Clone BO04368 Report

Search the DGRC for BO04368

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ac3-RA
Protein status:BO04368.pep: validated full length
Sequenced Size:1561

Clone Sequence Records

BO04368.3prime Sequence

923 bp (797 high quality bases) assembled on 2005-12-01

> BO04368.3prime
ATGGTCTAGAAAGCTTGCCTTCACTCTTGCTTCGAATTTCACTTTAATGT
TTTGCTGAGTGCGCAGTACGATTCCGTTCTCAAAGGTGAGATCCTCCAAC
TGAGTGGCGGGCAGGAGTTTGAAGTTCCTAATCACAGCGGCTAGGAGCAC
CTTAATTTCCAGGACGCCGAATTTCTGACCTATGCAATTCCTTGGGCCTG
CACTGAAGGGCACAAAGGCAAAGGGATGACGATTCACAGAGTTCTCGGGC
AGAAAACGTTCGGGCAGGAATTGATTTGGTTTCGGGAAATGCCGTGCGTC
TCTCATGATGTCGTATATGTGGATGCTAATCTGGGCATTCTTGGGTAGGA
CTAAGCCATTCATTACACTTTCCTCTATGCACGTTCGGCCAATGATCGGA
GCTGAGGGAAACAACCTCAGTGATTCCTTGATGACGCACTCCAAGTGGAT
CAGTTCGTTAAACTGGAACATACTGACTTCATCAATATCCTCGGGAAGGT
CTTGTAGCTCTTCGTAGCACCGCTCTTGGACATCCGCATGCAGAGCCAAC
AATAACAGTGTAAAGATTAGACTGGTTGATGTGGTATCGTATCCCCCGAA
CATAAAGGTATTGACTTCATCGCAGATTCCCTGATGATCGATCTTGCCCT
CCGCCTCAGCTGCCAAAAGAGTGTCCAGCATGGCGTAACGCTGCTTCTTG
CCAAATTCATCAACTTGGCCAAGTTGTTTCTGCTTGAATTGCTGCCTTTT
GCGTTGAATGATACCGCTCGAGAAGCCGTGAATTGTACGCAGTATCCTGG
AATACTTTTTATAATCTCCGAAAAGGAAGAAGTACCAGTTGAAGAACATG
AGCGGATTGCACATGCGCTGAATGAAAACTATTTCAAAGTCATGGATGGC
CTTTCTGTACTCGTTTCCTTCCG

BO04368.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14031-PA 1530 Cyp4ac3-RA 623..1527 923..19 4500 99.8 Minus
CG14032-PA 1530 Cyp4ac1-RA 1393..1487 153..59 350 94.7 Minus
CG17970-PA 1494 Cyp4ac2-RA 863..923 644..584 230 95 Minus
CG14032-PA 1530 Cyp4ac1-RA 796..867 750..679 210 91.6 Minus
CG14032-PA 1530 Cyp4ac1-RA 902..962 644..584 205 93.4 Minus
CG17970-PA 1494 Cyp4ac2-RA 796..830 711..677 150 97.1 Minus
CG14032-PA 1530 Cyp4ac1-RA 1211..1247 335..299 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 671..1575 923..19 4510 99.9 Minus
Cyp4ac1-RA 1666 CG14032-RA 656..1541 923..38 1805 80.4 Minus
Cyp4ac2-RB 1709 CG17970-RB 866..1552 723..37 945 75.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269394..5270298 923..19 4510 99.9 Minus
2L 23513712 2L 5264889..5265774 923..38 1790 80.1 Minus
2L 23513712 2L 5267612..5268298 723..37 945 75.8 Minus
3L 28110227 3L 2476536..2476611 149..224 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-12 06:20:39 has no hits.

