Clone Sequence Records
BO04364.3prime Sequence
903 bp (751 high quality bases) assembled on 2005-12-01
> BO04364.3prime
ATGGTCTAGAAAGCTTGCCTTGGCACGGTCGTGCTTGGAGGGCTCCACCT
GCTTGGCAAACTCGCTCATCACGTCCTTGTAGATGACCGGATCAAGATTG
CGACCCAGCATATAGATTAGCCACCAGTCACCGATGTCCAGTTTGCGGGA
CAGCGAGCGACAGATCTCCATCGGAATCATGCGATTGCTGGCGTTCAGGA
GGCGGGGTCGGAATTTCGGCATAAAGATAATGCAGCCACGGAACACTATC
AGTCCGATGAGCAGGACGAGCAGGATCCAGAACCAGAACCAGATGAACAC
GTACGTCTTCTCGTTCACAATGTTCAGCGGCAGGATGCAGAGTGAGTCGT
GCTTCTGCAGCGAACCAGAGGGACCATACTTGTGGAAGGTGCACTTGGTC
ACCCGGGGGAACACATAGACCATGGGATCCACCCTTTGCTCCTGCGGCAC
ATCCGAAAGCTTCATGATATTCGTACCGTACGAGAGGAACTCGCCATCGA
AAAAGCGATTCATCAGATACATCTGCACGATAATGTTGATGCAGCAGAGA
AATTCGCAGGCCCAGTACCGAATGGCGTACAGCTTGTGGCGCTTCACGTG
CTTGATCAGATAGTCCAGCAGGGCATCGCGTTTGGCCTCCTTCTCCTCGC
GGGTGCAGATCGTGATATTCAGACCCATCACAATCATGCGCATCAGTCCG
CCCTCGAATTTATTCCACAGGAATTTGGGCGTATAACAGGCCATGGCCTG
GAAGAAAAGCACGAAGCACACCCACTGGTAGTAGGTGTAGTACTTCTTGG
CATCCTCGTCGCCAAAATCATTGGCCACACCGGGATGAGCCACCTCTCGG
CCAACCTGTCTGCGAAAAGCGTCCGGCATGGTGAAAGTGCTGTGGATCCA
GCA
BO04364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3039-PA | 1089 | ogre-RA | 202..1086 | 903..19 | 4425 | 100 | Minus |
CG3039-PB | 1089 | ogre-RB | 202..1086 | 903..19 | 4425 | 100 | Minus |
CG4590-PA | 1104 | inx2-RA | 322..362 | 783..743 | 155 | 95.1 | Minus |
CG4590-PB | 1104 | inx2-RB | 322..362 | 783..743 | 155 | 95.1 | Minus |
CG7537-PB | 1260 | inx5-RB | 928..959 | 339..308 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-RF | 3068 | CG3039-RF | 1785..2669 | 903..19 | 4425 | 100 | Minus |
ogre-RE | 1689 | CG3039-RE | 406..1290 | 903..19 | 4425 | 100 | Minus |
ogre-RD | 2794 | CG3039-RD | 1511..2395 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6974731..6975085 | 239..593 | 1775 | 100 | Plus |
X | 23542271 | X | 6974433..6974653 | 19..239 | 1105 | 100 | Plus |
X | 23542271 | X | 6975151..6975308 | 592..749 | 790 | 100 | Plus |
X | 23542271 | X | 6976022..6976133 | 747..858 | 560 | 100 | Plus |
X | 23542271 | X | 6977157..6977206 | 854..903 | 250 | 100 | Plus |
X | 23542271 | X | 6999830..6999953 | 403..280 | 215 | 78.2 | Minus |
X | 23542271 | X | 6999437..6999490 | 796..743 | 195 | 90.7 | Minus |
3R | 32079331 | 3R | 28854962..28855064 | 306..408 | 185 | 78.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:22:16 has no hits.
