Clone Sequence Records
BO04403.5prime Sequence
596 bp (595 high quality bases) assembled on 2005-11-29
> BO04403.5prime
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCGCAAGCTTTCTAGACC
BO04403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PA | 567 | CG14502-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
CG14502-PB | 567 | CG14502-RB | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..593 | 17..580 | 2820 | 100 | Plus |
CG14502-RC | 1269 | CG14502-RC | 588..1151 | 17..580 | 2820 | 100 | Plus |
CG14502-RB | 2224 | CG14502-RB | 1543..2106 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294594 | 244..580 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 18294010..18294166 | 90..246 | 785 | 100 | Plus |
2R | 25286936 | 2R | 18293875..18293949 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:03:12 has no hits.
BO04403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:04 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:49 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 17..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:13 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:06 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:06 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293875..18293949 | 17..91 | 100 | -> | Plus |
2R | 18294012..18294164 | 92..244 | 100 | -> | Plus |
2R | 18294259..18294594 | 245..580 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:13 Download gff for
BO04403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181380..14181454 | 17..91 | 100 | -> | Plus |
arm_2R | 14181517..14181669 | 92..244 | 100 | -> | Plus |
arm_2R | 14181764..14182099 | 245..580 | 100 | | Plus |
BO04403.3prime Sequence
596 bp (595 high quality bases) assembled on 2005-12-01
> BO04403.3prime
ATGGTCTAGAAAGCTTGCGACAAGTTTTGTGGTTATCTTCACAATCAGAA
TGAATCCCCAATCCACGGGATTCGTCAAGGTGAAATTGACCTTGTAGTAG
CCCTCGGGAACCATATCCGGAAAACCATCACTGTTTGCCACACACTTTTC
CAACACGTACGTATCCTGGGGCCACGGTGGCTCGAATTTGCCATCAAACT
TGATGAGATTGGAACAATCGCCCAGATTTGGTAGCACTACGTTCTTATAG
TGGCTGTTCATGAACTCAACATATGGCTGTTTCGGGATGCTAAACGGCAT
AATCTTGTAGTCATTTTCGTCCCCGGAGGTGCTTCGATAGGCCATTGCTT
CAACCATGGTATTATCTTCTGGTGTGTACTTAAATTCAATGTTGCCAGAA
AGGGCATATTCTCCCCTACCGACTCGCTCCACTTTGGCCGCAATCTTCAG
CTTAGTCTCATCCGTGGTATAGGTTTCAATGGACAGCGGTTCGTAGTCCC
ACTTGCGCTTGCCATTGCATTGATCAACTATCAAAAGTATTAATACTCCT
CCAATGATGGGCAGTAGCAAACGTGGTAGCATGTCGACTGATAACT
BO04403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PA | 567 | CG14502-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
CG14502-PB | 567 | CG14502-RB | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..593 | 582..19 | 2820 | 100 | Minus |
CG14502-RC | 1269 | CG14502-RC | 588..1151 | 582..19 | 2820 | 100 | Minus |
CG14502-RB | 2224 | CG14502-RB | 1543..2106 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294594 | 355..19 | 1685 | 100 | Minus |
2R | 25286936 | 2R | 18294010..18294166 | 509..353 | 785 | 100 | Minus |
2R | 25286936 | 2R | 18293875..18293949 | 582..508 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:14:48 has no hits.
BO04403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:03 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 16..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:48 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-PB | 1..567 | 16..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:33 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 19..582 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:26 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 19..582 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:26 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293875..18293949 | 508..582 | 100 | -> | Minus |
2R | 18294012..18294164 | 355..507 | 100 | -> | Minus |
2R | 18294259..18294594 | 19..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:33 Download gff for
BO04403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181380..14181454 | 508..582 | 100 | -> | Minus |
arm_2R | 14181517..14181669 | 355..507 | 100 | -> | Minus |
arm_2R | 14181764..14182099 | 19..354 | 100 | | Minus |
BO04403.complete Sequence
598 bp (598 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629744
> BO04403.complete
GAAGTTATCAGTCGACATGCTACCACGTTTGCTACTGCCCATCATTGGAG
GAGTATTAATACTTTTGATAGTTGATCAATGCAATGGCAAGCGCAAGTGG
GACTACGAACCGCTGTCCATTGAAACCTATACCACGGATGAGACTAAGCT
GAAGATTGCGGCCAAAGTGGAGCGAGTCGGTAGGGGAGAATATGCCCTTT
CTGGCAACATTGAATTTAAGTACACACCAGAAGATAATACCATGGTTGAA
GCAATGGCCTATCGAAGCACCTCCGGGGACGAAAATGACTACAAGATTAT
GCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT
ATAAGAACGTAGTGCTACCAAATCTGGGCGATTGTTCCAATCTCATCAAG
TTTGATGGCAAATTCGAGCCACCGTGGCCCCAGGATACGTACGTGTTGGA
AAAGTGTGTGGCAAACAGTGATGGTTTTCCGGATATGGTTCCCGAGGGCT
ACTACAAGGTCAATTTCACCTTGACGAATCCCGTGGATTGGGGATTCATT
CTGATTGTGAAGATAACCACAAAACTTGTCGCAAGCTTTCTAGACCAT
BO04403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 567 | CG14502-PD | 1..564 | 17..580 | 2820 | 100 | Plus |
CG14502-RC | 567 | CG14502-PC | 1..564 | 17..580 | 2820 | 100 | Plus |
CG14502-RB | 567 | CG14502-PB | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-RD | 711 | CG14502-RD | 30..593 | 17..580 | 2820 | 100 | Plus |
CG14502-RC | 1269 | CG14502-RC | 588..1151 | 17..580 | 2820 | 100 | Plus |
CG14502-RB | 2224 | CG14502-RB | 1543..2106 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18294258..18294594 | 244..580 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 18294010..18294166 | 90..246 | 785 | 100 | Plus |
2R | 25286936 | 2R | 18293875..18293949 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:59:43 has no hits.
BO04403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:07 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1..567 | 17..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:13 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:07 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:07 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:56 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14502-RB | 1543..2106 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:56 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18293875..18293949 | 17..91 | 100 | -> | Plus |
2R | 18294012..18294164 | 92..244 | 100 | -> | Plus |
2R | 18294259..18294594 | 245..582 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:07 Download gff for
BO04403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14181764..14182099 | 245..582 | 99 | | Plus |
arm_2R | 14181380..14181454 | 17..91 | 100 | -> | Plus |
arm_2R | 14181517..14181669 | 92..244 | 100 | -> | Plus |
BO04403.pep Sequence
Translation from 16 to 598
> BO04403.pep
MLPRLLLPIIGGVLILLIVDQCNGKRKWDYEPLSIETYTTDETKLKIAAK
VERVGRGEYALSGNIEFKYTPEDNTMVEAMAYRSTSGDENDYKIMPFSIP
KQPYVEFMNSHYKNVVLPNLGDCSNLIKFDGKFEPPWPQDTYVLEKCVAN
SDGFPDMVPEGYYKVNFTLTNPVDWGFILIVKITTKLVASFLDH
BO04403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14502-PD | 188 | CG14502-PD | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PC | 188 | CG14502-PC | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PB | 188 | CG14502-PB | 1..188 | 1..188 | 1007 | 100 | Plus |
CG14502-PA | 188 | CG14502-PA | 1..188 | 1..188 | 1007 | 100 | Plus |
CG18539-PB | 185 | CG18539-PB | 10..185 | 13..188 | 543 | 49.4 | Plus |