Clone Sequence Records
BO04388.3prime Sequence
808 bp (807 high quality bases) assembled on 2005-12-01
> BO04388.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACGCTTGTCGGCTGGCTTGAGGATTT
GGAACGAGCACATCAGCGTATCGTCCACGGACATCATGGCGCCGGCATTG
TCGAACTCGCCGCAGTAGTTGGGCGCCGAGAACAGGGTGACCAGCATGCG
TTTGGCAAAGAACTCGTACCCATCCTCGACGACTTGATGGGCTCGGCAGA
TGAGATCGAACTCGTGCTTCTGCAAAAACTTGGCCACCACCTCGGCACCG
AAGGTGAAGCTAACGCCGCGGTCGTTTTCGCCCCAGCCCATGGTATCCTT
ATCGGGATCGGACCACAGGAGATCGCACAGCAGTCCCTGGTCGGGCACAT
CGGTTGGCCGCATAATGCGACGGATCTGCTCCATGGAGGTCAAATCGGGA
CTGAGACCACCGTGGCAGCAGAAGATCTTCTCGTCGACAATGGCCGCCAC
TGGCAGGCAGTTGAAGCAGTCCGTGAATGTCTTCCACAACTTGATGCTGT
AGCGACGCTTGCATTCGTCGTAGAATCCGTATATGCGATTAATGCTGGCG
CATTCGTGGTTGCCGCGCAGCAGGAAGAAATTCTCCGAGTATTTGATCTT
GTAGGCGAGCAGCAGGCAGATCGTCTCCAGCGATTGCTTGCCGCGATCGA
CGTAGTCGCCGAGGAACAGGTAATTCGATTCCGGCGGAAAGCCGCCGTAC
TCGAACAGACGCAACAGATCGTAGTACTGTCCATGGATGTCGCCGCAGAT
CTTCAACGGTGCCTCTAGCTCGAGCAGAATGGGCTGCGACAGGAAGATCT
CGCGCGAC
BO04388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5650-PA | 909 | Pp1-87B-RA | 117..906 | 808..19 | 3950 | 100 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 211..518 | 714..407 | 740 | 89.6 | Minus |
CG2096-PA | 1386 | flw-RA | 653..815 | 668..506 | 340 | 88.3 | Minus |
CG2096-PB | 993 | flw-RB | 260..422 | 668..506 | 340 | 88.3 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 538..671 | 387..254 | 295 | 88.8 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 429..515 | 496..410 | 285 | 93.1 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 172..245 | 753..680 | 270 | 94.5 | Minus |
CG2096-PA | 1386 | flw-RA | 1187..1277 | 134..44 | 230 | 90.1 | Minus |
CG2096-PB | 993 | flw-RB | 794..884 | 134..44 | 230 | 90.1 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 283..387 | 642..538 | 200 | 87.6 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 121..188 | 804..737 | 190 | 91.1 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 793..875 | 132..50 | 190 | 89.1 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 733..773 | 192..152 | 180 | 97.5 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 802..887 | 123..38 | 180 | 88.3 | Minus |
CG2096-PA | 1386 | flw-RA | 833..927 | 488..394 | 175 | 87.3 | Minus |
CG2096-PB | 993 | flw-RB | 440..534 | 488..394 | 175 | 87.3 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 535..593 | 390..332 | 145 | 89.8 | Minus |
CG9156-PA | 909 | Pp1-13C-RA | 607..674 | 318..251 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-87B-RA | 2203 | CG5650-RA | 346..1135 | 808..19 | 3950 | 100 | Minus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 506..1288 | 808..26 | 2250 | 86 | Minus |
Pp1alpha-96A-RA | 2221 | CG6593-RA | 506..1288 | 808..26 | 2250 | 86 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12424783..12425572 | 19..808 | 3950 | 100 | Plus |
X | 23542271 | X | 15359432..15360221 | 19..808 | 2060 | 84.1 | Plus |
3R | 32079331 | 3R | 24518911..24519192 | 808..527 | 915 | 88.3 | Minus |
3R | 32079331 | 3R | 24519597..24519885 | 525..237 | 890 | 87.2 | Minus |
X | 23542271 | X | 10406420..10406701 | 808..527 | 765 | 84.8 | Minus |
X | 23542271 | X | 10406764..10407104 | 525..185 | 595 | 78.3 | Minus |
Y | 3667352 | Y | 3539716..3540455 | 52..791 | 490 | 71.1 | Plus |
X | 23542271 | X | 10407172..10407299 | 177..50 | 340 | 84.4 | Minus |
3R | 32079331 | 3R | 24519938..24520082 | 242..98 | 320 | 81.4 | Minus |
X | 23542271 | X | 16567440..16567565 | 640..765 | 195 | 77 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:03:44 has no hits.