BO04364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:06 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-PB | 203..1089 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:23 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3039-PB | 203..1089 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:33 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1512..2395 | 19..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:30 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1512..2395 | 19..902 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:30 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6975151..6975306 | 592..747 | 100 | <- | Plus |
X | 6976023..6976130 | 748..855 | 100 | <- | Plus |
X | 6977159..6977205 | 856..902 | 100 | | Plus |
X | 6974433..6974652 | 19..238 | 100 | <- | Plus |
X | 6974731..6975083 | 239..591 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:33 Download gff for
BO04364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6869184..6869339 | 592..747 | 100 | <- | Plus |
arm_X | 6870056..6870163 | 748..855 | 100 | <- | Plus |
arm_X | 6871192..6871238 | 856..902 | 100 | | Plus |
arm_X | 6868466..6868685 | 19..238 | 100 | <- | Plus |
arm_X | 6868764..6869116 | 239..591 | 100 | <- | Plus |
BO04364.5prime Sequence
871 bp (763 high quality bases) assembled on 2005-11-29
> BO04364.5prime
GAAGTTATCAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACC
TCAAGTGGCAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAAC
TCCTTTACCACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCAC
CCAGTACGTGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGC
ACGTGGTCAACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGAC
GCTTTTCGCAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAA
TGATTTTGGCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGG
TGTGCTTCGTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTC
CTGTGGAATAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCT
GAATATCACGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCC
TGCTGGACTATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATT
CGGTACTGGGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGAT
GTATCTGATGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGA
ATATCATGAAGCTTTCGGATGTGCCGCAGGAGCAAAGGGTGGATCCCATG
GTCTATGTGTTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCC
CTCTGGTTCGCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACA
TTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTG
CTCGTCCTGCTCATCGGACTG
BO04364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3039-PA | 1089 | ogre-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
CG3039-PB | 1089 | ogre-RB | 1..855 | 17..871 | 4275 | 100 | Plus |
CG4590-PA | 1104 | inx2-RA | 322..362 | 338..378 | 155 | 95.1 | Plus |
CG4590-PB | 1104 | inx2-RB | 322..362 | 338..378 | 155 | 95.1 | Plus |
CG7537-PB | 1260 | inx5-RB | 928..959 | 782..813 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-RF | 3068 | CG3039-RF | 1584..2438 | 17..871 | 4275 | 100 | Plus |
ogre-RE | 1689 | CG3039-RE | 205..1059 | 17..871 | 4275 | 100 | Plus |
ogre-RD | 2794 | CG3039-RD | 1310..2164 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6974742..6975085 | 871..528 | 1720 | 100 | Minus |
X | 23542271 | X | 6977157..6977407 | 267..17 | 1255 | 100 | Minus |
X | 23542271 | X | 6975151..6975308 | 529..372 | 790 | 100 | Minus |
X | 23542271 | X | 6976022..6976133 | 374..263 | 560 | 100 | Minus |
X | 23542271 | X | 6999830..6999953 | 718..841 | 215 | 78.2 | Plus |
X | 23542271 | X | 6999437..6999490 | 325..378 | 195 | 90.7 | Plus |
3R | 32079331 | 3R | 28854962..28855064 | 815..713 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:01:52 has no hits.
BO04364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:07 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-PB | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:24 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3039-PB | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:04 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2164 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:14 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2164 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:14 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6974742..6975083 | 530..871 | 100 | <- | Minus |
X | 6975151..6975306 | 374..529 | 100 | <- | Minus |
X | 6976023..6976130 | 266..373 | 100 | <- | Minus |
X | 6977159..6977407 | 17..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:04 Download gff for
BO04364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6868775..6869116 | 530..871 | 100 | <- | Minus |
arm_X | 6869184..6869339 | 374..529 | 100 | <- | Minus |
arm_X | 6870056..6870163 | 266..373 | 100 | <- | Minus |
arm_X | 6871192..6871440 | 17..265 | 100 | | Minus |
