Clone BO04372 Report

Search the DGRC for BO04372

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptspn-F-RA
Protein status:BO04372.pep: validated full length
Sequenced Size:1126

Clone Sequence Records

BO04372.3prime Sequence

957 bp (836 high quality bases) assembled on 2005-12-01

> BO04372.3prime
ATGGTCTAGAAAGCTTGCGAAGTCACCCACAGCATGGGAAACGAACTCAA
ACTGGCGCTCAATGCTGTTCTCCGACTCCAGTTCCAGTGCATCGTCGATG
AAGTGCATCTCGACGTGCTCGCGGAACGCATTGAAGGACACTTGGCTGGA
GTACTGCTTGCCGCACATAGGGCAGGTCTTCTCCATTGCGTCGGCTGCAT
CTGCTTTGATTTTCTCTTGTATTATGTTAATTCTCTGGCTGGGCGGCGTG
CCATTGTGTCCATTGTGTTGGCTCTCATAGTTCTTCAGCTCGCTGGTCAG
GCTGTCGTCCGTTTCCAGACTTTTGTCGGCCATCTCCGGTTTTTTGATGG
TTTTCTGGGCACATTCCGGACAGGGCTTGAGTGCTATGCGATTTTCTAGC
AGAGTCATTACCGATCTGAGCTCCTGCTGCTGCTTCATGGCCTCTCGCCT
CAGCTCCTGCAGTCCATCCAAACATCTTTTGGCATCCACATTGGCATCTG
GTTCACTAGTGGTTTCCTCCACCTTTTGCAGGTTGTAGGGGTAACCTAGT
TCCTCACTGCTGGCACCGAAGTCATCCAGGGCTATTTCCTCCAGACTGAG
ATCCTTAATGCCGTCGGAGAGCATCTTTTGGCGAAGGTGAGGATTGGGGG
AGTGCTGCGTAAAGGTCTTGGAGCGCACCAGGTTCTGGTTTTGCTGGGCT
CGCGAGTCTGTTGAGCTGGGCAGTGCGTTCAGCTGCTGATCCTTGGAGAT
CTGCGATAGGCGGGACCAGAGCCGTCTGTTCTCGTTGGATACCATGCCAA
TGTGCTCCTCCAGCTGCTCCTTTTGGCGCTGCAGCTCAGAGACCTGTGCT
TTCAGAGAGAGGACGTCCCCAGTGACCCCGATTTCGTTTGCCCTTGGAGC
ACCTTCCGACCTGCTGGANGCCCTCCTTAGCTGCTGGTTCTCCTCCTCAT
GCTGGGC

BO04372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 163..1092 948..19 4581 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 271..1208 955..19 4624 99.6 Minus
spn-F-RA 1465 CG12114-RA 271..1208 955..19 4624 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255405..31255969 948..384 2784 99.5 Minus
3R 32079331 3R 31256036..31256402 385..19 1835 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:25:45 has no hits.

BO04372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:21 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 153..1095 16..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:45 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 153..1095 16..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:25 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 269..1208 19..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:17:16 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 269..1208 19..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:17:16 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255395..31255969 384..957 99 -> Minus
3R 31256038..31256402 19..383 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:25 Download gff for BO04372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27081117..27081691 384..957 99 -> Minus
arm_3R 27081760..27082124 19..383 100   Minus

BO04372.5prime Sequence

872 bp (765 high quality bases) assembled on 2005-12-01

> BO04372.5prime
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAGGAACTAT
GAGAGCCAACACAATGGACACA

BO04372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 1..856 17..872 4255 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..972 17..872 4265 99.9 Plus
spn-F-RA 1465 CG12114-RA 117..972 17..872 4265 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 17..743 3635 100 Plus
3R 32079331 3R 31256036..31256166 742..872 640 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 23:29:52 has no hits.

BO04372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:22 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:46 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:03 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 115..971 14..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:11 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 115..971 14..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:11 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255241..31255969 14..743 99 -> Plus
3R 31256038..31256165 744..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:03 Download gff for BO04372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080963..27081691 14..743 99 -> Plus
arm_3R 27081760..27081887 744..871 99   Plus

BO04372.complete Sequence

1126 bp (1126 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629737

> BO04372.complete
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAA
CATAATACAAGAGAAAATCAAAGCAGATGCAGCCGACGCAATGGAGAAGA
CCTGCCCTATGTGCGGCAAGCAGTACTCCAGCCAAGTGTCCTTCAATGCG
TTCCGCGAGCACGTCGAGATGCACTTCATCGACGATGCACTGGAACTGGA
GTCGGAGAACAGCATTGAGCGCCAGTTTGAGTTCGTTTCCCATGCTGTGG
GTGACTTCGCAAGCTTTCTAGACCAT

BO04372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1131 CG12114-PB 1..1092 17..1108 5460 100 Plus
spn-F-RA 1095 CG12114-PA 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..1208 17..1108 5460 100 Plus
spn-F-RA 1465 CG12114-RA 117..1208 17..1108 5460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 17..743 3635 100 Plus
3R 32079331 3R 31256036..31256402 742..1108 1835 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:32:15 has no hits.

BO04372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:10 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 1..1095 17..1111 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:46 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 100..1193 14..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:06 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 117..1208 17..1110 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:10 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 100..1193 14..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:40 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 117..1208 17..1110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:40 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31255243..31255969 17..743 100 -> Plus
3R 31256038..31256402 744..1110 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:06 Download gff for BO04372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080965..27081691 17..743 100 -> Plus
arm_3R 27081760..27082124 744..1110 99   Plus

BO04372.pep Sequence

Translation from 16 to 1126

> BO04372.pep
MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR
VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL
EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF
TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET
TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC
AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK
IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI
ERQFEFVSHAVGDFASFLDH

BO04372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-PA 364 CG12114-PA 1..364 1..364 1838 100 Plus
spn-F-PB 376 CG12114-PB 1..364 1..364 1838 100 Plus