Clone Sequence Records
BO04340.3prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-01
> BO04340.3prime
ATGGTCTAGAAAGCTTGCCACTCCTCCCCTAGCCCCATCCTCCTCCTCCA
CCTCTTGCAGTTGGTCCTGCTCCTCCGGCTGGGTATCAACGGTATCGTTG
GTGTCCGCATTCAGGTCCACCCAGTTGTCATCGCTGATTTCGTCAATGGT
ATCCGTGTCATCCACTACGGCCGCCACGCTCACGTCATCCGTGGAGCCGG
AATTAGTGGTGCCAGTGGTTGTGGTGGCCGTGACGGCGGACGAGGGTCTC
AGTATCTCCTCCTGAGTGGCCGGAGTCGGGGTCGTCGACGTGGTGTACGA
TGCGGAGGAGGGTGTCTCCGAACGGTAGCCCATTCCCGTAATGTACGACC
CGGACCCAGAACCCGAGCCCGATCCAGACCCTGATCCGGATCCCGATGCG
GTTTCCGTGGCCGTTTCCGTGTTGGAACTGCAACTTGCCGTTGTTCCCGA
AGTGGAGGCGTCGTCTCCGGGGAGGGCGTCCTGAGAAAGCCTAGGTCGCG
GGGCGCCCTTTAACTTGTTCTTTTGGCGGGCAACCTCATAGTCCTTGAGA
TCGGACAGCTTGAGTGTGATTTTCTGCAGATCGCGCTTCAGCATGTCGAC
TGATAACT
BO04340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PA | 579 | CG3457-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..653 | 599..19 | 2890 | 99.8 | Minus |
| CG3457-RA | 891 | CG3457-RA | 73..653 | 599..19 | 2890 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188472 | 599..19 | 2890 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:32:06 has no hits.
BO04340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:25 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:19 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:04 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..656 | 15..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:13 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..656 | 15..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:13 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187892..2188475 | 15..599 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:04 Download gff for
BO04340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081925..2082508 | 15..599 | 99 | | Minus |
BO04340.5prime Sequence
608 bp (607 high quality bases) assembled on 2005-11-29
> BO04340.5prime
GAAGTTATCAGTCGACATGCTGAAGCGCGATCTGCAGAAAATCACACTCA
AGCTGTCCGATCTCAAGGACTATGAGGTTGCCCGCCAAAAGAACAAGTTA
AAGGGCGCCCCGCGACCTAGGCTTTCTCAGGACGCCCTCCCCGGAGACGA
CGCCTCCACTTCGGGAACAACGGCAAGTTGCAGTTCCAACACGGAAACGG
CCACGGAAACCGCATCGGGATCCGGATCAGGGTCTGGATCGGGCTCGGGT
TCTGGGTCCGGGTCGTACATTACGGGAATGGGCTACCGTTCGGAGACACC
CTCCTCCGCATCGTACACCACGTCGACGACCCCGACTCCGGCCACTCAGG
AGGAGATACTGAGACCCTCGTCCGCCGTCACGGCCACCACAACCACTGGC
ACCACTAATTCCGGCTCCACGGATGACGTGAGCGTGGCGGCCGTAGTGGA
TGACACGGATACCATTGACGAAATCAGCGATGACAACTGGGTGGACCTGA
ATGCGGACACCAACGATACCGTTGATACCCAGCCGGAGGAGCAGGACCAA
CTGCAAGAGGTGGAGGAGGAGGATGGGGCTAGGGGAGGAGTGGCAAGCTT
TCTAGACC
BO04340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PA | 579 | CG3457-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..653 | 12..592 | 2890 | 99.8 | Plus |
| CG3457-RA | 891 | CG3457-RA | 73..653 | 12..592 | 2890 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188472 | 12..592 | 2890 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:58:58 has no hits.
BO04340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:26 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:21 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:24 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..656 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:03 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 73..656 | 12..596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:03 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187892..2188475 | 12..596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:24 Download gff for
BO04340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081925..2082508 | 12..596 | 99 | | Plus |
BO04340.complete Sequence
610 bp (610 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629732
> BO04340.complete
GAAGTTATCAGTCGACATGCTGAAGCGCGATCTGCAGAAAATCACACTCA
AGCTGTCCGATCTCAAGGACTATGAGGTTGCCCGCCAAAAGAACAAGTTA
AAGGGCGCCCCGCGACCTAGGCTTTCTCAGGACGCCCTCCCCGGAGACGA
CGCCTCCACTTCGGGAACAACGGCAAGTTGCAGTTCCAACACGGAAACGG
CCACGGAAACCGCATCGGGATCCGGATCAGGGTCTGGATCGGGCTCGGGT
TCTGGGTCCGGGTCGTACATTACGGGAATGGGCTACCGTTCGGAGACACC
CTCCTCCGCATCGTACACCACGTCGACGACCCCGACTCCGGCCACTCAGG
AGGAGATACTGAGACCCTCGTCCGCCGTCACGGCCACCACAACCACTGGC
ACCACTAATTCCGGCTCCACGGATGACGTGAGCGTGGCGGCCGTAGTGGA
TGACACGGATACCATTGACGAAATCAGCGATGACAACTGGGTGGACCTGA
ATGCGGACACCAACGATACCGTTGATACCCAGCCGGAGGAGCAGGACCAA
CTGCAAGAGGTGGAGGAGGAGGATGGGGCTAGGGGAGGAGTGGCAAGCTT
TCTAGACCAT
BO04340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 579 | CG3457-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
| CG3457-RA | 579 | CG3457-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-RB | 1100 | CG3457-RB | 73..653 | 12..592 | 2890 | 99.8 | Plus |
| CG3457-RA | 891 | CG3457-RA | 73..653 | 12..592 | 2890 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2187892..2188472 | 12..592 | 2890 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:05:43 has no hits.
BO04340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:18 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:57 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 71..654 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:27 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 78..653 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:18 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 71..654 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:08 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3457-RA | 78..653 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:08 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2187897..2188472 | 17..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:27 Download gff for
BO04340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2081930..2082505 | 17..594 | 99 | | Plus |
BO04340.pep Sequence
Translation from 16 to 610
> BO04340.pep
MLKRDLQKITLKLSDLKDYEVARQKNKLKGAPRPRLSQDALPGDDASTSG
TTASCSSNTETATETASGSGSGSGSGSGSGSGSYITGMGYRSETPSSASY
TTSTTPTPATQEEILRPSSAVTATTTTGTTNSGSTDDVSVAAVVDDTDTI
DEISDDNWVDLNADTNDTVDTQPEEQDQLQEVEEEDGARGGVASFLDH
BO04340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3457-PB | 192 | CG3457-PB | 1..192 | 1..192 | 970 | 100 | Plus |
| CG3457-PA | 192 | CG3457-PA | 1..192 | 1..192 | 970 | 100 | Plus |
