Clone Sequence Records
BO04368.3prime Sequence
923 bp (797 high quality bases) assembled on 2005-12-01
> BO04368.3prime
ATGGTCTAGAAAGCTTGCCTTCACTCTTGCTTCGAATTTCACTTTAATGT
TTTGCTGAGTGCGCAGTACGATTCCGTTCTCAAAGGTGAGATCCTCCAAC
TGAGTGGCGGGCAGGAGTTTGAAGTTCCTAATCACAGCGGCTAGGAGCAC
CTTAATTTCCAGGACGCCGAATTTCTGACCTATGCAATTCCTTGGGCCTG
CACTGAAGGGCACAAAGGCAAAGGGATGACGATTCACAGAGTTCTCGGGC
AGAAAACGTTCGGGCAGGAATTGATTTGGTTTCGGGAAATGCCGTGCGTC
TCTCATGATGTCGTATATGTGGATGCTAATCTGGGCATTCTTGGGTAGGA
CTAAGCCATTCATTACACTTTCCTCTATGCACGTTCGGCCAATGATCGGA
GCTGAGGGAAACAACCTCAGTGATTCCTTGATGACGCACTCCAAGTGGAT
CAGTTCGTTAAACTGGAACATACTGACTTCATCAATATCCTCGGGAAGGT
CTTGTAGCTCTTCGTAGCACCGCTCTTGGACATCCGCATGCAGAGCCAAC
AATAACAGTGTAAAGATTAGACTGGTTGATGTGGTATCGTATCCCCCGAA
CATAAAGGTATTGACTTCATCGCAGATTCCCTGATGATCGATCTTGCCCT
CCGCCTCAGCTGCCAAAAGAGTGTCCAGCATGGCGTAACGCTGCTTCTTG
CCAAATTCATCAACTTGGCCAAGTTGTTTCTGCTTGAATTGCTGCCTTTT
GCGTTGAATGATACCGCTCGAGAAGCCGTGAATTGTACGCAGTATCCTGG
AATACTTTTTATAATCTCCGAAAAGGAAGAAGTACCAGTTGAAGAACATG
AGCGGATTGCACATGCGCTGAATGAAAACTATTTCAAAGTCATGGATGGC
CTTTCTGTACTCGTTTCCTTCCG
BO04368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14031-PA | 1530 | Cyp4ac3-RA | 623..1527 | 923..19 | 4500 | 99.8 | Minus |
CG14032-PA | 1530 | Cyp4ac1-RA | 1393..1487 | 153..59 | 350 | 94.7 | Minus |
CG17970-PA | 1494 | Cyp4ac2-RA | 863..923 | 644..584 | 230 | 95 | Minus |
CG14032-PA | 1530 | Cyp4ac1-RA | 796..867 | 750..679 | 210 | 91.6 | Minus |
CG14032-PA | 1530 | Cyp4ac1-RA | 902..962 | 644..584 | 205 | 93.4 | Minus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..830 | 711..677 | 150 | 97.1 | Minus |
CG14032-PA | 1530 | Cyp4ac1-RA | 1211..1247 | 335..299 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac3-RA | 1606 | CG14031-RA | 671..1575 | 923..19 | 4510 | 99.9 | Minus |
Cyp4ac1-RA | 1666 | CG14032-RA | 656..1541 | 923..38 | 1805 | 80.4 | Minus |
Cyp4ac2-RB | 1709 | CG17970-RB | 866..1552 | 723..37 | 945 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5269394..5270298 | 923..19 | 4510 | 99.9 | Minus |
2L | 23513712 | 2L | 5264889..5265774 | 923..38 | 1790 | 80.1 | Minus |
2L | 23513712 | 2L | 5267612..5268298 | 723..37 | 945 | 75.8 | Minus |
3L | 28110227 | 3L | 2476536..2476611 | 149..224 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:20:39 has no hits.
