Clone BO04364 Report

Search the DGRC for BO04364

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptogre-RA
Protein status:BO04364.pep: validated full length
Sequenced Size:1120

Clone Sequence Records

BO04364.3prime Sequence

903 bp (751 high quality bases) assembled on 2005-12-01

> BO04364.3prime
ATGGTCTAGAAAGCTTGCCTTGGCACGGTCGTGCTTGGAGGGCTCCACCT
GCTTGGCAAACTCGCTCATCACGTCCTTGTAGATGACCGGATCAAGATTG
CGACCCAGCATATAGATTAGCCACCAGTCACCGATGTCCAGTTTGCGGGA
CAGCGAGCGACAGATCTCCATCGGAATCATGCGATTGCTGGCGTTCAGGA
GGCGGGGTCGGAATTTCGGCATAAAGATAATGCAGCCACGGAACACTATC
AGTCCGATGAGCAGGACGAGCAGGATCCAGAACCAGAACCAGATGAACAC
GTACGTCTTCTCGTTCACAATGTTCAGCGGCAGGATGCAGAGTGAGTCGT
GCTTCTGCAGCGAACCAGAGGGACCATACTTGTGGAAGGTGCACTTGGTC
ACCCGGGGGAACACATAGACCATGGGATCCACCCTTTGCTCCTGCGGCAC
ATCCGAAAGCTTCATGATATTCGTACCGTACGAGAGGAACTCGCCATCGA
AAAAGCGATTCATCAGATACATCTGCACGATAATGTTGATGCAGCAGAGA
AATTCGCAGGCCCAGTACCGAATGGCGTACAGCTTGTGGCGCTTCACGTG
CTTGATCAGATAGTCCAGCAGGGCATCGCGTTTGGCCTCCTTCTCCTCGC
GGGTGCAGATCGTGATATTCAGACCCATCACAATCATGCGCATCAGTCCG
CCCTCGAATTTATTCCACAGGAATTTGGGCGTATAACAGGCCATGGCCTG
GAAGAAAAGCACGAAGCACACCCACTGGTAGTAGGTGTAGTACTTCTTGG
CATCCTCGTCGCCAAAATCATTGGCCACACCGGGATGAGCCACCTCTCGG
CCAACCTGTCTGCGAAAAGCGTCCGGCATGGTGAAAGTGCTGTGGATCCA
GCA

BO04364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3039-PA 1089 ogre-RA 202..1086 903..19 4425 100 Minus
CG3039-PB 1089 ogre-RB 202..1086 903..19 4425 100 Minus
CG4590-PA 1104 inx2-RA 322..362 783..743 155 95.1 Minus
CG4590-PB 1104 inx2-RB 322..362 783..743 155 95.1 Minus
CG7537-PB 1260 inx5-RB 928..959 339..308 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-RF 3068 CG3039-RF 1785..2669 903..19 4425 100 Minus
ogre-RE 1689 CG3039-RE 406..1290 903..19 4425 100 Minus
ogre-RD 2794 CG3039-RD 1511..2395 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6974731..6975085 239..593 1775 100 Plus
X 23542271 X 6974433..6974653 19..239 1105 100 Plus
X 23542271 X 6975151..6975308 592..749 790 100 Plus
X 23542271 X 6976022..6976133 747..858 560 100 Plus
X 23542271 X 6977157..6977206 854..903 250 100 Plus
X 23542271 X 6999830..6999953 403..280 215 78.2 Minus
X 23542271 X 6999437..6999490 796..743 195 90.7 Minus
3R 32079331 3R 28854962..28855064 306..408 185 78.6 Plus
Blast to na_te.dros performed on 2015-02-04 19:22:16 has no hits.

