Clone Sequence Records
BO04391.3prime Sequence
386 bp (306 high quality bases) assembled on 2005-12-01
> BO04391.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCAGAAGCTTGCTCATGTCCTTGTTCT
GCTTGTGAATCTTCAAGTCGACATCCTCAATTTTGTAGTTCATGTTATCC
AGCAATTCATTTTGCGACTCAATTTCGCCACCCAGATCGGTGGCCAGCAT
CTTCAGCACCGACAGGTTGCTGCACATCTCCTCCAGATTGGAATCGATCT
GGGCCTGGAAGGGATTGGCCGCCTGTCGCTGGGGCTGGTAGGTGCTGCTG
GGATCACCACGCAGCTGGCTAACCGGATGATTGTCGTAGCGCTCCGCTGG
TGATAGCGGAGCCGAGGGGCTAGCACCGCCACAGGCACCCTGGTTAATGT
TGCTATTGGCCTCCTGGGAGGACTGACTGCCCGTGG
BO04391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11173-PA | 855 | usnp-RA | 485..852 | 386..19 | 1840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 602..969 | 386..19 | 1840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23843726..23844093 | 19..386 | 1840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:02 has no hits.
BO04391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:49 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-PA | 485..855 | 16..386 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:26 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11173-PA | 485..855 | 16..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:28 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 602..973 | 15..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:04 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 602..973 | 15..386 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:04 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23843722..23844093 | 15..386 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:28 Download gff for
BO04391.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731245..19731616 | 15..386 | 99 | | Plus |
BO04391.5prime Sequence
428 bp (333 high quality bases) assembled on 2005-12-01
> BO04391.5prime
GAAGTTATCAGTCGACATGGCCCATAACTACCTGCAGCCAGTGCACGATC
ACTTCGATGACGTGGACAGATTCGAGGACGTGGACGACGACCTATTCCTG
CAGAACAAACGGACGGGAGCAGCCAAGCTTCCGCAGCAGAGGAGCACCAA
TCCCTTCGAGATGGATGACGATGACGAAGAGGAGATAACCTCGTCGCCAT
CAGTGGCCGCACAGCGACTGGCCTATGCTGAGAAGCGAAGGGCCATTGAG
CAGCGAACTCTGGACTCTACCAACAAAAGCTTGGGTCTGCTCTACGAAAC
CCAGGAGGTGGGTAAGGCGACGGCCGTGGAGCTGGCCAAGCAGCGGGAGC
AACTGGAGAAGACATCACATCAGTTGGACGAGATCAGCTCCACGCTGCGC
TTCAGCCAGCGCCATCTGACTGGTCTGA
BO04391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11173-PA | 855 | usnp-RA | 1..412 | 17..428 | 2060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 118..529 | 17..428 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23844377..23844646 | 286..17 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 23844166..23844310 | 428..284 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:23:00 has no hits.
BO04391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:50 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-PA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:28 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11173-PA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:36 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 110..528 | 9..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:40 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 110..528 | 9..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:40 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23844167..23844309 | 285..427 | 100 | <- | Minus |
| 2R | 23844379..23844652 | 9..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:36 Download gff for
BO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731690..19731832 | 285..427 | 100 | <- | Minus |
| arm_2R | 19731902..19732175 | 9..284 | 98 | | Minus |
BO04391.complete Sequence
886 bp assembled on 2007-10-05
GenBank Submission: FJ629739
> BO04391.complete
GAAGTTATCAGTCGACATGGCCCATAACTACCTGCAGCCAGTGCACGATC
ACTTCGATGACGTGGACAGATTCGAGGACGTGGACGACGACCTATTCCTG
CAGAACAAACGGACGGGAGCAGCCAAGCTTCCGCAGCAGAGGAGCACCAA
TCCCTTCGAGATGGATGACGATGACGAAGAGGAGATAACCTCGTCGCCAT
CAGTGGCCGCACAGCGACTGGCCTATGCTGAGAAGCGAAGGGCCATTGAG
CAGCGAACTCTGGACTCTACCAACAAAAGCTTGGGTCTGCTCTACGAAAC
CCAGGAGGTGGGTAAGGCGACGGCCGTGGAGCTGGCCAAGCAGCGGGAGC
AACTGGAGAAGACATCACATCAGTTGGACGAGATCAGCTCCACGCTGCGC
TTCAGCCAGCGCCATCTGACTGGTCTGAAGAGTGTCTTCGGCGGCCTCAA
GAACTACCTTTCGGGCAACAGGGACCAACCACCCACCGCGACTGGTTCGC
CCACGGGCAGTCAGTCCTCCCAGGAGGCCAATAGCAACATTAACCAGGGT
GCCTGTGGCGGTGCTAGCCCCTCGGCTCCGCTATCACCAGCGGAGCGCTA
CGACAATCATCCGGTTAGCCAGCTGCGTGGTGATCCCAGCAGCACCTACC
AGCCCCAGCGACAGGCGGCCAATCCCTTCCAGGCCCAGATCGATTCCAAT
CTGGAGGAGATGTGCAGCAACCTGTCGGTGCTGAAGATGCTGGCCACCGA
TCTGGGTGGCGAAATTGAGTCGCAAAATGAATTGCTGGATAACATGAACT
ACAAAATTGAGGATGTCGACTTGAAGATTCACAAGCAGAACAAGGACATG
AGCAAGCTTCTGAAGAAGGCAAGCTTTCTAGACCAT
BO04391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 855 | CG11173-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-RA | 1212 | CG11173-RA | 118..969 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23843726..23844310 | 868..284 | 2925 | 100 | Minus |
| 2R | 25286936 | 2R | 23844377..23844646 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:35:36 has no hits.
BO04391.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:19 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:36 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 72..935 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:40 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 118..969 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:19 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usnp-RA | 72..935 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:33 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap29-RA | 118..969 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:33 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23843723..23844309 | 285..870 | 99 | <- | Minus |
| 2R | 23844379..23844646 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:40 Download gff for
BO04391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19731246..19731832 | 285..870 | 99 | <- | Minus |
| arm_2R | 19731902..19732169 | 17..284 | 100 | | Minus |
BO04391.pep Sequence
Translation from 16 to 886
> BO04391.pep
MAHNYLQPVHDHFDDVDRFEDVDDDLFLQNKRTGAAKLPQQRSTNPFEMD
DDDEEEITSSPSVAAQRLAYAEKRRAIEQRTLDSTNKSLGLLYETQEVGK
ATAVELAKQREQLEKTSHQLDEISSTLRFSQRHLTGLKSVFGGLKNYLSG
NRDQPPTATGSPTGSQSSQEANSNINQGACGGASPSAPLSPAERYDNHPV
SQLRGDPSSTYQPQRQAANPFQAQIDSNLEEMCSNLSVLKMLATDLGGEI
ESQNELLDNMNYKIEDVDLKIHKQNKDMSKLLKKASFLDH
BO04391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snap29-PA | 284 | CG11173-PA | 1..284 | 1..284 | 1457 | 100 | Plus |
| Snap24-PA | 212 | CG9474-PA | 7..211 | 59..283 | 174 | 25.3 | Plus |
