Clone BO04388 Report

Search the DGRC for BO04388

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptPp1-87B-RA
Protein status:BO04388.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO04388.3prime Sequence

808 bp (807 high quality bases) assembled on 2005-12-01

> BO04388.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACGCTTGTCGGCTGGCTTGAGGATTT
GGAACGAGCACATCAGCGTATCGTCCACGGACATCATGGCGCCGGCATTG
TCGAACTCGCCGCAGTAGTTGGGCGCCGAGAACAGGGTGACCAGCATGCG
TTTGGCAAAGAACTCGTACCCATCCTCGACGACTTGATGGGCTCGGCAGA
TGAGATCGAACTCGTGCTTCTGCAAAAACTTGGCCACCACCTCGGCACCG
AAGGTGAAGCTAACGCCGCGGTCGTTTTCGCCCCAGCCCATGGTATCCTT
ATCGGGATCGGACCACAGGAGATCGCACAGCAGTCCCTGGTCGGGCACAT
CGGTTGGCCGCATAATGCGACGGATCTGCTCCATGGAGGTCAAATCGGGA
CTGAGACCACCGTGGCAGCAGAAGATCTTCTCGTCGACAATGGCCGCCAC
TGGCAGGCAGTTGAAGCAGTCCGTGAATGTCTTCCACAACTTGATGCTGT
AGCGACGCTTGCATTCGTCGTAGAATCCGTATATGCGATTAATGCTGGCG
CATTCGTGGTTGCCGCGCAGCAGGAAGAAATTCTCCGAGTATTTGATCTT
GTAGGCGAGCAGCAGGCAGATCGTCTCCAGCGATTGCTTGCCGCGATCGA
CGTAGTCGCCGAGGAACAGGTAATTCGATTCCGGCGGAAAGCCGCCGTAC
TCGAACAGACGCAACAGATCGTAGTACTGTCCATGGATGTCGCCGCAGAT
CTTCAACGGTGCCTCTAGCTCGAGCAGAATGGGCTGCGACAGGAAGATCT
CGCGCGAC

BO04388.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5650-PA 909 Pp1-87B-RA 117..906 808..19 3950 100 Minus
CG6593-PA 984 Pp1alpha-96A-RA 211..518 714..407 740 89.6 Minus
CG2096-PA 1386 flw-RA 653..815 668..506 340 88.3 Minus
CG2096-PB 993 flw-RB 260..422 668..506 340 88.3 Minus
CG6593-PA 984 Pp1alpha-96A-RA 538..671 387..254 295 88.8 Minus
CG9156-PA 909 Pp1-13C-RA 429..515 496..410 285 93.1 Minus
CG9156-PA 909 Pp1-13C-RA 172..245 753..680 270 94.5 Minus
CG2096-PA 1386 flw-RA 1187..1277 134..44 230 90.1 Minus
CG2096-PB 993 flw-RB 794..884 134..44 230 90.1 Minus
CG9156-PA 909 Pp1-13C-RA 283..387 642..538 200 87.6 Minus
CG6593-PA 984 Pp1alpha-96A-RA 121..188 804..737 190 91.1 Minus
CG6593-PA 984 Pp1alpha-96A-RA 793..875 132..50 190 89.1 Minus
CG9156-PA 909 Pp1-13C-RA 733..773 192..152 180 97.5 Minus
CG9156-PA 909 Pp1-13C-RA 802..887 123..38 180 88.3 Minus
CG2096-PA 1386 flw-RA 833..927 488..394 175 87.3 Minus
CG2096-PB 993 flw-RB 440..534 488..394 175 87.3 Minus
CG9156-PA 909 Pp1-13C-RA 535..593 390..332 145 89.8 Minus
CG9156-PA 909 Pp1-13C-RA 607..674 318..251 140 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-87B-RA 2203 CG5650-RA 346..1135 808..19 3950 100 Minus
Pp1alpha-96A-RB 3210 CG6593-RB 506..1288 808..26 2250 86 Minus
Pp1alpha-96A-RA 2221 CG6593-RA 506..1288 808..26 2250 86 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12424783..12425572 19..808 3950 100 Plus
X 23542271 X 15359432..15360221 19..808 2060 84.1 Plus
3R 32079331 3R 24518911..24519192 808..527 915 88.3 Minus
3R 32079331 3R 24519597..24519885 525..237 890 87.2 Minus
X 23542271 X 10406420..10406701 808..527 765 84.8 Minus
X 23542271 X 10406764..10407104 525..185 595 78.3 Minus
Y 3667352 Y 3539716..3540455 52..791 490 71.1 Plus
X 23542271 X 10407172..10407299 177..50 340 84.4 Minus
3R 32079331 3R 24519938..24520082 242..98 320 81.4 Minus
X 23542271 X 16567440..16567565 640..765 195 77 Plus
Blast to na_te.dros performed on 2015-02-12 16:03:44 has no hits.