BO04368.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:13 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 623..1530 18..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:34 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 623..1530 18..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:14 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 671..1575 19..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:16 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 671..1575 19..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:16 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5269394..5270298 19..923 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:14 Download gff for BO04368.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5269394..5270298 19..923 99   Minus

BO04368.5prime Sequence

909 bp (743 high quality bases) assembled on 2005-11-29

> BO04368.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
ACCTGAGGG

BO04368.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14031-PA 1530 Cyp4ac3-RA 1..892 17..908 4435 99.8 Plus
CG14032-PA 1530 Cyp4ac1-RA 796..867 812..883 210 91.6 Plus
CG17970-PA 1494 Cyp4ac2-RA 796..830 851..885 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 49..940 17..908 4445 99.9 Plus
Cyp4ac1-RA 1666 CG14032-RA 34..918 17..901 1260 76.7 Plus
Cyp4ac2-RB 1709 CG17970-RB 137..669 110..642 395 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269360..5269663 605..908 1505 99.7 Plus
2L 23513712 2L 5268797..5269003 216..422 1035 100 Plus
2L 23513712 2L 5268546..5268747 17..218 1010 100 Plus
2L 23513712 2L 5264855..5265151 605..901 585 79.8 Plus
2L 23513712 2L 5269192..5269300 497..605 530 99.1 Plus
2L 23513712 2L 5269051..5269135 420..504 425 100 Plus
2L 23513712 2L 5264034..5264216 17..199 300 77.6 Plus
2L 23513712 2L 5264319..5264496 242..419 290 77.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:19:25 has no hits.

BO04368.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:14 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 1..892 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:35 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14031-PA 1..892 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:08 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..940 17..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:20 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..940 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:20 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5268800..5269003 219..422 100 -> Plus
2L 5269054..5269135 423..504 100 -> Plus
2L 5268546..5268747 17..218 100 -> Plus
2L 5269200..5269300 505..605 100 -> Plus
2L 5269361..5269663 606..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:08 Download gff for BO04368.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5269200..5269300 505..605 100 -> Plus
arm_2L 5268546..5268747 17..218 100 -> Plus
arm_2L 5268800..5269003 219..422 100 -> Plus
arm_2L 5269054..5269135 423..504 100 -> Plus
arm_2L 5269361..5269663 606..909 99   Plus

BO04368.complete Sequence

1561 bp (1561 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629736

> BO04368.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGA
TTGGGGCTCTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATT
CTTTCATTATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAG
CAAAGTGTTCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATC
TACTCAATTTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACT
GCCAAAGCCAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGA
ATATAATATTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCA
AAATCACTACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGA
GACGGGCTGCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAAC
TTTGACCCCAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTT
TTAAAGAAGAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGC
TTCGAGCTTGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATAT
TTGCGAAACTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACG
AGTACAGAAAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATG
TGCAATCCGCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTA
TAAAAAGTATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTA
TCATTCAACGCAAAAGGCAGCAATTCAAGCAGAAACAACTTGGCCAAGTT
GATGAATTTGGCAAGAAGCAGCGTTACGCCATGCTGGACACTCTTTTGGC
AGCTGAGGCGGAGGGCAAGATCGATCATCAGGGAATCTGCGATGAAGTCA
ATACCTTTATGTTCGGGGGATACGATACCACATCAACCAGTCTAATCTTT
ACACTGTTATTGTTGGCTCTGCATGCGGATGTCCAAGAGCGGTGCTACGA
AGAGCTACAAGACCTTCCCGAGGATATTGATGAAGTCAGTATGTTCCAGT
TTAACGAACTGATCCACTTGGAGTGCGTCATCAAGGAATCACTGAGGTTG
TTTCCCTCAGCTCCGATCATTGGCCGAACGTGCATAGAGGAAAGTGTAAT
GAATGGCTTAGTCCTACCCAAGAATGCCCAGATTAGCATCCACATATACG
ACATCATGAGAGACGCACGGCATTTCCCGAAACCAAATCAATTCCTGCCC
GAACGTTTTCTGCCCGAGAACTCTGTGAATCGTCATCCCTTTGCCTTTGT
GCCCTTCAGTGCAGGCCCAAGGAATTGCATAGGTCAGAAATTCGGCGTCC
TGGAAATTAAGGTGCTCCTAGCCGCTGTGATTAGGAACTTCAAACTCCTG
CCCGCCACTCAGTTGGAGGATCTCACCTTTGAGAACGGAATCGTACTGCG
CACTCAGCAAAACATTAAAGTGAAATTCGAAGCAAGAGTGAAGGCAAGCT
TTCTAGACCAT

