Clone BO04402 Report

Search the DGRC for BO04402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptHen1-RA
Protein status:BO04402.pep: validated full length
Sequenced Size:1207

Clone Sequence Records

BO04402.3prime Sequence

810 bp (699 high quality bases) assembled on 2005-12-01

> BO04402.3prime
ATGGTCTAGAAAGCTTGCTGATTCGGGGCCTTGATCCCAGCGTTCCTCCT
CTTGTTCCTGGTCGACCAAAGCATCATCCTGGGAGGAACGATCAGAAAAC
TTGTAAGGATCAGACCATTCCGATTCCTGATCGGAACTAACTATTAAAAC
ACACTCGTTCTCTACTGTTAGGTTATTTTCCAGTAGAAGTTCCTCGATAC
GTTCTTTGGTGGCACCCACGTGTTCTAGGCGATCCAATAAGAAAGCAATA
GGCATATTACAAGTGTCCTGATAAGTACCCTCCTCAATCTCGGAGGATTC
GAATTGTCTTTTGAAACGCTGAAGCTCTATTTGCACTTCGGTCCAGAGCT
TTTCCTTCTCGGTGCGCGTATCCACATAAAAAGGATATTCCACGGTATGA
ATTAGCTTGTAGGGAATTGATTCCTTATCGATATTGGGTTTGCTAACCAA
CGGGTTAACCAACTGCATCTCCAGCATATCCTTGCGAACGAATATGGCTA
TCTGTGAAACGGGGCCCACCGACTCGTATTCCTTAGGCGGATTACCCACT
CCCGTTAGGGAAAACATATAATTCGGGTACTTCTCCACAATGCCCAAACA
CCAGTTCTTGAACTCATCGCGTGACCACTCGAACTTGTGATCCTCGTGGC
GAAAACCATTTGGCAACAGCGGATTGAACCGCGTAAATATAACGTTGAAG
TCCGAGTTTGGTGTGCTGAAGACTACCAATTTCGGCTGCATGAAACCAAA
AATGTTGACTGGAATTTTGGCCAATACATCGTCGTAAACGTGGCTCGATT
AGTTCAATTG

BO04402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12367-PA 1176 CG12367-RA 400..1173 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-RA 1573 CG12367-RA 433..1223 810..19 3935 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12151629..12152402 792..19 3870 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:03:52 has no hits.

BO04402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:02 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12367-PA 383..1176 15..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:46 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12367-PA 383..1176 15..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:00 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 433..1227 14..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:21 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 433..1227 14..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:21 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12151614..12152406 14..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:00 Download gff for BO04402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8039119..8039911 14..810 99   Minus

BO04402.5prime Sequence

775 bp (626 high quality bases) assembled on 2005-11-29

> BO04402.5prime
GAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGA
CCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAG
CGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCA
GATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGC
TAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGAC
AAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGA
TTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGA
ATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCA
ATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGT
CAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAA
ACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAAT
GGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAA
GAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCC
TAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTT
TCACAGAAAGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGT
TAACCCGTTGGTTAGCAAACCCAAT

BO04402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12367-PA 1176 CG12367-RA 1..759 17..775 3770 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-RA 1573 CG12367-RA 51..809 17..775 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12151622..12151988 409..775 1820 99.7 Plus
2R 25286936 2R 12145760..12145983 17..240 1120 100 Plus
2R 25286936 2R 12151362..12151532 238..408 855 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:20:52 has no hits.

BO04402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:03 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12367-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:47 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12367-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:16 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 51..809 17..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:03 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 51..809 17..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:03 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12145760..12145981 17..238 100 -> Plus
2R 12151363..12151532 239..408 100 -> Plus
2R 12151622..12151988 409..775 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:16 Download gff for BO04402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8033265..8033486 17..238 100 -> Plus
arm_2R 8038868..8039037 239..408 100 -> Plus
arm_2R 8039127..8039493 409..775 99   Plus

BO04402.complete Sequence

1207 bp (1207 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629743

> BO04402.complete
GAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGA
CCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAG
CGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCA
GATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGC
TAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGAC
AAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGA
TTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGA
ATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCA
ATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGT
CAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAA
ACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAAT
GGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAA
GAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCC
TAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTT
TCACAGATAGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGT
TAACCCGTTGGTTAGCAAACCCAATATCGATAAGGAATCAATTCCCTACA
AGCTAATTCATACCGTGGAATATCCTTTTTATGTGGATACGCGCACCGAG
AAGGAAAAGCTCTGGACCGAAGTGCAAATAGAGCTTCAGCGTTTCAAAAG
ACAATTCGAATCCTCCGAGATTGAGGAGGGTACTTATCAGGACACTTGTA
ATATGCCTATTGCTTTCTTATTGGATCGCCTAGAACACGTGGGTGCCACC
AAAGAACGTATCGAGGAACTTCTACTGGAAAATAACCTAACAGTAGAGAA
CGAGTGTGTTTTAATAGTTAGTTCCGATCAGGAATCGGAATGGTCTGATC
CTTACAAGTTTTCTGATCGTTCCTCCCAGGATGATGCTTTGGTCGACCAG
GAACAAGAGGAGGAACGCTGGGATCAAGGCCCCGAATCAGCAAGCTTTCT
AGACCAT

BO04402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-RA 1176 CG12367-PA 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-RA 1573 CG12367-RA 51..1223 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12151622..12152402 409..1189 3905 100 Plus
2R 25286936 2R 12145760..12145983 17..240 1120 100 Plus
2R 25286936 2R 12151362..12151532 238..408 855 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:40:51 has no hits.

BO04402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:15 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
CG12367-RA 1..1176 17..1193 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:53 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
Pimet-RA 35..1211 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:59 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 58..1223 24..1191 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:15 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
CG12367-RA 35..1211 17..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:43 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 58..1223 24..1191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:43 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12145767..12145981 24..238 100 -> Plus
2R 12151363..12151532 239..408 100 -> Plus
2R 12151622..12152402 409..1191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:59 Download gff for BO04402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8033272..8033486 24..238 100 -> Plus
arm_2R 8038868..8039037 239..408 100 -> Plus
arm_2R 8039127..8039907 409..1191 99   Plus

BO04402.pep Sequence

Translation from 16 to 1207

> BO04402.pep
MFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILEDARWKDQIKKVV
EFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSVNPLVSDYIRSR
ASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDVLAKIPVNIFGF
MQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEWSRDEFKNWCLG
IVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDMLEMQLVNPLVS
KPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIELQRFKRQFESS
EIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLENNLTVENECVLI
VSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGPESASFLDH

BO04402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-PA 391 CG12367-PA 1..391 1..391 2049 100 Plus