Clone BO04403 Report

Search the DGRC for BO04403

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG14502-RA
Protein status:BO04403.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO04403.5prime Sequence

596 bp (595 high quality bases) assembled on 2005-11-29

> BO04403.5prime
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCGCAAGCTTTCTAGACC

BO04403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PA 567 CG14502-RA 1..564 17..580 2820 100 Plus
CG14502-PB 567 CG14502-RB 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..593 17..580 2820 100 Plus
CG14502-RC 1269 CG14502-RC 588..1151 17..580 2820 100 Plus
CG14502-RB 2224 CG14502-RB 1543..2106 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294594 244..580 1685 100 Plus
2R 25286936 2R 18294010..18294166 90..246 785 100 Plus
2R 25286936 2R 18293875..18293949 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:03:12 has no hits.

BO04403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:04 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:49 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 17..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:13 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:06 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:06 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18293875..18293949 17..91 100 -> Plus
2R 18294012..18294164 92..244 100 -> Plus
2R 18294259..18294594 245..580 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:13 Download gff for BO04403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181380..14181454 17..91 100 -> Plus
arm_2R 14181517..14181669 92..244 100 -> Plus
arm_2R 14181764..14182099 245..580 100   Plus

BO04403.3prime Sequence

596 bp (595 high quality bases) assembled on 2005-12-01

> BO04403.3prime
ATGGTCTAGAAAGCTTGCGACAAGTTTTGTGGTTATCTTCACAATCAGAA
TGAATCCCCAATCCACGGGATTCGTCAAGGTGAAATTGACCTTGTAGTAG
CCCTCGGGAACCATATCCGGAAAACCATCACTGTTTGCCACACACTTTTC
CAACACGTACGTATCCTGGGGCCACGGTGGCTCGAATTTGCCATCAAACT
TGATGAGATTGGAACAATCGCCCAGATTTGGTAGCACTACGTTCTTATAG
TGGCTGTTCATGAACTCAACATATGGCTGTTTCGGGATGCTAAACGGCAT
AATCTTGTAGTCATTTTCGTCCCCGGAGGTGCTTCGATAGGCCATTGCTT
CAACCATGGTATTATCTTCTGGTGTGTACTTAAATTCAATGTTGCCAGAA
AGGGCATATTCTCCCCTACCGACTCGCTCCACTTTGGCCGCAATCTTCAG
CTTAGTCTCATCCGTGGTATAGGTTTCAATGGACAGCGGTTCGTAGTCCC
ACTTGCGCTTGCCATTGCATTGATCAACTATCAAAAGTATTAATACTCCT
CCAATGATGGGCAGTAGCAAACGTGGTAGCATGTCGACTGATAACT

BO04403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PA 567 CG14502-RA 1..564 582..19 2820 100 Minus
CG14502-PB 567 CG14502-RB 1..564 582..19 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..593 582..19 2820 100 Minus
CG14502-RC 1269 CG14502-RC 588..1151 582..19 2820 100 Minus
CG14502-RB 2224 CG14502-RB 1543..2106 582..19 2820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294594 355..19 1685 100 Minus
2R 25286936 2R 18294010..18294166 509..353 785 100 Minus
2R 25286936 2R 18293875..18293949 582..508 375 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:14:48 has no hits.

BO04403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:03 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 16..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:48 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-PB 1..567 16..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:33 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 19..582 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:26 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 19..582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:26 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18293875..18293949 508..582 100 -> Minus
2R 18294012..18294164 355..507 100 -> Minus
2R 18294259..18294594 19..354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:33 Download gff for BO04403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181380..14181454 508..582 100 -> Minus
arm_2R 14181517..14181669 355..507 100 -> Minus
arm_2R 14181764..14182099 19..354 100   Minus

BO04403.complete Sequence

598 bp (598 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629744

> BO04403.complete
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCGCAAGCTTTCTAGACCAT

BO04403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 567 CG14502-PD 1..564 17..580 2820 100 Plus
CG14502-RC 567 CG14502-PC 1..564 17..580 2820 100 Plus
CG14502-RB 567 CG14502-PB 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-RD 711 CG14502-RD 30..593 17..580 2820 100 Plus
CG14502-RC 1269 CG14502-RC 588..1151 17..580 2820 100 Plus
CG14502-RB 2224 CG14502-RB 1543..2106 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18294258..18294594 244..580 1685 100 Plus
2R 25286936 2R 18294010..18294166 90..246 785 100 Plus
2R 25286936 2R 18293875..18293949 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:59:43 has no hits.

BO04403.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:07 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1..567 17..583 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:13 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:07 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:07 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:56 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
CG14502-RB 1543..2106 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:56 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18293875..18293949 17..91 100 -> Plus
2R 18294012..18294164 92..244 100 -> Plus
2R 18294259..18294594 245..582 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:07 Download gff for BO04403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14181764..14182099 245..582 99   Plus
arm_2R 14181380..14181454 17..91 100 -> Plus
arm_2R 14181517..14181669 92..244 100 -> Plus

BO04403.pep Sequence

Translation from 16 to 598

> BO04403.pep
MLPRLLLPIIGGVLILLIVDQCNGKRKWDYEPLSIETYTTDETKLKIAAK
VERVGRGEYALSGNIEFKYTPEDNTMVEAMAYRSTSGDENDYKIMPFSIP
KQPYVEFMNSHYKNVVLPNLGDCSNLIKFDGKFEPPWPQDTYVLEKCVAN
SDGFPDMVPEGYYKVNFTLTNPVDWGFILIVKITTKLVASFLDH

BO04403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14502-PD 188 CG14502-PD 1..188 1..188 1007 100 Plus
CG14502-PC 188 CG14502-PC 1..188 1..188 1007 100 Plus
CG14502-PB 188 CG14502-PB 1..188 1..188 1007 100 Plus
CG14502-PA 188 CG14502-PA 1..188 1..188 1007 100 Plus
CG18539-PB 185 CG18539-PB 10..185 13..188 543 49.4 Plus