Clone BO04401 Report

Search the DGRC for BO04401

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0269-RA
Protein status:BO04401.pep: validated full length
Sequenced Size:763

Clone Sequence Records

BO04401.5prime Sequence

761 bp (684 high quality bases) assembled on 2005-11-29

> BO04401.5prime
GAAGTTATCAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGC
TTTTGTTGTTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAAT
CGCCAAGTGCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTT
CCCGTTGTCACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGA
CCCTCGTTCTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCG
ATGCCCCGGAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAA
AGTGACCATCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGC
ATGTGGACTACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTC
TTCACGGCCAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGA
CAACGGACGAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGC
CCGACTACGGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTA
AATAGGATATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCC
CAACAACGCCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGG
CGCTGCTGTCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGAC
GTGAGATCGGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAG
CTTTCTAAACC

BO04401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1696-PA 732 l(1)G0269-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 3043 CG1696-RA 781..1509 17..745 3645 100 Plus
Dd-RB 3034 CG1696-RB 781..1500 17..745 3500 98.8 Plus
Dd-RC 2860 CG1696-RC 781..1137 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21321903..21322162 375..116 1300 100 Minus
X 23542271 X 21321325..21321514 745..556 950 100 Minus
X 23542271 X 21321637..21321820 556..373 920 100 Minus
X 23542271 X 21323131..21323229 115..17 495 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:03:46 has no hits.

BO04401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:01 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 17..746 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:44 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:23 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 12..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:58 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 12..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:58 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21321905..21322162 116..373 100 <- Minus
X 21323131..21323233 12..115 98   Minus
X 21321321..21321513 557..751 98 <- Minus
X 21321637..21321819 374..556 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:23 Download gff for BO04401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21192348..21192540 557..751 98 <- Minus
arm_X 21192664..21192846 374..556 100 <- Minus
arm_X 21192932..21193189 116..373 100 <- Minus
arm_X 21194158..21194260 12..115 98   Minus

BO04401.3prime Sequence

761 bp (760 high quality bases) assembled on 2005-12-01

> BO04401.3prime
ATGGTCTAGAAAGCTTGCCCAGAGGCGGTGCAGGTGCAAGTTCCTCGACA
GCACCGATCTCACGTCGTTCGTGAACCTCAGCGCATCCAGCATGGGCAGC
AGCGACAGCAGCGCCGTGTCCATCGGGTCCGAGAACCAACTCTTGATGGG
TATGGCGTTGTTGGGAAAACAGCGATAGGCGCCGGGCGAATTGTCGATGA
TAAATATCCTATTTAGGTCACTGCAGATGGCCGACAGGTCTTTGGTGTAG
GATCCGTAGTCGGGCGTGCAGTGCTGTCTGTAGTATCGCCTCCGGAGGAT
GTTTCGTCCGTTGTCCAGCTTGTCTGCCACCGCCGCTCCGTAAATCTCCA
TGCTGGCCGTGAAGACCACCAGATCGTACCACTGCGAGACCACGTCCAGG
AAGTAGTCCACATGCGGTCGCTTGTGCACGAAAAAGCGCACTGGATTCCG
ATCGATGGTCACTTTGACAGTGAAATCGTGCGGCGTGCCCGGCTTCACCG
TATTCCGGGGCATCGCATTGTGATGGGAGTGGATTAGCGTTTCGTCCAGG
TCCAGAACGAGGGTCTTGCGCTGCACCAGGCTCAGGCGGTGCCGCGAGAC
GGGTGACAACGGGAAGAGTTCGTATTTAACCGGTTGATACTGGATAAAAG
CTCGCACTTGGCGATTGAACATGAAACAAATGCATGTCCATACTTTTGAT
AGCAACAACAAAAGCGCACGGAATTTCATTTGCAGCAGCGAAATCATGTC
GACTGATAACT

BO04401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1696-PA 732 l(1)G0269-RA 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 3043 CG1696-RA 781..1509 747..19 3645 100 Minus
Dd-RB 3034 CG1696-RB 781..1500 747..19 3500 98.8 Minus
Dd-RC 2860 CG1696-RC 781..1137 747..391 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21321903..21322162 389..648 1300 100 Plus
X 23542271 X 21321325..21321514 19..208 950 100 Plus
X 23542271 X 21321637..21321820 208..391 920 100 Plus
X 23542271 X 21323131..21323229 649..747 495 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:33:41 has no hits.

BO04401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:00 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:43 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:22 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 13..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:52 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 13..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:52 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21321321..21321513 13..207 98 <- Plus
X 21321637..21321819 208..390 100 <- Plus
X 21321905..21322162 391..648 100 <- Plus
X 21323131..21323233 649..752 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:22 Download gff for BO04401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21192348..21192540 13..207 98 <- Plus
arm_X 21192664..21192846 208..390 100 <- Plus
arm_X 21192932..21193189 391..648 100 <- Plus
arm_X 21194158..21194260 649..752 98   Plus

BO04401.complete Sequence

763 bp (763 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629742

> BO04401.complete
GAAGTTATCAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGC
TTTTGTTGTTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAAT
CGCCAAGTGCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTT
CCCGTTGTCACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGA
CCCTCGTTCTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCG
ATGCCCCGGAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAA
AGTGACCATCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGC
ATGTGGACTACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTC
TTCACGGCCAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGA
CAACGGACGAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGC
CCGACTACGGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTA
AATAGGATATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCC
CAACAACGCCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGG
CGCTGCTGTCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGAC
GTGAGATCGGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAG
CTTTCTAGACCAT

BO04401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 732 CG1696-PA 1..729 17..745 3645 100 Plus
Dd-RB 723 CG1696-PB 1..720 17..745 3475 98.8 Plus
Dd-RC 549 CG1696-PC 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 3043 CG1696-RA 781..1509 17..745 3645 100 Plus
Dd-RB 3034 CG1696-RB 781..1500 17..745 3475 98.8 Plus
Dd-RC 2860 CG1696-RC 781..1137 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21321903..21322162 375..116 1300 100 Minus
X 23542271 X 21321325..21321514 745..556 950 100 Minus
X 23542271 X 21321637..21321820 556..373 920 100 Minus
X 23542271 X 21323131..21323229 115..17 495 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:03:20 has no hits.

BO04401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:05 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 1..732 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:11 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 801..1537 12..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:36 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 781..1509 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:06 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 801..1537 12..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:39 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 781..1509 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:39 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
X 21321321..21321513 557..747 98 <- Minus
X 21321637..21321819 374..556 100 <- Minus
X 21321905..21322162 116..373 100 <- Minus
X 21323131..21323229 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:36 Download gff for BO04401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21192348..21192540 557..747 98 <- Minus
arm_X 21192664..21192846 374..556 100 <- Minus
arm_X 21192932..21193189 116..373 100 <- Minus
arm_X 21194158..21194256 17..115 100   Minus

BO04401.pep Sequence

Translation from 16 to 763

> BO04401.pep
MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV
SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR
NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI
LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP
IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLWASFLDH

BO04401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-PA 243 CG1696-PA 1..243 1..243 1293 100 Plus
Dd-PB 240 CG1696-PB 1..240 1..243 1264 98.8 Plus
Dd-PC 182 CG1696-PC 1..120 1..120 632 99.2 Plus
CG8584-PA 293 CG8584-PA 72..282 37..240 520 50.9 Plus
CG12078-PB 236 CG12078-PB 10..227 14..235 445 44.2 Plus
Dd-PC 182 CG1696-PC 117..182 178..243 339 97 Plus