BO04388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:46 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5650-PA | 117..909 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:22 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5650-PA | 117..909 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:28:57 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 346..1138 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:10 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 346..1138 | 15..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:10 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12424780..12425572 | 15..808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:28:57 Download gff for
BO04388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8250502..8251294 | 15..808 | 99 | | Plus |
BO04388.5prime Sequence
906 bp (771 high quality bases) assembled on 2005-11-29
> BO04388.5prime
GAAGTTATCAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATAT
CGCGACTTCTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTC
TCGGAGGGCGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCT
GTCGCAGCCCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCG
ACATCCATGGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TTTCCGCCGGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGG
CAAGCAATCGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAAT
ACTCGGAGAATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATT
AATCGCATATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCA
TTGTCGACGAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTG
ACCTCCATGGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGA
CCAGGGACTGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCA
TGGGCTGGGGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAG
GTGGTGGCCAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGC
CCATCAAGTCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGG
TCACCCTGTTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGC
GCCATGATGTTCGTGGACGATACGCTGATGTGCTCCCTCCAAATCCTCAA
GCCAGC
BO04388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5650-PA | 909 | Pp1-87B-RA | 1..890 | 17..906 | 4375 | 99.6 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 211..518 | 227..534 | 740 | 89.6 | Plus |
CG2096-PA | 1386 | flw-RA | 653..815 | 273..435 | 340 | 88.3 | Plus |
CG2096-PB | 993 | flw-RB | 260..422 | 273..435 | 340 | 88.3 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 538..671 | 554..687 | 295 | 88.8 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 429..515 | 445..531 | 285 | 93.1 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 172..245 | 188..261 | 270 | 94.5 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 283..387 | 299..403 | 200 | 87.6 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 115..188 | 131..204 | 195 | 90.5 | Plus |
CG2096-PA | 1386 | flw-RA | 1187..1265 | 807..885 | 195 | 89.8 | Plus |
CG2096-PB | 993 | flw-RB | 794..872 | 807..885 | 195 | 89.8 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 733..773 | 749..789 | 180 | 97.5 | Plus |
CG2096-PA | 1386 | flw-RA | 833..927 | 453..547 | 175 | 87.3 | Plus |
CG2096-PB | 993 | flw-RB | 440..534 | 453..547 | 175 | 87.3 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 793..870 | 809..886 | 165 | 88.4 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 802..887 | 818..903 | 155 | 87.2 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 535..593 | 551..609 | 145 | 89.8 | Plus |
CG9156-PA | 909 | Pp1-13C-RA | 607..674 | 623..690 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-87B-RA | 2203 | CG5650-RA | 228..1119 | 15..906 | 4415 | 99.7 | Plus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 402..1264 | 29..891 | 2365 | 85.1 | Plus |
Pp1alpha-96A-RA | 2221 | CG6593-RA | 402..1264 | 29..891 | 2365 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12424799..12425690 | 906..15 | 4415 | 99.7 | Minus |
X | 23542271 | X | 15359451..15360313 | 903..41 | 2200 | 83.7 | Minus |
3R | 32079331 | 3R | 24518843..24519192 | 65..414 | 1000 | 85.7 | Plus |
3R | 32079331 | 3R | 24519597..24519885 | 416..704 | 890 | 87.2 | Plus |
X | 23542271 | X | 10406418..10406701 | 131..414 | 775 | 84.9 | Plus |
X | 23542271 | X | 10406764..10407104 | 416..756 | 595 | 78.3 | Plus |
2R | 25286936 | 2R | 21881560..21882040 | 860..380 | 470 | 73.2 | Minus |
3R | 32079331 | 3R | 24519938..24520082 | 699..843 | 320 | 81.4 | Plus |
X | 23542271 | X | 10407172..10407293 | 764..885 | 310 | 83.6 | Plus |
X | 23542271 | X | 16567440..16567565 | 301..176 | 195 | 77 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:05:44 has no hits.
