Clone Sequence Records
BO04393.3prime Sequence
821 bp (744 high quality bases) assembled on 2005-12-01
> BO04393.3prime
ATGGTCTAGAAAGCTTGCCCGATCGGCCCTTATATCCGCCCCCGATTCGT
TATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTAG
CCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACAG
GAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGAC
GGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAAT
GCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGAG
CTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCTA
GAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTCC
TGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCAA
TAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACGG
CGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGATC
AGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCTG
CATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGACT
GCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAGG
TTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAATT
ACTTAGAAAGACAGGAATTATATTTTCGCTCTCTGATGCTGAATTATTGT
CGGCCATGTCGACTGATAACT
BO04393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
CG1971-PB | 639 | CG1971-RB | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..915 | 807..19 | 3945 | 100 | Minus |
CG1971-RB | 1106 | CG1971-RB | 103..846 | 762..19 | 3720 | 100 | Minus |
CG1971-RC | 1034 | CG1971-RC | 54..774 | 739..19 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806509 | 762..19 | 3720 | 100 | Minus |
3R | 32079331 | 3R | 31805594..31805639 | 807..762 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:33:30 has no hits.
BO04393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:53 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:32 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:19 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:47 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 15..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:47 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 762..807 | 100 | -> | Minus |
3R | 31805767..31806512 | 15..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:19 Download gff for
BO04393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 762..807 | 100 | -> | Minus |
arm_3R | 27631489..27632234 | 15..761 | 99 | | Minus |
BO04393.5prime Sequence
821 bp (707 high quality bases) assembled on 2005-11-29
> BO04393.5prime
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGGCAAGCTTTCTAGACC
BO04393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG1971-PB | 639 | CG1971-RB | 1..636 | 170..805 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..915 | 17..805 | 3945 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 103..846 | 62..805 | 3720 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 54..774 | 85..805 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806509 | 62..805 | 3720 | 100 | Plus |
3R | 32079331 | 3R | 31805594..31805639 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:03:25 has no hits.
BO04393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:01:54 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:34 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:21 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:54 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 17..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:54 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 17..62 | 100 | -> | Plus |
3R | 31805767..31806512 | 63..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:21 Download gff for
BO04393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 17..62 | 100 | -> | Plus |
arm_3R | 27631489..27632234 | 63..809 | 99 | | Plus |
BO04393.complete Sequence
823 bp (823 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629741
> BO04393.complete
GAAGTTATCAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAA
ATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGT
CAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCAT
TCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGG
TGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCC
GGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGC
TGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTG
ACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAA
AGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTC
ACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCAC
GGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGC
AGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCC
CGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCT
GCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCC
GTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGT
AGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCG
ATCGGGCAAGCTTTCTAGACCAT
BO04393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 792 | CG1971-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG1971-RD | 639 | CG1971-PD | 1..636 | 170..805 | 3180 | 100 | Plus |
CG1971-RC | 639 | CG1971-PC | 1..636 | 170..805 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..915 | 17..805 | 3945 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 103..846 | 62..805 | 3720 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 54..774 | 85..805 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806509 | 62..805 | 3720 | 100 | Plus |
3R | 32079331 | 3R | 31805594..31805639 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:12:08 has no hits.
BO04393.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:31 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:52 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:04 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..915 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:31 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..918 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:22 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..915 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:22 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 17..62 | 100 | -> | Plus |
3R | 31805767..31806509 | 63..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:04 Download gff for
BO04393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 17..62 | 100 | -> | Plus |
arm_3R | 27631489..27632231 | 63..807 | 99 | | Plus |
BO04393.pep Sequence
Translation from 16 to 823
> BO04393.pep
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADRASFLDH
BO04393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 263 | CG1971-PA | 1..263 | 1..263 | 1341 | 100 | Plus |
CG1971-PD | 212 | CG1971-PD | 1..212 | 52..263 | 1084 | 100 | Plus |
CG1971-PC | 212 | CG1971-PC | 1..212 | 52..263 | 1084 | 100 | Plus |
CG1971-PB | 212 | CG1971-PB | 1..212 | 52..263 | 1084 | 100 | Plus |