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAG
GCGATTTGCTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGC
AGTTTTGAGGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGG
TCCGCCGCCGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAG
AGCAAAAGCAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAG
GAGGAACTCCGACAGCAGTCCAAGAAGGAGCTGGACGACTGGTTGCGCCA
GATTGGCGAGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGA
AACAAGCCGCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGG
GAGCGCATAGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGG
AAAGGACGTCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATC
CCATCCAGGTGCAGAAGAGCACCGCAAGCTTTCTAGACCAT

BO04336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-RD 660 CG6948-PD 1..657 17..673 3270 99.8 Plus
Clc-RC 660 CG6948-PC 1..657 17..673 3270 99.8 Plus
Clc-RB 660 CG6948-PB 1..657 17..673 3270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-RD 1073 CG6948-RD 135..792 16..673 3275 99.8 Plus
Clc-RC 1230 CG6948-RC 292..949 16..673 3275 99.8 Plus
Clc-RB 1005 CG6948-RB 67..724 16..673 3275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20242797..20243454 16..673 3275 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 00:50:10 has no hits.

BO04336.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:16 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
Clc-RA 1..660 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:54 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
Clc-RA 185..848 9..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:27 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 68..724 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:16 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
Clc-RA 185..848 9..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:52 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 68..724 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:52 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20242798..20243454 17..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:27 Download gff for BO04336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20235898..20236554 17..675 99   Plus

BO04336.pep Sequence

Translation from 16 to 691

> BO04336.pep
MDFGDDFAAKEDVDPAAEFLAREQSALGDLEAEITGGSASAPPAASTDEG
LGELLGGTASEGDLLSAGGTGGLESSTGSFEVIGGESNEPVGISGPPPSR
EEPEKIRKWREEQKQRLEEKDIEEERKKEELRQQSKKELDDWLRQIGESI
SKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSR
MRSIYLHLKQNPIQVQKSTASFLDH

BO04336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-PD 219 CG6948-PD 1..219 1..219 1117 100 Plus
Clc-PC 219 CG6948-PC 1..219 1..219 1117 100 Plus
Clc-PB 219 CG6948-PB 1..219 1..219 1117 100 Plus
Clc-PA 219 CG6948-PA 1..219 1..219 1117 100 Plus