BO04388.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:46 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5650-PA 117..909 15..808 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:22 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5650-PA 117..909 15..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:57 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 346..1138 15..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:10 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 346..1138 15..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:10 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12424780..12425572 15..808 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:57 Download gff for BO04388.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8250502..8251294 15..808 99   Plus

BO04388.5prime Sequence

906 bp (771 high quality bases) assembled on 2005-11-29

> BO04388.5prime
GAAGTTATCAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATAT
CGCGACTTCTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTC
TCGGAGGGCGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCT
GTCGCAGCCCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCG
ACATCCATGGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TTTCCGCCGGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGG
CAAGCAATCGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAAT
ACTCGGAGAATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATT
AATCGCATATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCA
TTGTCGACGAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTG
ACCTCCATGGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGA
CCAGGGACTGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCA
TGGGCTGGGGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAG
GTGGTGGCCAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGC
CCATCAAGTCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGG
TCACCCTGTTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGC
GCCATGATGTTCGTGGACGATACGCTGATGTGCTCCCTCCAAATCCTCAA
GCCAGC

BO04388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5650-PA 909 Pp1-87B-RA 1..890 17..906 4375 99.6 Plus
CG6593-PA 984 Pp1alpha-96A-RA 211..518 227..534 740 89.6 Plus
CG2096-PA 1386 flw-RA 653..815 273..435 340 88.3 Plus
CG2096-PB 993 flw-RB 260..422 273..435 340 88.3 Plus
CG6593-PA 984 Pp1alpha-96A-RA 538..671 554..687 295 88.8 Plus
CG9156-PA 909 Pp1-13C-RA 429..515 445..531 285 93.1 Plus
CG9156-PA 909 Pp1-13C-RA 172..245 188..261 270 94.5 Plus
CG9156-PA 909 Pp1-13C-RA 283..387 299..403 200 87.6 Plus
CG6593-PA 984 Pp1alpha-96A-RA 115..188 131..204 195 90.5 Plus
CG2096-PA 1386 flw-RA 1187..1265 807..885 195 89.8 Plus
CG2096-PB 993 flw-RB 794..872 807..885 195 89.8 Plus
CG9156-PA 909 Pp1-13C-RA 733..773 749..789 180 97.5 Plus
CG2096-PA 1386 flw-RA 833..927 453..547 175 87.3 Plus
CG2096-PB 993 flw-RB 440..534 453..547 175 87.3 Plus
CG6593-PA 984 Pp1alpha-96A-RA 793..870 809..886 165 88.4 Plus
CG9156-PA 909 Pp1-13C-RA 802..887 818..903 155 87.2 Plus
CG9156-PA 909 Pp1-13C-RA 535..593 551..609 145 89.8 Plus
CG9156-PA 909 Pp1-13C-RA 607..674 623..690 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-87B-RA 2203 CG5650-RA 228..1119 15..906 4415 99.7 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 402..1264 29..891 2365 85.1 Plus
Pp1alpha-96A-RA 2221 CG6593-RA 402..1264 29..891 2365 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12424799..12425690 906..15 4415 99.7 Minus
X 23542271 X 15359451..15360313 903..41 2200 83.7 Minus
3R 32079331 3R 24518843..24519192 65..414 1000 85.7 Plus
3R 32079331 3R 24519597..24519885 416..704 890 87.2 Plus
X 23542271 X 10406418..10406701 131..414 775 84.9 Plus
X 23542271 X 10406764..10407104 416..756 595 78.3 Plus
2R 25286936 2R 21881560..21882040 860..380 470 73.2 Minus
3R 32079331 3R 24519938..24520082 699..843 320 81.4 Plus
X 23542271 X 10407172..10407293 764..885 310 83.6 Plus
X 23542271 X 16567440..16567565 301..176 195 77 Minus
Blast to na_te.dros performed on 2015-02-12 01:05:44 has no hits.