BO04364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:06 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
ogre-PB 203..1089 18..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:23 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3039-PB 203..1089 18..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:33 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1512..2395 19..902 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:30 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1512..2395 19..902 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:30 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6975151..6975306 592..747 100 <- Plus
X 6976023..6976130 748..855 100 <- Plus
X 6977159..6977205 856..902 100   Plus
X 6974433..6974652 19..238 100 <- Plus
X 6974731..6975083 239..591 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:33 Download gff for BO04364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6869184..6869339 592..747 100 <- Plus
arm_X 6870056..6870163 748..855 100 <- Plus
arm_X 6871192..6871238 856..902 100   Plus
arm_X 6868466..6868685 19..238 100 <- Plus
arm_X 6868764..6869116 239..591 100 <- Plus

BO04364.5prime Sequence

871 bp (763 high quality bases) assembled on 2005-11-29

> BO04364.5prime
GAAGTTATCAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACC
TCAAGTGGCAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAAC
TCCTTTACCACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCAC
CCAGTACGTGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGC
ACGTGGTCAACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGAC
GCTTTTCGCAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAA
TGATTTTGGCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGG
TGTGCTTCGTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTC
CTGTGGAATAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCT
GAATATCACGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCC
TGCTGGACTATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATT
CGGTACTGGGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGAT
GTATCTGATGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGA
ATATCATGAAGCTTTCGGATGTGCCGCAGGAGCAAAGGGTGGATCCCATG
GTCTATGTGTTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCC
CTCTGGTTCGCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACA
TTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTG
CTCGTCCTGCTCATCGGACTG

BO04364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3039-PA 1089 ogre-RA 1..855 17..871 4275 100 Plus
CG3039-PB 1089 ogre-RB 1..855 17..871 4275 100 Plus
CG4590-PA 1104 inx2-RA 322..362 338..378 155 95.1 Plus
CG4590-PB 1104 inx2-RB 322..362 338..378 155 95.1 Plus
CG7537-PB 1260 inx5-RB 928..959 782..813 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-RF 3068 CG3039-RF 1584..2438 17..871 4275 100 Plus
ogre-RE 1689 CG3039-RE 205..1059 17..871 4275 100 Plus
ogre-RD 2794 CG3039-RD 1310..2164 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6974742..6975085 871..528 1720 100 Minus
X 23542271 X 6977157..6977407 267..17 1255 100 Minus
X 23542271 X 6975151..6975308 529..372 790 100 Minus
X 23542271 X 6976022..6976133 374..263 560 100 Minus
X 23542271 X 6999830..6999953 718..841 215 78.2 Plus
X 23542271 X 6999437..6999490 325..378 195 90.7 Plus
3R 32079331 3R 28854962..28855064 815..713 185 78.6 Minus
Blast to na_te.dros performed on 2015-02-13 02:01:52 has no hits.

BO04364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:07 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
ogre-PB 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:24 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3039-PB 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:04 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2164 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:14 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2164 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:14 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6974742..6975083 530..871 100 <- Minus
X 6975151..6975306 374..529 100 <- Minus
X 6976023..6976130 266..373 100 <- Minus
X 6977159..6977407 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:04 Download gff for BO04364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6868775..6869116 530..871 100 <- Minus
arm_X 6869184..6869339 374..529 100 <- Minus
arm_X 6870056..6870163 266..373 100 <- Minus
arm_X 6871192..6871440 17..265 100   Minus

BO04364.complete Sequence

1120 bp (1120 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629735

> BO04364.complete
GAAGTTATCAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACC
TCAAGTGGCAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAAC
TCCTTTACCACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCAC
CCAGTACGTGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGC
ACGTGGTCAACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGAC
GCTTTTCGCAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAA
TGATTTTGGCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGG
TGTGCTTCGTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTC
CTGTGGAATAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCT
GAATATCACGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCC
TGCTGGACTATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATT
CGGTACTGGGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGAT
GTATCTGATGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGA
ATATCATGAAGCTTTCGGATGTGCCGCAGGAGCAAAGGGTGGATCCCATG
GTCTATGTGTTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCC
CTCTGGTTCGCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACA
TTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTG
CTCGTCCTGCTCATCGGACTGATAGTGTTCCGTGGCTGCATTATCTTTAT
GCCGAAATTCCGACCCCGCCTCCTGAACGCCAGCAATCGCATGATTCCGA
TGGAGATCTGTCGCTCGCTGTCCCGCAAACTGGACATCGGTGACTGGTGG
CTAATCTATATGCTGGGTCGCAATCTTGATCCGGTCATCTACAAGGACGT
GATGAGCGAGTTTGCCAAGCAGGTGGAGCCCTCCAAGCACGACCGTGCCA
AGGCAAGCTTTCTAGACCAT

