Clone Sequence Records
BO04402.3prime Sequence
810 bp (699 high quality bases) assembled on 2005-12-01
> BO04402.3prime
ATGGTCTAGAAAGCTTGCTGATTCGGGGCCTTGATCCCAGCGTTCCTCCT
CTTGTTCCTGGTCGACCAAAGCATCATCCTGGGAGGAACGATCAGAAAAC
TTGTAAGGATCAGACCATTCCGATTCCTGATCGGAACTAACTATTAAAAC
ACACTCGTTCTCTACTGTTAGGTTATTTTCCAGTAGAAGTTCCTCGATAC
GTTCTTTGGTGGCACCCACGTGTTCTAGGCGATCCAATAAGAAAGCAATA
GGCATATTACAAGTGTCCTGATAAGTACCCTCCTCAATCTCGGAGGATTC
GAATTGTCTTTTGAAACGCTGAAGCTCTATTTGCACTTCGGTCCAGAGCT
TTTCCTTCTCGGTGCGCGTATCCACATAAAAAGGATATTCCACGGTATGA
ATTAGCTTGTAGGGAATTGATTCCTTATCGATATTGGGTTTGCTAACCAA
CGGGTTAACCAACTGCATCTCCAGCATATCCTTGCGAACGAATATGGCTA
TCTGTGAAACGGGGCCCACCGACTCGTATTCCTTAGGCGGATTACCCACT
CCCGTTAGGGAAAACATATAATTCGGGTACTTCTCCACAATGCCCAAACA
CCAGTTCTTGAACTCATCGCGTGACCACTCGAACTTGTGATCCTCGTGGC
GAAAACCATTTGGCAACAGCGGATTGAACCGCGTAAATATAACGTTGAAG
TCCGAGTTTGGTGTGCTGAAGACTACCAATTTCGGCTGCATGAAACCAAA
AATGTTGACTGGAATTTTGGCCAATACATCGTCGTAAACGTGGCTCGATT
AGTTCAATTG
BO04402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12367-PA | 1176 | CG12367-RA | 400..1173 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hen1-RA | 1573 | CG12367-RA | 433..1223 | 810..19 | 3935 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12151629..12152402 | 792..19 | 3870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:03:52 has no hits.
BO04402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:02 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-PA | 383..1176 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:46 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-PA | 383..1176 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:00 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 433..1227 | 14..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:21 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 433..1227 | 14..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:21 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12151614..12152406 | 14..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:00 Download gff for
BO04402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8039119..8039911 | 14..810 | 99 | | Minus |
BO04402.5prime Sequence
775 bp (626 high quality bases) assembled on 2005-11-29
> BO04402.5prime
GAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGA
CCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAG
CGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCA
GATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGC
TAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGAC
AAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGA
TTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGA
ATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCA
ATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGT
CAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAA
ACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAAT
GGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAA
GAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCC
TAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTT
TCACAGAAAGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGT
TAACCCGTTGGTTAGCAAACCCAAT
BO04402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12367-PA | 1176 | CG12367-RA | 1..759 | 17..775 | 3770 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hen1-RA | 1573 | CG12367-RA | 51..809 | 17..775 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12151622..12151988 | 409..775 | 1820 | 99.7 | Plus |
2R | 25286936 | 2R | 12145760..12145983 | 17..240 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 12151362..12151532 | 238..408 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:20:52 has no hits.
BO04402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:03 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:47 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:26:16 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 51..809 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:03 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 51..809 | 17..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:03 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12145760..12145981 | 17..238 | 100 | -> | Plus |
2R | 12151363..12151532 | 239..408 | 100 | -> | Plus |
2R | 12151622..12151988 | 409..775 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:26:16 Download gff for
BO04402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8033265..8033486 | 17..238 | 100 | -> | Plus |
arm_2R | 8038868..8039037 | 239..408 | 100 | -> | Plus |
arm_2R | 8039127..8039493 | 409..775 | 99 | | Plus |
BO04402.complete Sequence
1207 bp (1207 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629743
> BO04402.complete
GAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGA
CCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAG
CGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCA
GATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGC
TAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGAC
AAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGA
TTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGA
ATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCA
ATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGT
CAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAA
ACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAAT
GGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAA
GAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCC
TAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTT
TCACAGATAGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGT
TAACCCGTTGGTTAGCAAACCCAATATCGATAAGGAATCAATTCCCTACA
AGCTAATTCATACCGTGGAATATCCTTTTTATGTGGATACGCGCACCGAG
AAGGAAAAGCTCTGGACCGAAGTGCAAATAGAGCTTCAGCGTTTCAAAAG
ACAATTCGAATCCTCCGAGATTGAGGAGGGTACTTATCAGGACACTTGTA
ATATGCCTATTGCTTTCTTATTGGATCGCCTAGAACACGTGGGTGCCACC
AAAGAACGTATCGAGGAACTTCTACTGGAAAATAACCTAACAGTAGAGAA
CGAGTGTGTTTTAATAGTTAGTTCCGATCAGGAATCGGAATGGTCTGATC
CTTACAAGTTTTCTGATCGTTCCTCCCAGGATGATGCTTTGGTCGACCAG
GAACAAGAGGAGGAACGCTGGGATCAAGGCCCCGAATCAGCAAGCTTTCT
AGACCAT
BO04402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hen1-RA | 1176 | CG12367-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hen1-RA | 1573 | CG12367-RA | 51..1223 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12151622..12152402 | 409..1189 | 3905 | 100 | Plus |
2R | 25286936 | 2R | 12145760..12145983 | 17..240 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 12151362..12151532 | 238..408 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:40:51 has no hits.
BO04402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:15 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-RA | 1..1176 | 17..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:53 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pimet-RA | 35..1211 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:59 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 58..1223 | 24..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:15 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12367-RA | 35..1211 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:43 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hen1-RA | 58..1223 | 24..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:43 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12145767..12145981 | 24..238 | 100 | -> | Plus |
2R | 12151363..12151532 | 239..408 | 100 | -> | Plus |
2R | 12151622..12152402 | 409..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:59 Download gff for
BO04402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8033272..8033486 | 24..238 | 100 | -> | Plus |
arm_2R | 8038868..8039037 | 239..408 | 100 | -> | Plus |
arm_2R | 8039127..8039907 | 409..1191 | 99 | | Plus |
BO04402.pep Sequence
Translation from 16 to 1207
> BO04402.pep
MFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILEDARWKDQIKKVV
EFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSVNPLVSDYIRSR
ASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDVLAKIPVNIFGF
MQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEWSRDEFKNWCLG
IVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDMLEMQLVNPLVS
KPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIELQRFKRQFESS
EIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLENNLTVENECVLI
VSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGPESASFLDH
BO04402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hen1-PA | 391 | CG12367-PA | 1..391 | 1..391 | 2049 | 100 | Plus |