BO04388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:47 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5650-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:23 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5650-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:00 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 228..1119 15..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:55 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 228..1119 15..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:55 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12424799..12425690 15..906 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:00 Download gff for BO04388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8250521..8251412 15..906 99   Minus

BO04388.complete Sequence

940 bp (940 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629738

> BO04388.complete
GAAGTTATCAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATAT
CGCGACTTCTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTC
TCGGAGGGCGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCT
GTCGCAGCCCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCG
ACATCCATGGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TTTCCGCCGGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGG
CAAGCAATCGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAAT
ACTCGGAGAATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATT
AATCGCATATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCA
TTGTCGACGAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTG
ACCTCCATGGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGA
CCAGGGACTGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCA
TGGGCTGGGGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAG
GTGGTGGCCAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGC
CCATCAAGTCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGG
TCACCCTGTTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGC
GCCATGATGTCCGTGGACGATACGCTGATGTGCTCGTTCCAAATCCTCAA
GCCAGCCGACAAGCGTAAAAAGGCAAGCTTTCTAGACCAT

BO04388.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-87B-RA 909 CG5650-PA 1..906 17..922 4530 100 Plus
Pp1alpha-96A-RB 984 CG6593-PB 13..899 29..915 2410 84.8 Plus
Pp1alpha-96A-RA 984 CG6593-PA 13..899 29..915 2410 84.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-87B-RA 2203 CG5650-RA 228..1135 15..922 4540 100 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 402..1288 29..915 2410 84.8 Plus
Pp1alpha-96A-RA 2221 CG6593-RA 402..1288 29..915 2410 84.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12424783..12425690 922..15 4540 100 Minus
X 23542271 X 15359432..15360313 922..41 2235 83.6 Minus
3R 32079331 3R 24518843..24519192 65..414 1000 85.7 Plus
3R 32079331 3R 24519597..24519885 416..704 890 87.2 Plus
X 23542271 X 10406418..10406701 131..414 775 84.9 Plus
X 23542271 X 10406764..10407104 416..756 595 78.3 Plus
Y 3667352 Y 3539716..3540455 889..150 490 71.1 Minus
2R 25286936 2R 21881560..21882040 860..380 470 73.2 Minus
2R 25286936 2R 22041989..22042465 830..354 345 71.5 Minus
X 23542271 X 10407172..10407299 764..891 340 84.4 Plus
3R 32079331 3R 24519938..24520082 699..843 320 81.4 Plus
2R 25286936 2R 17955968..17956357 543..154 315 72.1 Minus
2L 23513712 2L 3110485..3110621 710..846 280 80.3 Plus
2R 25286936 2R 17955660..17955762 851..749 230 81.6 Minus
X 23542271 X 16567440..16567565 301..176 195 77 Minus
Blast to na_te.dros performed on 2014-11-27 14:05:10 has no hits.

BO04388.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:15 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:25 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 228..1138 15..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:11 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 230..1135 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:15 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 228..1138 15..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:56 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-87B-RA 230..1135 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:56 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12424781..12425688 17..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:11 Download gff for BO04388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8250503..8251410 17..924 99   Minus

BO04388.pep Sequence

Translation from 16 to 940

> BO04388.pep
MGDVMNIDSIISRLLEVRGARPGKNVQLSEGEIRGLCLKSREIFLSQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE
TICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYSIKLWKTF
TDCFNCLPVAAIVDEKIFCCHGGLSPDLTSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLQKHEFDLICRAHQVVE
DGYEFFAKRMLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR
KKASFLDH

BO04388.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-87B-PA 302 CG5650-PA 1..302 1..302 1619 100 Plus
Pp1alpha-96A-PB 327 CG6593-PB 1..301 1..301 1573 96.7 Plus
Pp1alpha-96A-PA 327 CG6593-PA 1..301 1..301 1573 96.7 Plus
Pp1-13C-PA 302 CG9156-PA 1..302 1..302 1543 93.7 Plus
flw-PC 330 CG2096-PC 1..303 1..302 1430 85.5 Plus