BO04364.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-RF 1089 CG3039-PF 1..1086 17..1102 5430 100 Plus
ogre-RE 1089 CG3039-PE 1..1086 17..1102 5430 100 Plus
ogre-RD 1089 CG3039-PD 1..1086 17..1102 5430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-RF 3068 CG3039-RF 1584..2669 17..1102 5430 100 Plus
ogre-RE 1689 CG3039-RE 205..1290 17..1102 5430 100 Plus
ogre-RD 2794 CG3039-RD 1310..2395 17..1102 5430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6974731..6975085 882..528 1775 100 Minus
X 23542271 X 6977157..6977407 267..17 1255 100 Minus
X 23542271 X 6974433..6974653 1102..882 1105 100 Minus
X 23542271 X 6975151..6975308 529..372 790 100 Minus
X 23542271 X 6976022..6976133 374..263 560 100 Minus
X 23542271 X 6999830..6999953 718..841 215 78.2 Plus
X 23542271 X 6999437..6999490 325..378 195 90.7 Plus
3R 32079331 3R 28854962..28855064 815..713 185 78.6 Minus
Blast to na_te.dros performed on 2014-11-27 08:09:30 has no hits.

BO04364.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:08 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
ogre-RB 1..1089 17..1103 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:42 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
ogre-RB 318..1403 17..1102 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:23 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2395 17..1104 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:08 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
ogre-RB 318..1403 17..1102 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:09 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2395 17..1104 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:09 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
X 6974431..6974652 883..1104 99 <- Minus
X 6974731..6975083 530..882 100 <- Minus
X 6975151..6975306 374..529 100 <- Minus
X 6976023..6976130 266..373 100 <- Minus
X 6977159..6977407 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:23 Download gff for BO04364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6871192..6871440 17..265 100   Minus
arm_X 6868464..6868685 883..1104 99 <- Minus
arm_X 6868764..6869116 530..882 100 <- Minus
arm_X 6869184..6869339 374..529 100 <- Minus
arm_X 6870056..6870163 266..373 100 <- Minus

BO04364.pep Sequence

Translation from 16 to 1120

> BO04364.pep
MYKLLGSLKSYLKWQDIQTDNAVFRLHNSFTTVLLLTCSLIITATQYVGQ
PISCIVNGVPPHVVNTFCWIHSTFTMPDAFRRQVGREVAHPGVANDFGDE
DAKKYYTYYQWVCFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITIC
TREEKEAKRDALLDYLIKHVKRHKLYAIRYWACEFLCCINIIVQMYLMNR
FFDGEFLSYGTNIMKLSDVPQEQRVDPMVYVFPRVTKCTFHKYGPSGSLQ
KHDSLCILPLNIVNEKTYVFIWFWFWILLVLLIGLIVFRGCIIFMPKFRP
RLLNASNRMIPMEICRSLSRKLDIGDWWLIYMLGRNLDPVIYKDVMSEFA
KQVEPSKHDRAKASFLDH

BO04364.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-PF 362 CG3039-PF 1..362 1..362 1967 100 Plus
ogre-PE 362 CG3039-PE 1..362 1..362 1967 100 Plus
ogre-PD 362 CG3039-PD 1..362 1..362 1967 100 Plus
ogre-PC 362 CG3039-PC 1..362 1..362 1967 100 Plus
ogre-PB 362 CG3039-PB 1..362 1..362 1967 100 Plus