Clone Sequence Records
BO04401.5prime Sequence
761 bp (684 high quality bases) assembled on 2005-11-29
> BO04401.5prime
GAAGTTATCAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGC
TTTTGTTGTTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAAT
CGCCAAGTGCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTT
CCCGTTGTCACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGA
CCCTCGTTCTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCG
ATGCCCCGGAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAA
AGTGACCATCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGC
ATGTGGACTACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTC
TTCACGGCCAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGA
CAACGGACGAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGC
CCGACTACGGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTA
AATAGGATATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCC
CAACAACGCCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGG
CGCTGCTGTCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGAC
GTGAGATCGGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAG
CTTTCTAAACC
BO04401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1696-PA | 732 | l(1)G0269-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 3043 | CG1696-RA | 781..1509 | 17..745 | 3645 | 100 | Plus |
Dd-RB | 3034 | CG1696-RB | 781..1500 | 17..745 | 3500 | 98.8 | Plus |
Dd-RC | 2860 | CG1696-RC | 781..1137 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21321903..21322162 | 375..116 | 1300 | 100 | Minus |
X | 23542271 | X | 21321325..21321514 | 745..556 | 950 | 100 | Minus |
X | 23542271 | X | 21321637..21321820 | 556..373 | 920 | 100 | Minus |
X | 23542271 | X | 21323131..21323229 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:03:46 has no hits.
BO04401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:01 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:44 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:23 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 12..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:58 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 12..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:58 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21321905..21322162 | 116..373 | 100 | <- | Minus |
X | 21323131..21323233 | 12..115 | 98 | | Minus |
X | 21321321..21321513 | 557..751 | 98 | <- | Minus |
X | 21321637..21321819 | 374..556 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:23 Download gff for
BO04401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21192348..21192540 | 557..751 | 98 | <- | Minus |
arm_X | 21192664..21192846 | 374..556 | 100 | <- | Minus |
arm_X | 21192932..21193189 | 116..373 | 100 | <- | Minus |
arm_X | 21194158..21194260 | 12..115 | 98 | | Minus |
BO04401.3prime Sequence
761 bp (760 high quality bases) assembled on 2005-12-01
> BO04401.3prime
ATGGTCTAGAAAGCTTGCCCAGAGGCGGTGCAGGTGCAAGTTCCTCGACA
GCACCGATCTCACGTCGTTCGTGAACCTCAGCGCATCCAGCATGGGCAGC
AGCGACAGCAGCGCCGTGTCCATCGGGTCCGAGAACCAACTCTTGATGGG
TATGGCGTTGTTGGGAAAACAGCGATAGGCGCCGGGCGAATTGTCGATGA
TAAATATCCTATTTAGGTCACTGCAGATGGCCGACAGGTCTTTGGTGTAG
GATCCGTAGTCGGGCGTGCAGTGCTGTCTGTAGTATCGCCTCCGGAGGAT
GTTTCGTCCGTTGTCCAGCTTGTCTGCCACCGCCGCTCCGTAAATCTCCA
TGCTGGCCGTGAAGACCACCAGATCGTACCACTGCGAGACCACGTCCAGG
AAGTAGTCCACATGCGGTCGCTTGTGCACGAAAAAGCGCACTGGATTCCG
ATCGATGGTCACTTTGACAGTGAAATCGTGCGGCGTGCCCGGCTTCACCG
TATTCCGGGGCATCGCATTGTGATGGGAGTGGATTAGCGTTTCGTCCAGG
TCCAGAACGAGGGTCTTGCGCTGCACCAGGCTCAGGCGGTGCCGCGAGAC
GGGTGACAACGGGAAGAGTTCGTATTTAACCGGTTGATACTGGATAAAAG
CTCGCACTTGGCGATTGAACATGAAACAAATGCATGTCCATACTTTTGAT
AGCAACAACAAAAGCGCACGGAATTTCATTTGCAGCAGCGAAATCATGTC
GACTGATAACT
BO04401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1696-PA | 732 | l(1)G0269-RA | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 3043 | CG1696-RA | 781..1509 | 747..19 | 3645 | 100 | Minus |
Dd-RB | 3034 | CG1696-RB | 781..1500 | 747..19 | 3500 | 98.8 | Minus |
Dd-RC | 2860 | CG1696-RC | 781..1137 | 747..391 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21321903..21322162 | 389..648 | 1300 | 100 | Plus |
X | 23542271 | X | 21321325..21321514 | 19..208 | 950 | 100 | Plus |
X | 23542271 | X | 21321637..21321820 | 208..391 | 920 | 100 | Plus |
X | 23542271 | X | 21323131..21323229 | 649..747 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:33:41 has no hits.
