Clone Sequence Records
BO04392.3prime Sequence
716 bp (715 high quality bases) assembled on 2005-12-01
> BO04392.3prime
ATGGTCTAGAAAGCTTGCATATAAATAATCGTGCGGAAAGACGGCGCGTG
CGGGCAGATAGCAAGGATCATGTTGGTTGCGGTAGCGACGCGCCAGGAAA
ACAGCCAGGACCTCAGTGAAGCTGAAGAAGATGCCCAGACCGCCGCACAA
CTTGAAGGCATAGTCGATCTTGTCCTCCAGTAGGGGTCCACATGGTTCGC
AACGGCAGTCCGGCTCGGACGAGTGGGCACAGCACTGTTGATTGATCAGC
TCGCACGAGGGCTCATTGGACGGGGGAACCACGGAAGTTGTGCTCGGTGC
GGTGGCATTGAATCCGCAGCATTTCAGACTATCCTGCACTTGTTTGCGCA
AATCCGTGGGCACCGTCATCCATCCTTGCTCGGCGAACTGCTGCTGCTGT
TCGGAGTTGACGGCCAAGCAGGAACTGGCGATGGAGAACTGGATCAGGAA
CAGCATGAACAGAATGATCATGTAGAAGAAGAGCATCACTTGGTGGTGCT
TGACGGCTCCGGCGAGTCCCAGCATGGATATGCATATGAGGATGACACCG
CAGGCCAGGATCCCGCCCACAATCGGCAGGTTGGTCACTATGGAGGCGGC
ACGCGCGTACACGCCCACTCCAATCAGCAGGAATCCAATCATCACATACA
AAATGTTGAGCGCAATTAGCGCGTTTTTCGAGCAGGTGAAACCGCCGCAC
ATGTCGACTGATAACT
BO04392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6323-PA | 687 | Tsp97E-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
CG6323-PB | 747 | Tsp97E-RB | 1..591 | 702..112 | 2955 | 100 | Minus |
CG6323-PB | 747 | Tsp97E-RB | 652..744 | 111..19 | 465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 703..19 | 3425 | 100 | Minus |
Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 703..19 | 3425 | 100 | Minus |
Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 110..474 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 26964118..26964286 | 475..643 | 845 | 100 | Plus |
3R | 32079331 | 3R | 26962359..26962453 | 19..113 | 475 | 100 | Plus |
3R | 32079331 | 3R | 26964643..26964703 | 643..703 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:33:10 has no hits.
BO04392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:51 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:29 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:15 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:39 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 15..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:39 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26962355..26962451 | 15..111 | 97 | <- | Plus |
3R | 26963158..26963520 | 112..474 | 100 | <- | Plus |
3R | 26964118..26964285 | 475..642 | 100 | <- | Plus |
3R | 26964643..26964712 | 643..712 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:15 Download gff for
BO04392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788077..22788173 | 15..111 | 97 | <- | Plus |
arm_3R | 22788880..22789242 | 112..474 | 100 | <- | Plus |
arm_3R | 22789840..22790007 | 475..642 | 100 | <- | Plus |
arm_3R | 22790365..22790434 | 643..712 | 94 | | Plus |
BO04392.5prime Sequence
716 bp (715 high quality bases) assembled on 2005-11-29
> BO04392.5prime
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
GCAAGCTTTCTAGACC
BO04392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6323-PA | 687 | Tsp97E-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG6323-PB | 747 | Tsp97E-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG6323-PB | 747 | Tsp97E-RB | 652..744 | 608..700 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 16..700 | 3425 | 100 | Plus |
Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 16..700 | 3425 | 100 | Plus |
Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 609..245 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 26964118..26964286 | 244..76 | 845 | 100 | Minus |
3R | 32079331 | 3R | 26962359..26962453 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 26964643..26964703 | 76..16 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:33:20 has no hits.
BO04392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:52 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:31 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6323-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:17 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:43 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 106..803 | 7..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:43 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26964118..26964285 | 77..244 | 100 | <- | Minus |
3R | 26964643..26964712 | 7..76 | 94 | | Minus |
3R | 26962355..26962451 | 608..704 | 97 | <- | Minus |
3R | 26963158..26963520 | 245..607 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:17 Download gff for
BO04392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788077..22788173 | 608..704 | 97 | <- | Minus |
arm_3R | 22788880..22789242 | 245..607 | 100 | <- | Minus |
arm_3R | 22789840..22790007 | 77..244 | 100 | <- | Minus |
arm_3R | 22790365..22790434 | 7..76 | 94 | | Minus |
BO04392.complete Sequence
718 bp (718 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629740
> BO04392.complete
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
GCAAGCTTTCTAGACCAT
BO04392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 687 | CG6323-PE | 1..684 | 17..700 | 3420 | 100 | Plus |
Tsp97E-RH | 687 | CG6323-PH | 1..684 | 17..700 | 3420 | 100 | Plus |
Tsp97E-RA | 687 | CG6323-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 16..700 | 3425 | 100 | Plus |
Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 16..700 | 3425 | 100 | Plus |
Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963156..26963520 | 609..245 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 26964118..26964286 | 244..76 | 845 | 100 | Minus |
3R | 32079331 | 3R | 26962359..26962453 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 26964643..26964703 | 76..16 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:02:00 has no hits.
BO04392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:13 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:51 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 114..811 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:48 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 116..799 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:14 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 114..811 | 7..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:17 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RA | 116..799 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:17 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26962356..26962451 | 608..702 | 97 | <- | Minus |
3R | 26963158..26963520 | 245..607 | 100 | <- | Minus |
3R | 26964118..26964285 | 77..244 | 100 | <- | Minus |
3R | 26964643..26964702 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:48 Download gff for
BO04392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22788078..22788173 | 608..702 | 97 | <- | Minus |
arm_3R | 22788880..22789242 | 245..607 | 100 | <- | Minus |
arm_3R | 22789840..22790007 | 77..244 | 100 | <- | Minus |
arm_3R | 22790365..22790424 | 17..76 | 100 | | Minus |
BO04392.pep Sequence
Translation from 16 to 718
> BO04392.pep
MCGGFTCSKNALIALNILYVMIGFLLIGVGVYARAASIVTNLPIVGGILA
CGVILICISMLGLAGAVKHHQVMLFFYMIILFMLFLIQFSIASSCLAVNS
EQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVPPSNEPSC
ELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLA
VFLARRYRNQHDPCYLPARAVFPHDYLYASFLDH
BO04392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-PE | 228 | CG6323-PE | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PH | 228 | CG6323-PH | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PA | 228 | CG6323-PA | 1..228 | 1..228 | 1214 | 100 | Plus |
Tsp97E-PG | 221 | CG6323-PG | 1..218 | 1..218 | 1093 | 95.4 | Plus |
Tsp97E-PD | 221 | CG6323-PD | 1..218 | 1..218 | 1093 | 95.4 | Plus |