BO04364.complete Sequence
1120 bp (1120 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629735
> BO04364.complete
GAAGTTATCAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACC
TCAAGTGGCAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAAC
TCCTTTACCACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCAC
CCAGTACGTGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGC
ACGTGGTCAACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGAC
GCTTTTCGCAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAA
TGATTTTGGCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGG
TGTGCTTCGTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTC
CTGTGGAATAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCT
GAATATCACGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCC
TGCTGGACTATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATT
CGGTACTGGGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGAT
GTATCTGATGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGA
ATATCATGAAGCTTTCGGATGTGCCGCAGGAGCAAAGGGTGGATCCCATG
GTCTATGTGTTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCC
CTCTGGTTCGCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACA
TTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTG
CTCGTCCTGCTCATCGGACTGATAGTGTTCCGTGGCTGCATTATCTTTAT
GCCGAAATTCCGACCCCGCCTCCTGAACGCCAGCAATCGCATGATTCCGA
TGGAGATCTGTCGCTCGCTGTCCCGCAAACTGGACATCGGTGACTGGTGG
CTAATCTATATGCTGGGTCGCAATCTTGATCCGGTCATCTACAAGGACGT
GATGAGCGAGTTTGCCAAGCAGGTGGAGCCCTCCAAGCACGACCGTGCCA
AGGCAAGCTTTCTAGACCAT
BO04364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-RF | 1089 | CG3039-PF | 1..1086 | 17..1102 | 5430 | 100 | Plus |
ogre-RE | 1089 | CG3039-PE | 1..1086 | 17..1102 | 5430 | 100 | Plus |
ogre-RD | 1089 | CG3039-PD | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-RF | 3068 | CG3039-RF | 1584..2669 | 17..1102 | 5430 | 100 | Plus |
ogre-RE | 1689 | CG3039-RE | 205..1290 | 17..1102 | 5430 | 100 | Plus |
ogre-RD | 2794 | CG3039-RD | 1310..2395 | 17..1102 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6974731..6975085 | 882..528 | 1775 | 100 | Minus |
X | 23542271 | X | 6977157..6977407 | 267..17 | 1255 | 100 | Minus |
X | 23542271 | X | 6974433..6974653 | 1102..882 | 1105 | 100 | Minus |
X | 23542271 | X | 6975151..6975308 | 529..372 | 790 | 100 | Minus |
X | 23542271 | X | 6976022..6976133 | 374..263 | 560 | 100 | Minus |
X | 23542271 | X | 6999830..6999953 | 718..841 | 215 | 78.2 | Plus |
X | 23542271 | X | 6999437..6999490 | 325..378 | 195 | 90.7 | Plus |
3R | 32079331 | 3R | 28854962..28855064 | 815..713 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:30 has no hits.
BO04364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:08 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RB | 1..1089 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:42 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RB | 318..1403 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:23 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2395 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:08 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RB | 318..1403 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:09 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2395 | 17..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:09 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6974431..6974652 | 883..1104 | 99 | <- | Minus |
X | 6974731..6975083 | 530..882 | 100 | <- | Minus |
X | 6975151..6975306 | 374..529 | 100 | <- | Minus |
X | 6976023..6976130 | 266..373 | 100 | <- | Minus |
X | 6977159..6977407 | 17..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:23 Download gff for
BO04364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6871192..6871440 | 17..265 | 100 | | Minus |
arm_X | 6868464..6868685 | 883..1104 | 99 | <- | Minus |
arm_X | 6868764..6869116 | 530..882 | 100 | <- | Minus |
arm_X | 6869184..6869339 | 374..529 | 100 | <- | Minus |
arm_X | 6870056..6870163 | 266..373 | 100 | <- | Minus |
BO04364.pep Sequence
Translation from 16 to 1120
> BO04364.pep
MYKLLGSLKSYLKWQDIQTDNAVFRLHNSFTTVLLLTCSLIITATQYVGQ
PISCIVNGVPPHVVNTFCWIHSTFTMPDAFRRQVGREVAHPGVANDFGDE
DAKKYYTYYQWVCFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITIC
TREEKEAKRDALLDYLIKHVKRHKLYAIRYWACEFLCCINIIVQMYLMNR
FFDGEFLSYGTNIMKLSDVPQEQRVDPMVYVFPRVTKCTFHKYGPSGSLQ
KHDSLCILPLNIVNEKTYVFIWFWFWILLVLLIGLIVFRGCIIFMPKFRP
RLLNASNRMIPMEICRSLSRKLDIGDWWLIYMLGRNLDPVIYKDVMSEFA
KQVEPSKHDRAKASFLDH
BO04364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-PF | 362 | CG3039-PF | 1..362 | 1..362 | 1967 | 100 | Plus |
ogre-PE | 362 | CG3039-PE | 1..362 | 1..362 | 1967 | 100 | Plus |
ogre-PD | 362 | CG3039-PD | 1..362 | 1..362 | 1967 | 100 | Plus |
ogre-PC | 362 | CG3039-PC | 1..362 | 1..362 | 1967 | 100 | Plus |
ogre-PB | 362 | CG3039-PB | 1..362 | 1..362 | 1967 | 100 | Plus |