Clone Sequence Records
BO04372.3prime Sequence
957 bp (836 high quality bases) assembled on 2005-12-01
> BO04372.3prime
ATGGTCTAGAAAGCTTGCGAAGTCACCCACAGCATGGGAAACGAACTCAA
ACTGGCGCTCAATGCTGTTCTCCGACTCCAGTTCCAGTGCATCGTCGATG
AAGTGCATCTCGACGTGCTCGCGGAACGCATTGAAGGACACTTGGCTGGA
GTACTGCTTGCCGCACATAGGGCAGGTCTTCTCCATTGCGTCGGCTGCAT
CTGCTTTGATTTTCTCTTGTATTATGTTAATTCTCTGGCTGGGCGGCGTG
CCATTGTGTCCATTGTGTTGGCTCTCATAGTTCTTCAGCTCGCTGGTCAG
GCTGTCGTCCGTTTCCAGACTTTTGTCGGCCATCTCCGGTTTTTTGATGG
TTTTCTGGGCACATTCCGGACAGGGCTTGAGTGCTATGCGATTTTCTAGC
AGAGTCATTACCGATCTGAGCTCCTGCTGCTGCTTCATGGCCTCTCGCCT
CAGCTCCTGCAGTCCATCCAAACATCTTTTGGCATCCACATTGGCATCTG
GTTCACTAGTGGTTTCCTCCACCTTTTGCAGGTTGTAGGGGTAACCTAGT
TCCTCACTGCTGGCACCGAAGTCATCCAGGGCTATTTCCTCCAGACTGAG
ATCCTTAATGCCGTCGGAGAGCATCTTTTGGCGAAGGTGAGGATTGGGGG
AGTGCTGCGTAAAGGTCTTGGAGCGCACCAGGTTCTGGTTTTGCTGGGCT
CGCGAGTCTGTTGAGCTGGGCAGTGCGTTCAGCTGCTGATCCTTGGAGAT
CTGCGATAGGCGGGACCAGAGCCGTCTGTTCTCGTTGGATACCATGCCAA
TGTGCTCCTCCAGCTGCTCCTTTTGGCGCTGCAGCTCAGAGACCTGTGCT
TTCAGAGAGAGGACGTCCCCAGTGACCCCGATTTCGTTTGCCCTTGGAGC
ACCTTCCGACCTGCTGGANGCCCTCCTTAGCTGCTGGTTCTCCTCCTCAT
GCTGGGC
BO04372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12114-PA | 1095 | CG12114-RA | 163..1092 | 948..19 | 4581 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 271..1208 | 955..19 | 4624 | 99.6 | Minus |
spn-F-RA | 1465 | CG12114-RA | 271..1208 | 955..19 | 4624 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255405..31255969 | 948..384 | 2784 | 99.5 | Minus |
3R | 32079331 | 3R | 31256036..31256402 | 385..19 | 1835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:25:45 has no hits.
BO04372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:21 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 153..1095 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:45 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 153..1095 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:25 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 269..1208 | 19..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:17:16 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 269..1208 | 19..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:17:16 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255395..31255969 | 384..957 | 99 | -> | Minus |
3R | 31256038..31256402 | 19..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:25 Download gff for
BO04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27081117..27081691 | 384..957 | 99 | -> | Minus |
arm_3R | 27081760..27082124 | 19..383 | 100 | | Minus |
BO04372.5prime Sequence
872 bp (765 high quality bases) assembled on 2005-12-01
> BO04372.5prime
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAGGAACTAT
GAGAGCCAACACAATGGACACA
BO04372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12114-PA | 1095 | CG12114-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 117..972 | 17..872 | 4265 | 99.9 | Plus |
spn-F-RA | 1465 | CG12114-RA | 117..972 | 17..872 | 4265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255243..31255969 | 17..743 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 31256036..31256166 | 742..872 | 640 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:29:52 has no hits.
BO04372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:22 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:13:46 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:03 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 115..971 | 14..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:11 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 115..971 | 14..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:11 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255241..31255969 | 14..743 | 99 | -> | Plus |
3R | 31256038..31256165 | 744..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:03 Download gff for
BO04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27080963..27081691 | 14..743 | 99 | -> | Plus |
arm_3R | 27081760..27081887 | 744..871 | 99 | | Plus |
BO04372.complete Sequence
1126 bp (1126 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629737
> BO04372.complete
GAAGTTATCAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGG
CCAGTTCCATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAA
ATGAACTACGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCAT
CCAGCTGCAGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAA
GGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGG
GTCACTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCG
CCAAAAGGAGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACA
GACGGCTCTGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAAC
GCACTGCCCAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGT
GCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAA
AGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTG
GATGACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCA
AAAGGTGGAGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAA
GATGTTTGGATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAG
CAGGAGCTCAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAA
GCCCTGTCCGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCG
ACAAAAGTCTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTAT
GAGAGCCAACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAA
CATAATACAAGAGAAAATCAAAGCAGATGCAGCCGACGCAATGGAGAAGA
CCTGCCCTATGTGCGGCAAGCAGTACTCCAGCCAAGTGTCCTTCAATGCG
TTCCGCGAGCACGTCGAGATGCACTTCATCGACGATGCACTGGAACTGGA
GTCGGAGAACAGCATTGAGCGCCAGTTTGAGTTCGTTTCCCATGCTGTGG
GTGACTTCGCAAGCTTTCTAGACCAT
BO04372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1131 | CG12114-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
spn-F-RA | 1095 | CG12114-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 117..1208 | 17..1108 | 5460 | 100 | Plus |
spn-F-RA | 1465 | CG12114-RA | 117..1208 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255243..31255969 | 17..743 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 31256036..31256402 | 742..1108 | 1835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:15 has no hits.
BO04372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:10 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 1..1095 | 17..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:46 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 100..1193 | 14..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:06 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 117..1208 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:10 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 100..1193 | 14..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:40 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 117..1208 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:40 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255243..31255969 | 17..743 | 100 | -> | Plus |
3R | 31256038..31256402 | 744..1110 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:06 Download gff for
BO04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27080965..27081691 | 17..743 | 100 | -> | Plus |
arm_3R | 27081760..27082124 | 744..1110 | 99 | | Plus |
BO04372.pep Sequence
Translation from 16 to 1126
> BO04372.pep
MEASAAKITPMASSMSASGSTNSPSSEKMNYALQVALQTIKERCIQLQRR
VASMEEENQQLREASSRSEGAPRANEIGVTGDVLSLKAQVSELQRQKEQL
EEHIGMVSNENRRLWSRLSQISKDQQLNALPSSTDSRAQQNQNLVRSKTF
TQHSPNPHLRQKMLSDGIKDLSLEEIALDDFGASSEELGYPYNLQKVEET
TSEPDANVDAKRCLDGLQELRREAMKQQQELRSVMTLLENRIALKPCPEC
AQKTIKKPEMADKSLETDDSLTSELKNYESQHNGHNGTPPSQRINIIQEK
IKADAADAMEKTCPMCGKQYSSQVSFNAFREHVEMHFIDDALELESENSI
ERQFEFVSHAVGDFASFLDH
BO04372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-PA | 364 | CG12114-PA | 1..364 | 1..364 | 1838 | 100 | Plus |
spn-F-PB | 376 | CG12114-PB | 1..364 | 1..364 | 1838 | 100 | Plus |