Clone BO04393 Report

Search the DGRC for BO04393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:43
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG1971-RA
Protein status:BO04393.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO04393.3prime Sequence

821 bp (744 high quality bases) assembled on 2005-12-01

> BO04393.3prime
ATGGTCTAGAAAGCTTGCCCGATCGGCCCTTATATCCGCCCCCGATTCGT
TATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTAG
CCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACAG
GAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGAC
GGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAAT
GCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGAG
CTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCTA
GAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTCC
TGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCAA
TAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACGG
CGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGATC
AGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCTG
CATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGACT
GCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAGG
TTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAATT
ACTTAGAAAGACAGGAATTATATTTTCGCTCTCTGATGCTGAATTATTGT
CGGCCATGTCGACTGATAACT

BO04393.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..789 807..19 3945 100 Minus
CG1971-PB 639 CG1971-RB 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..915 807..19 3945 100 Minus
CG1971-RB 1106 CG1971-RB 103..846 762..19 3720 100 Minus
CG1971-RC 1034 CG1971-RC 54..774 739..19 3605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806509 762..19 3720 100 Minus
3R 32079331 3R 31805594..31805639 807..762 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:33:30 has no hits.

BO04393.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:53 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 15..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:32 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 15..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:19 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 15..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:47 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 15..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:47 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 762..807 100 -> Minus
3R 31805767..31806512 15..761 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:19 Download gff for BO04393.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 762..807 100 -> Minus
arm_3R 27631489..27632234 15..761 99   Minus

BO04393.5prime Sequence

821 bp (707 high quality bases) assembled on 2005-11-29

> BO04393.5prime
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGGCAAGCTTTCTAGACC

BO04393.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..789 17..805 3945 100 Plus
CG1971-PB 639 CG1971-RB 1..636 170..805 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..915 17..805 3945 100 Plus
CG1971-RB 1106 CG1971-RB 103..846 62..805 3720 100 Plus
CG1971-RC 1034 CG1971-RC 54..774 85..805 3605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806509 62..805 3720 100 Plus
3R 32079331 3R 31805594..31805639 17..62 230 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:03:25 has no hits.

BO04393.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:54 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:34 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:21 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:54 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 17..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:54 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 17..62 100 -> Plus
3R 31805767..31806512 63..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:21 Download gff for BO04393.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 17..62 100 -> Plus
arm_3R 27631489..27632234 63..809 99   Plus

BO04393.complete Sequence

823 bp (823 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629741

> BO04393.complete
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGGCAAGCTTTCTAGACCAT

BO04393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 792 CG1971-PA 1..789 17..805 3945 100 Plus
CG1971-RD 639 CG1971-PD 1..636 170..805 3180 100 Plus
CG1971-RC 639 CG1971-PC 1..636 170..805 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..915 17..805 3945 100 Plus
CG1971-RB 1106 CG1971-RB 103..846 62..805 3720 100 Plus
CG1971-RC 1034 CG1971-RC 54..774 85..805 3605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806509 62..805 3720 100 Plus
3R 32079331 3R 31805594..31805639 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:12:08 has no hits.

BO04393.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:31 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:52 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:04 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..915 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:31 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..918 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:22 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..915 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:22 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 17..62 100 -> Plus
3R 31805767..31806509 63..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:04 Download gff for BO04393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 17..62 100 -> Plus
arm_3R 27631489..27632231 63..807 99   Plus

BO04393.pep Sequence

Translation from 16 to 823

> BO04393.pep
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADRASFLDH

BO04393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 263 CG1971-PA 1..263 1..263 1341 100 Plus
CG1971-PD 212 CG1971-PD 1..212 52..263 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 52..263 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 52..263 1084 100 Plus