Clone Sequence Records
BO04343.3prime Sequence
641 bp (640 high quality bases) assembled on 2005-12-01
> BO04343.3prime
ATGGTCTAGAAAGCTTGCGTGACCCGCGGTGGCGGCCTTGGCAGCGATCT
CGTCCTCCTTAGCATGCAGGGCGATGAGCTCCTGCTTCTTGGTGGCAATA
CGCTCCTCGCGGCGCTTGCGGGCCTCACGCACCTTCTGTCGGCGAGCCTC
GGCCTGATCAGCCAGCATCTTGCTGCGCTGCTTCTCAGCCTTCTTCTTGT
GGATGTACTCCATGAGGACGCGCTTGTTCTTGAATACGTTACCCTTGCAC
TTCATGTACAGGTCGTGGTACAGGTGCCTGTCAATCTTCTTGCTGTCGCG
GTACTTCTTCAACAGGCGGCGCAGAACGCGCTGGCGCTGCATCCACAGCA
GCTTGGTAGGCATGCGGGCGTTCGCAGTACCCTTACGCTTTCCGAATCCG
CAGTGACGTCCCTTGCGGCGGGCCTCGGTGTTTTTGCGCACACGGTAACG
GGAGTGGACCACGACGGGCTTCTTGATGATCAGACCATCCTTGATAAGCT
TGCGAATGTTCTGACGCGAGTTTGTGTTAGCGATCTCGTTGATTTCATTG
GGATCCAACCAGACCTTCTTCTTGCCGCATCGCAGCACGGAGGCTGCGAG
CCTCTTCTGGAGCTTTAGAGAACTCATGTCGACTGATAACT
BO04343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2746-PA | 612 | RpL19-RA | 1..609 | 627..19 | 3045 | 100 | Minus |
| CG2746-PB | 612 | RpL19-RB | 1..609 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 628..19 | 3050 | 100 | Minus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 628..19 | 3050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 19..515 | 2485 | 100 | Plus |
| 2R | 25286936 | 2R | 24969116..24969226 | 514..624 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:01:32 has no hits.
BO04343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:29 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:24 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2746-PB | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:02 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 9..636 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:04 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 9..636 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:04 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 9..515 | 99 | <- | Plus |
| 2R | 24969118..24969224 | 516..622 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:02 Download gff for
BO04343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 9..515 | 99 | <- | Plus |
| arm_2R | 20856641..20856747 | 516..622 | 100 | <- | Plus |
BO04343.5prime Sequence
641 bp (640 high quality bases) assembled on 2005-11-29
> BO04343.5prime
GAAGTTATCAGTCGACATGAGTTCTCTAAAGCTCCAGAAGAGGCTCGCAG
CCTCCGTGCTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCCCAATGAA
ATCAACGAGATCGCTAACACAAACTCGCGTCAGAACATTCGCAAGCTTAT
CAAGGATGGTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCCCGTTACC
GTGTGCGCAAAAACACCGAGGCCCGCCGCAAGGGACGTCACTGCGGATTC
GGAAAGCGTAAGGGTACTGCGAACGCCCGCATGCCTACCAAGCTGCTGTG
GATGCAGCGCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTACCGCGACA
GCAAGAAGATTGACAGGCACCTGTACCACGACCTGTACATGAAGTGCAAG
GGTAACGTATTCAAGAACAAGCGCGTCCTCATGGAGTACATCCACAAGAA
GAAGGCTGAGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCCGAGGCTC
GCCGACAGAAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCGTATTGCC
ACCAAGAAGCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACGAGATCGC
TGCCAAGGCCGCCACCGCGGGTCACGCAAGCTTTCTAGACC
BO04343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2746-PA | 612 | RpL19-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
| CG2746-PB | 612 | RpL19-RB | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 16..625 | 3050 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 625..129 | 2485 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 130..20 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:02:46 has no hits.
BO04343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:00:30 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:26 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2746-PB | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:43 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 8..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:57 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 8..635 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:57 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 129..635 | 99 | <- | Minus |
| 2R | 24969118..24969224 | 22..128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:43 Download gff for
BO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 129..635 | 99 | <- | Minus |
| arm_2R | 20856641..20856747 | 22..128 | 100 | <- | Minus |
BO04343.complete Sequence
643 bp (643 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629733
> BO04343.complete
GAAGTTATCAGTCGACATGAGTTCTCTAAAGCTCCAGAAGAGGCTCGCAG
CCTCCGTGCTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCCCAATGAA
ATCAACGAGATCGCTAACACAAACTCGCGTCAGAACATTCGCAAGCTTAT
CAAGGATGGTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCCCGTTACC
GTGTGCGCAAAAACACCGAGGCCCGCCGCAAGGGACGTCACTGCGGATTC
GGAAAGCGTAAGGGTACTGCGAACGCCCGCATGCCTACCAAGCTGCTGTG
GATGCAGCGCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTACCGCGACA
GCAAGAAGATTGACAGGCACCTGTACCACGACCTGTACATGAAGTGCAAG
GGTAACGTATTCAAGAACAAGCGCGTCCTCATGGAGTACATCCACAAGAA
GAAGGCTGAGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCCGAGGCTC
GCCGACAGAAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCGTATTGCC
ACCAAGAAGCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACGAGATCGC
TGCCAAGGCCGCCACCGCGGGTCACGCAAGCTTTCTAGACCAT
BO04343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 612 | CG2746-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
| RpL19-RA | 612 | CG2746-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 16..625 | 3050 | 100 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 625..129 | 2485 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 130..20 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:35 has no hits.
BO04343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:19 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:59 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 25..650 | 8..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:29 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 75..683 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:19 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RB | 25..650 | 8..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:17 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 75..683 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:17 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24969118..24969229 | 17..128 | 98 | | Minus |
| 2R | 24968553..24969051 | 129..627 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:29 Download gff for
BO04343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856076..20856574 | 129..627 | 99 | <- | Minus |
| arm_2R | 20856641..20856752 | 17..128 | 98 | | Minus |
BO04343.pep Sequence
Translation from 16 to 643
> BO04343.pep
MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLI
IKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQR
VLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQ
RSKMLADQAEARRQKVREARKRREERIATKKQELIALHAKEDEIAAKAAT
AGHASFLDH
BO04343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-PB | 203 | CG2746-PB | 1..203 | 1..203 | 1037 | 100 | Plus |
| RpL19-PA | 203 | CG2746-PA | 1..203 | 1..203 | 1037 | 100 | Plus |
