Clone BO04392 Report

Search the DGRC for BO04392

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptTsp97E-RA
Protein status:BO04392.pep: validated full length
Sequenced Size:718

Clone Sequence Records

BO04392.3prime Sequence

716 bp (715 high quality bases) assembled on 2005-12-01

> BO04392.3prime
ATGGTCTAGAAAGCTTGCATATAAATAATCGTGCGGAAAGACGGCGCGTG
CGGGCAGATAGCAAGGATCATGTTGGTTGCGGTAGCGACGCGCCAGGAAA
ACAGCCAGGACCTCAGTGAAGCTGAAGAAGATGCCCAGACCGCCGCACAA
CTTGAAGGCATAGTCGATCTTGTCCTCCAGTAGGGGTCCACATGGTTCGC
AACGGCAGTCCGGCTCGGACGAGTGGGCACAGCACTGTTGATTGATCAGC
TCGCACGAGGGCTCATTGGACGGGGGAACCACGGAAGTTGTGCTCGGTGC
GGTGGCATTGAATCCGCAGCATTTCAGACTATCCTGCACTTGTTTGCGCA
AATCCGTGGGCACCGTCATCCATCCTTGCTCGGCGAACTGCTGCTGCTGT
TCGGAGTTGACGGCCAAGCAGGAACTGGCGATGGAGAACTGGATCAGGAA
CAGCATGAACAGAATGATCATGTAGAAGAAGAGCATCACTTGGTGGTGCT
TGACGGCTCCGGCGAGTCCCAGCATGGATATGCATATGAGGATGACACCG
CAGGCCAGGATCCCGCCCACAATCGGCAGGTTGGTCACTATGGAGGCGGC
ACGCGCGTACACGCCCACTCCAATCAGCAGGAATCCAATCATCACATACA
AAATGTTGAGCGCAATTAGCGCGTTTTTCGAGCAGGTGAAACCGCCGCAC
ATGTCGACTGATAACT

BO04392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6323-PA 687 Tsp97E-RA 1..684 702..19 3420 100 Minus
CG6323-PB 747 Tsp97E-RB 1..591 702..112 2955 100 Minus
CG6323-PB 747 Tsp97E-RB 652..744 111..19 465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..799 703..19 3425 100 Minus
Tsp97E-RH 2094 CG6323-RH 115..799 703..19 3425 100 Minus
Tsp97E-RA 1433 CG6323-RA 115..799 703..19 3425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 110..474 1825 100 Plus
3R 32079331 3R 26964118..26964286 475..643 845 100 Plus
3R 32079331 3R 26962359..26962453 19..113 475 100 Plus
3R 32079331 3R 26964643..26964703 643..703 305 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:33:10 has no hits.

BO04392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:51 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 16..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:29 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 16..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:15 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 15..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:39 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 15..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:39 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26962355..26962451 15..111 97 <- Plus
3R 26963158..26963520 112..474 100 <- Plus
3R 26964118..26964285 475..642 100 <- Plus
3R 26964643..26964712 643..712 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:15 Download gff for BO04392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788077..22788173 15..111 97 <- Plus
arm_3R 22788880..22789242 112..474 100 <- Plus
arm_3R 22789840..22790007 475..642 100 <- Plus
arm_3R 22790365..22790434 643..712 94   Plus

BO04392.5prime Sequence

716 bp (715 high quality bases) assembled on 2005-11-29

> BO04392.5prime
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
GCAAGCTTTCTAGACC

BO04392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6323-PA 687 Tsp97E-RA 1..684 17..700 3420 100 Plus
CG6323-PB 747 Tsp97E-RB 1..591 17..607 2955 100 Plus
CG6323-PB 747 Tsp97E-RB 652..744 608..700 465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..799 16..700 3425 100 Plus
Tsp97E-RH 2094 CG6323-RH 115..799 16..700 3425 100 Plus
Tsp97E-RA 1433 CG6323-RA 115..799 16..700 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 609..245 1825 100 Minus
3R 32079331 3R 26964118..26964286 244..76 845 100 Minus
3R 32079331 3R 26962359..26962453 700..606 475 100 Minus
3R 32079331 3R 26964643..26964703 76..16 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:33:20 has no hits.

BO04392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:52 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:31 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6323-PA 1..687 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:17 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 7..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:43 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 106..803 7..704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:43 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26964118..26964285 77..244 100 <- Minus
3R 26964643..26964712 7..76 94   Minus
3R 26962355..26962451 608..704 97 <- Minus
3R 26963158..26963520 245..607 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:17 Download gff for BO04392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788077..22788173 608..704 97 <- Minus
arm_3R 22788880..22789242 245..607 100 <- Minus
arm_3R 22789840..22790007 77..244 100 <- Minus
arm_3R 22790365..22790434 7..76 94   Minus

BO04392.complete Sequence

718 bp (718 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629740

> BO04392.complete
GAAGTTATCAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGC
TAATTGCGCTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGA
GTGGGCGTGTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGT
GGGCGGGATCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGG
GACTCGCCGGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATG
ATCATTCTGTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTG
CTTGGCCGTCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGA
TGACGGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGC
TGCGGATTCAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTC
CAATGAGCCCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGT
CCGAGCCGGACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAG
ATCGACTATGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTT
CACTGAGGTCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATG
ATCCTTGCTATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATAT
GCAAGCTTTCTAGACCAT

BO04392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 687 CG6323-PE 1..684 17..700 3420 100 Plus
Tsp97E-RH 687 CG6323-PH 1..684 17..700 3420 100 Plus
Tsp97E-RA 687 CG6323-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RE 1757 CG6323-RE 115..799 16..700 3425 100 Plus
Tsp97E-RH 2094 CG6323-RH 115..799 16..700 3425 100 Plus
Tsp97E-RA 1433 CG6323-RA 115..799 16..700 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963156..26963520 609..245 1825 100 Minus
3R 32079331 3R 26964118..26964286 244..76 845 100 Minus
3R 32079331 3R 26962359..26962453 700..606 475 100 Minus
3R 32079331 3R 26964643..26964703 76..16 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:02:00 has no hits.

BO04392.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:13 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 1..687 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:51 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 114..811 7..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:48 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 116..799 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:14 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 114..811 7..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:17 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RA 116..799 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:17 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26962356..26962451 608..702 97 <- Minus
3R 26963158..26963520 245..607 100 <- Minus
3R 26964118..26964285 77..244 100 <- Minus
3R 26964643..26964702 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:48 Download gff for BO04392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22788078..22788173 608..702 97 <- Minus
arm_3R 22788880..22789242 245..607 100 <- Minus
arm_3R 22789840..22790007 77..244 100 <- Minus
arm_3R 22790365..22790424 17..76 100   Minus

BO04392.pep Sequence

Translation from 16 to 718

> BO04392.pep
MCGGFTCSKNALIALNILYVMIGFLLIGVGVYARAASIVTNLPIVGGILA
CGVILICISMLGLAGAVKHHQVMLFFYMIILFMLFLIQFSIASSCLAVNS
EQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVPPSNEPSC
ELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLA
VFLARRYRNQHDPCYLPARAVFPHDYLYASFLDH

BO04392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-PE 228 CG6323-PE 1..228 1..228 1214 100 Plus
Tsp97E-PH 228 CG6323-PH 1..228 1..228 1214 100 Plus
Tsp97E-PA 228 CG6323-PA 1..228 1..228 1214 100 Plus
Tsp97E-PG 221 CG6323-PG 1..218 1..218 1093 95.4 Plus
Tsp97E-PD 221 CG6323-PD 1..218 1..218 1093 95.4 Plus