BO04368.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1530 CG14031-PA 1..1527 17..1543 7635 100 Plus
Cyp4ac1-RA 1530 CG14032-PA 1..1508 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1536 CG17970-PB 826..1512 839..1525 945 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-RA 1606 CG14031-RA 49..1575 17..1543 7635 100 Plus
Cyp4ac1-RA 1666 CG14032-RA 34..1541 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1709 CG17970-RB 866..1552 839..1525 945 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5269360..5270298 605..1543 4695 100 Plus
2L 23513712 2L 5264855..5265774 605..1524 1855 80.1 Plus
2L 23513712 2L 5268797..5269003 216..422 1035 100 Plus
2L 23513712 2L 5268546..5268747 17..218 1010 100 Plus
2L 23513712 2L 5267612..5268298 839..1525 945 75.8 Plus
2L 23513712 2L 5269192..5269300 497..605 530 99.1 Plus
2L 23513712 2L 5269051..5269135 420..504 425 100 Plus
2L 23513712 2L 5264034..5264216 17..199 300 77.6 Plus
2L 23513712 2L 5264319..5264496 242..419 290 77.5 Plus
3L 28110227 3L 2476536..2476611 1413..1338 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 16:14:00 has no hits.

BO04368.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:09 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 1..1530 17..1544 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:44 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 30..1556 17..1543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:51 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..1575 17..1545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:09 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 30..1556 17..1543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:54 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac3-RA 49..1575 17..1545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:54 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5268546..5268747 17..218 100 -> Plus
2L 5268800..5269003 219..422 100 -> Plus
2L 5269054..5269135 423..504 100 -> Plus
2L 5269200..5269300 505..605 100 -> Plus
2L 5269361..5270298 606..1545 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:51 Download gff for BO04368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5268546..5268747 17..218 100 -> Plus
arm_2L 5268800..5269003 219..422 100 -> Plus
arm_2L 5269054..5269135 423..504 100 -> Plus
arm_2L 5269200..5269300 505..605 100 -> Plus
arm_2L 5269361..5270298 606..1545 99   Plus

BO04368.pep Sequence

Translation from 16 to 1561

> BO04368.pep
MWIALLGSSLLIGALWLLLRQLNKTYFILSLCKRVRTADGSPLESKVFVV
PGKTRFGNNLDLLNLTPANIFSYIRESTAKANGQNYIWNFLFAPEYNIVR
AEDAEEIFQSTKITTKNMSYELIRPFLGDGLLISIDQKWHTRRKTLTPAF
HFNILQSFLSIFKEESKKFIKILDKNVGFELELNQIIPQFTLNNICETAL
GVKLDDMSEGNEYRKAIHDFEIVFNQRMCNPLMFFNWYFFLFGDYKKYSR
ILRTIHGFSSGIIQRKRQQFKQKQLGQVDEFGKKQRYAMLDTLLAAEAEG
KIDHQGICDEVNTFMFGGYDTTSTSLIFTLLLLALHADVQERCYEELQDL
PEDIDEVSMFQFNELIHLECVIKESLRLFPSAPIIGRTCIEESVMNGLVL
PKNAQISIHIYDIMRDARHFPKPNQFLPERFLPENSVNRHPFAFVPFSAG
PRNCIGQKFGVLEIKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQQNI
KVKFEARVKASFLDH

BO04368.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac3-PA 509 CG14031-PA 1..509 1..509 2642 100 Plus
Cyp4ac1-PA 509 CG14032-PA 1..509 1..509 2142 77 Plus
Cyp4ac2-PB 511 CG17970-PB 6..508 5..507 1895 69.8 Plus
Cyp4p1-PA 513 CG10842-PA 4..512 1..507 1118 45.7 Plus
Cyp4p3-PA 515 CG10843-PA 6..514 11..507 1080 43.6 Plus