BO04401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:00 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:43 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:22 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 13..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:52 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 13..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:52 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21321321..21321513 | 13..207 | 98 | <- | Plus |
X | 21321637..21321819 | 208..390 | 100 | <- | Plus |
X | 21321905..21322162 | 391..648 | 100 | <- | Plus |
X | 21323131..21323233 | 649..752 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:22 Download gff for
BO04401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21192348..21192540 | 13..207 | 98 | <- | Plus |
arm_X | 21192664..21192846 | 208..390 | 100 | <- | Plus |
arm_X | 21192932..21193189 | 391..648 | 100 | <- | Plus |
arm_X | 21194158..21194260 | 649..752 | 98 | | Plus |
BO04401.complete Sequence
763 bp (763 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629742
> BO04401.complete
GAAGTTATCAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGC
TTTTGTTGTTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAAT
CGCCAAGTGCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTT
CCCGTTGTCACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGA
CCCTCGTTCTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCG
ATGCCCCGGAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAA
AGTGACCATCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGC
ATGTGGACTACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTC
TTCACGGCCAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGA
CAACGGACGAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGC
CCGACTACGGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTA
AATAGGATATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCC
CAACAACGCCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGG
CGCTGCTGTCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGAC
GTGAGATCGGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAG
CTTTCTAGACCAT
BO04401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 732 | CG1696-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Dd-RB | 723 | CG1696-PB | 1..720 | 17..745 | 3475 | 98.8 | Plus |
Dd-RC | 549 | CG1696-PC | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 3043 | CG1696-RA | 781..1509 | 17..745 | 3645 | 100 | Plus |
Dd-RB | 3034 | CG1696-RB | 781..1500 | 17..745 | 3475 | 98.8 | Plus |
Dd-RC | 2860 | CG1696-RC | 781..1137 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21321903..21322162 | 375..116 | 1300 | 100 | Minus |
X | 23542271 | X | 21321325..21321514 | 745..556 | 950 | 100 | Minus |
X | 23542271 | X | 21321637..21321820 | 556..373 | 920 | 100 | Minus |
X | 23542271 | X | 21323131..21323229 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:20 has no hits.
BO04401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:05 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0269-RA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:11 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0269-RA | 801..1537 | 12..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:36 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 781..1509 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:06 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0269-RA | 801..1537 | 12..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:39 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 781..1509 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:39 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21321321..21321513 | 557..747 | 98 | <- | Minus |
X | 21321637..21321819 | 374..556 | 100 | <- | Minus |
X | 21321905..21322162 | 116..373 | 100 | <- | Minus |
X | 21323131..21323229 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:36 Download gff for
BO04401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21192348..21192540 | 557..747 | 98 | <- | Minus |
arm_X | 21192664..21192846 | 374..556 | 100 | <- | Minus |
arm_X | 21192932..21193189 | 116..373 | 100 | <- | Minus |
arm_X | 21194158..21194256 | 17..115 | 100 | | Minus |
BO04401.pep Sequence
Translation from 16 to 763
> BO04401.pep
MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV
SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR
NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI
LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP
IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLWASFLDH
BO04401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-PA | 243 | CG1696-PA | 1..243 | 1..243 | 1293 | 100 | Plus |
Dd-PB | 240 | CG1696-PB | 1..240 | 1..243 | 1264 | 98.8 | Plus |
Dd-PC | 182 | CG1696-PC | 1..120 | 1..120 | 632 | 99.2 | Plus |
CG8584-PA | 293 | CG8584-PA | 72..282 | 37..240 | 520 | 50.9 | Plus |
CG12078-PB | 236 | CG12078-PB | 10..227 | 14..235 | 445 | 44.2 | Plus |
Dd-PC | 182 | CG1696-PC | 117..182 | 178..243 | 339 | 97 | Plus |