BO04368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:13 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14031-PA | 623..1530 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:34 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14031-PA | 623..1530 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:14 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 671..1575 | 19..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:16 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 671..1575 | 19..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:16 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5269394..5270298 | 19..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:14 Download gff for
BO04368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5269394..5270298 | 19..923 | 99 | | Minus |
BO04368.5prime Sequence
909 bp (743 high quality bases) assembled on 2005-11-29
> BO04368.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
ACCTGAGGG
BO04368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14031-PA | 1530 | Cyp4ac3-RA | 1..892 | 17..908 | 4435 | 99.8 | Plus |
CG14032-PA | 1530 | Cyp4ac1-RA | 796..867 | 812..883 | 210 | 91.6 | Plus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..830 | 851..885 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..940 | 17..908 | 4445 | 99.9 | Plus |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..918 | 17..901 | 1260 | 76.7 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 137..669 | 110..642 | 395 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5269360..5269663 | 605..908 | 1505 | 99.7 | Plus |
2L | 23513712 | 2L | 5268797..5269003 | 216..422 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 5268546..5268747 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5264855..5265151 | 605..901 | 585 | 79.8 | Plus |
2L | 23513712 | 2L | 5269192..5269300 | 497..605 | 530 | 99.1 | Plus |
2L | 23513712 | 2L | 5269051..5269135 | 420..504 | 425 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264216 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5264319..5264496 | 242..419 | 290 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:19:25 has no hits.
BO04368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:14 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14031-PA | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:35 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14031-PA | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:08 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 49..940 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:20 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 49..940 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:20 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5268800..5269003 | 219..422 | 100 | -> | Plus |
2L | 5269054..5269135 | 423..504 | 100 | -> | Plus |
2L | 5268546..5268747 | 17..218 | 100 | -> | Plus |
2L | 5269200..5269300 | 505..605 | 100 | -> | Plus |
2L | 5269361..5269663 | 606..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:08 Download gff for
BO04368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5269200..5269300 | 505..605 | 100 | -> | Plus |
arm_2L | 5268546..5268747 | 17..218 | 100 | -> | Plus |
arm_2L | 5268800..5269003 | 219..422 | 100 | -> | Plus |
arm_2L | 5269054..5269135 | 423..504 | 100 | -> | Plus |
arm_2L | 5269361..5269663 | 606..909 | 99 | | Plus |
BO04368.complete Sequence
1561 bp (1561 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629736
> BO04368.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
AGCTGAGGCGGAGGGCAAGATCGATCATCAGGGAATCTGCGATGAAGTCA
ATACCTTTATGTTCGGGGGATACGATACCACATCAACCAGTCTAATCTTT
ACACTGTTATTGTTGGCTCTGCATGCGGATGTCCAAGAGCGGTGCTACGA
AGAGCTACAAGACCTTCCCGAGGATATTGATGAAGTCAGTATGTTCCAGT
TTAACGAACTGATCCACTTGGAGTGCGTCATCAAGGAATCACTGAGGTTG
TTTCCCTCAGCTCCGATCATTGGCCGAACGTGCATAGAGGAAAGTGTAAT
GAATGGCTTAGTCCTACCCAAGAATGCCCAGATTAGCATCCACATATACG
ACATCATGAGAGACGCACGGCATTTCCCGAAACCAAATCAATTCCTGCCC
GAACGTTTTCTGCCCGAGAACTCTGTGAATCGTCATCCCTTTGCCTTTGT
GCCCTTCAGTGCAGGCCCAAGGAATTGCATAGGTCAGAAATTCGGCGTCC
TGGAAATTAAGGTGCTCCTAGCCGCTGTGATTAGGAACTTCAAACTCCTG
CCCGCCACTCAGTTGGAGGATCTCACCTTTGAGAACGGAATCGTACTGCG
CACTCAGCAAAACATTAAAGTGAAATTCGAAGCAAGAGTGAAGGCAAGCT
TTCTAGACCAT
BO04368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac3-RA | 1530 | CG14031-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Cyp4ac1-RA | 1530 | CG14032-PA | 1..1508 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1536 | CG17970-PB | 826..1512 | 839..1525 | 945 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..1575 | 17..1543 | 7635 | 100 | Plus |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..1541 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 866..1552 | 839..1525 | 945 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5269360..5270298 | 605..1543 | 4695 | 100 | Plus |
2L | 23513712 | 2L | 5264855..5265774 | 605..1524 | 1855 | 80.1 | Plus |
2L | 23513712 | 2L | 5268797..5269003 | 216..422 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 5268546..5268747 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5267612..5268298 | 839..1525 | 945 | 75.8 | Plus |
2L | 23513712 | 2L | 5269192..5269300 | 497..605 | 530 | 99.1 | Plus |
2L | 23513712 | 2L | 5269051..5269135 | 420..504 | 425 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264216 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5264319..5264496 | 242..419 | 290 | 77.5 | Plus |
3L | 28110227 | 3L | 2476536..2476611 | 1413..1338 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:00 has no hits.