BO04388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:47 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5650-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:23 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5650-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:00 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 228..1119 | 15..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:55 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 228..1119 | 15..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:55 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12424799..12425690 | 15..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:00 Download gff for
BO04388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8250521..8251412 | 15..906 | 99 | | Minus |
BO04388.complete Sequence
940 bp (940 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629738
> BO04388.complete
GAAGTTATCAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATAT
CGCGACTTCTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTC
TCGGAGGGCGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCT
GTCGCAGCCCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCG
ACATCCATGGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TTTCCGCCGGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGG
CAAGCAATCGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAAT
ACTCGGAGAATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATT
AATCGCATATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCA
TTGTCGACGAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTG
ACCTCCATGGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGA
CCAGGGACTGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCA
TGGGCTGGGGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAG
GTGGTGGCCAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGC
CCATCAAGTCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGG
TCACCCTGTTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGC
GCCATGATGTCCGTGGACGATACGCTGATGTGCTCGTTCCAAATCCTCAA
GCCAGCCGACAAGCGTAAAAAGGCAAGCTTTCTAGACCAT
BO04388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-87B-RA | 909 | CG5650-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Pp1alpha-96A-RB | 984 | CG6593-PB | 13..899 | 29..915 | 2410 | 84.8 | Plus |
Pp1alpha-96A-RA | 984 | CG6593-PA | 13..899 | 29..915 | 2410 | 84.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-87B-RA | 2203 | CG5650-RA | 228..1135 | 15..922 | 4540 | 100 | Plus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 402..1288 | 29..915 | 2410 | 84.8 | Plus |
Pp1alpha-96A-RA | 2221 | CG6593-RA | 402..1288 | 29..915 | 2410 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12424783..12425690 | 922..15 | 4540 | 100 | Minus |
X | 23542271 | X | 15359432..15360313 | 922..41 | 2235 | 83.6 | Minus |
3R | 32079331 | 3R | 24518843..24519192 | 65..414 | 1000 | 85.7 | Plus |
3R | 32079331 | 3R | 24519597..24519885 | 416..704 | 890 | 87.2 | Plus |
X | 23542271 | X | 10406418..10406701 | 131..414 | 775 | 84.9 | Plus |
X | 23542271 | X | 10406764..10407104 | 416..756 | 595 | 78.3 | Plus |
Y | 3667352 | Y | 3539716..3540455 | 889..150 | 490 | 71.1 | Minus |
2R | 25286936 | 2R | 21881560..21882040 | 860..380 | 470 | 73.2 | Minus |
2R | 25286936 | 2R | 22041989..22042465 | 830..354 | 345 | 71.5 | Minus |
X | 23542271 | X | 10407172..10407299 | 764..891 | 340 | 84.4 | Plus |
3R | 32079331 | 3R | 24519938..24520082 | 699..843 | 320 | 81.4 | Plus |
2R | 25286936 | 2R | 17955968..17956357 | 543..154 | 315 | 72.1 | Minus |
2L | 23513712 | 2L | 3110485..3110621 | 710..846 | 280 | 80.3 | Plus |
2R | 25286936 | 2R | 17955660..17955762 | 851..749 | 230 | 81.6 | Minus |
X | 23542271 | X | 16567440..16567565 | 301..176 | 195 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:10 has no hits.
BO04388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:15 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:25 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 228..1138 | 15..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:11 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 230..1135 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:15 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 228..1138 | 15..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:56 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-87B-RA | 230..1135 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:56 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12424781..12425688 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:11 Download gff for
BO04388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8250503..8251410 | 17..924 | 99 | | Minus |
BO04388.pep Sequence
Translation from 16 to 940
> BO04388.pep
MGDVMNIDSIISRLLEVRGARPGKNVQLSEGEIRGLCLKSREIFLSQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE
TICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYSIKLWKTF
TDCFNCLPVAAIVDEKIFCCHGGLSPDLTSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLQKHEFDLICRAHQVVE
DGYEFFAKRMLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR
KKASFLDH
BO04388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-87B-PA | 302 | CG5650-PA | 1..302 | 1..302 | 1619 | 100 | Plus |
Pp1alpha-96A-PB | 327 | CG6593-PB | 1..301 | 1..301 | 1573 | 96.7 | Plus |
Pp1alpha-96A-PA | 327 | CG6593-PA | 1..301 | 1..301 | 1573 | 96.7 | Plus |
Pp1-13C-PA | 302 | CG9156-PA | 1..302 | 1..302 | 1543 | 93.7 | Plus |
flw-PC | 330 | CG2096-PC | 1..303 | 1..302 | 1430 | 85.5 | Plus |