BO04368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:09 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 1..1530 | 17..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:44 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 30..1556 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:51 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 49..1575 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:09 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 30..1556 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:54 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac3-RA | 49..1575 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:54 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5268546..5268747 | 17..218 | 100 | -> | Plus |
2L | 5268800..5269003 | 219..422 | 100 | -> | Plus |
2L | 5269054..5269135 | 423..504 | 100 | -> | Plus |
2L | 5269200..5269300 | 505..605 | 100 | -> | Plus |
2L | 5269361..5270298 | 606..1545 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:51 Download gff for
BO04368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5268546..5268747 | 17..218 | 100 | -> | Plus |
arm_2L | 5268800..5269003 | 219..422 | 100 | -> | Plus |
arm_2L | 5269054..5269135 | 423..504 | 100 | -> | Plus |
arm_2L | 5269200..5269300 | 505..605 | 100 | -> | Plus |
arm_2L | 5269361..5270298 | 606..1545 | 99 | | Plus |
BO04368.pep Sequence
Translation from 16 to 1561
> BO04368.pep
MWIALLGSSLLIGALWLLLRQLNKTYFILSLCKRVRTADGSPLESKVFVV
PGKTRFGNNLDLLNLTPANIFSYIRESTAKANGQNYIWNFLFAPEYNIVR
AEDAEEIFQSTKITTKNMSYELIRPFLGDGLLISIDQKWHTRRKTLTPAF
HFNILQSFLSIFKEESKKFIKILDKNVGFELELNQIIPQFTLNNICETAL
GVKLDDMSEGNEYRKAIHDFEIVFNQRMCNPLMFFNWYFFLFGDYKKYSR
ILRTIHGFSSGIIQRKRQQFKQKQLGQVDEFGKKQRYAMLDTLLAAEAEG
KIDHQGICDEVNTFMFGGYDTTSTSLIFTLLLLALHADVQERCYEELQDL
PEDIDEVSMFQFNELIHLECVIKESLRLFPSAPIIGRTCIEESVMNGLVL
PKNAQISIHIYDIMRDARHFPKPNQFLPERFLPENSVNRHPFAFVPFSAG
PRNCIGQKFGVLEIKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQQNI
KVKFEARVKASFLDH
BO04368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac3-PA | 509 | CG14031-PA | 1..509 | 1..509 | 2642 | 100 | Plus |
Cyp4ac1-PA | 509 | CG14032-PA | 1..509 | 1..509 | 2142 | 77 | Plus |
Cyp4ac2-PB | 511 | CG17970-PB | 6..508 | 5..507 | 1895 | 69.8 | Plus |
Cyp4p1-PA | 513 | CG10842-PA | 4..512 | 1..507 | 1118 | 45.7 | Plus |
Cyp4p3-PA | 515 | CG10843-PA | 6..514 | 11..507 | 1080 | 43.6 | Plus |