Clone Sequence Records
BO04404.3prime Sequence
896 bp (793 high quality bases) assembled on 2005-12-01
> BO04404.3prime
ATGGTCTAGAAAGCTTGCGCAGGAACACTTGTTCTTGGCATCCGATCCGG
TTGCATCGGCCGCGCTCAAGTTGAACTTGTCGCCATCGGCCAGATCGGCA
GATATCAGCTTATCGTTGATGAGTATCTTATTCACGAGGGCACGAGCTGC
CTCATCGATGTTGATATTCTCCTTGGCGGATGTCTCAAACCAACCGGCAA
ATCCGTTCTCCCTCACATACTCATCCATCTTCTCGGGCTGCGTTATGATG
CCCTGCTTTTCCTGGTCGCATTTATTGGCCAGCAGGATGCACGGAATGGG
ACTGCCGTCCGGCAGCTGCACCTTGGAGTCTAGATCTTCCTTCCACTTGC
TCACGCAATCGAAAGTCCCACTGCGAGTCACATCAAAAACGATGAACGCG
CCCACCGCCTCCTTGTAGTAGACACGGGTCATGTTGCCAAACCTCTCCTG
ACCGGCGATATCCCACAGCTGGAGGCGCACTATCGTATTGGCGTCCCACT
GCAGCACTTTCAGGGCGAAGTCCACGCCGATGGTGGCCCTGTAGTTCTGG
CTGAAGAACTGGTGCACATAGCGCTTAATGAAGGACGTCTTGCCGGTGCC
CAGTTCACCAATGACTAGAATCTTGTACAGATGCTCGCGCTTATCGCTGG
TGGATGTCATGATGGCTCCGTTGTGCAGGTATCCGTTGTTCCTGTTGATG
TCCATGTGGTTACGGTTGACTCCCGCGGGCATGACCGTGGTCAGTTGCAG
CGCCTCTATGGCGCCGAGATCCAACTCCGGCTTGGGCTCGGCGTAGGCCG
GAGAAGCACTTCGCAGCGAGAACTGGGAGGAGCTGAGCGGCGGATGCAGC
TGGGTCTCCGCGGACGGGAAACAGATCTGGCGGCGCACGAAGATGG
BO04404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8024-PE | 1167 | ltd-RE | 287..1164 | 896..19 | 4390 | 100 | Minus |
| CG8024-PC | 1167 | ltd-RC | 287..1164 | 896..19 | 4390 | 100 | Minus |
| CG8024-PD | 669 | ltd-RD | 18..666 | 667..19 | 3245 | 100 | Minus |
| CG8024-PA | 1158 | ltd-RA | 508..1155 | 666..19 | 3240 | 100 | Minus |
| CG8024-PB | 2061 | ltd-RB | 1411..2058 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 897..1774 | 896..19 | 4390 | 100 | Minus |
| ltd-RE | 2156 | CG8024-RE | 706..1583 | 896..19 | 4390 | 100 | Minus |
| ltd-RD | 1448 | CG8024-RD | 227..875 | 667..19 | 3245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9178830..9179225 | 271..666 | 1980 | 100 | Plus |
| 2R | 25286936 | 2R | 9185216..9185446 | 666..896 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 9178606..9178749 | 127..270 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 9178437..9178546 | 19..128 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:15:06 has no hits.
BO04404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:05 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-PC | 287..1167 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:51 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-PC | 287..1167 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:36 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 706..1589 | 12..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:32 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 706..1589 | 12..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:32 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9185217..9185446 | 667..896 | 100 | | Plus |
| 2R | 9178830..9179225 | 271..666 | 100 | <- | Plus |
| 2R | 9178431..9178544 | 12..126 | 96 | <- | Plus |
| 2R | 9178606..9178749 | 127..270 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:36 Download gff for
BO04404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5065936..5066049 | 12..126 | 96 | <- | Plus |
| arm_2R | 5066111..5066254 | 127..270 | 100 | <- | Plus |
| arm_2R | 5066335..5066730 | 271..666 | 100 | <- | Plus |
| arm_2R | 5072722..5072951 | 667..896 | 100 | | Plus |
BO04404.5prime Sequence
854 bp (744 high quality bases) assembled on 2005-11-29
> BO04404.5prime
GAAGTTATCAGTCGACATGGCAACCGGCGTCATCCAGAGTAGCGTTGTCT
CCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCC
GCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTC
GGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTC
AGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGA
CCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTC
GCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGC
TGCATCCGCCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGCTTCTCCG
GCCTACGCCGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCT
GCAACTGACCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACA
TCAACAGGAACAACGGATACCTGCACAACGGAGCCATCATGACATCCACC
AGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGG
CACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCC
AGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAG
TGGGACGCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCA
GGAGAGGTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCG
CGTTCTTCGTTTTTTGATGTGACTCCGCAGTGGGACTTTCGATTGCGTGA
GCAA
BO04404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8024-PE | 1167 | ltd-RE | 1..798 | 17..814 | 3965 | 99.8 | Plus |
| CG8024-PC | 1167 | ltd-RC | 1..798 | 17..814 | 3965 | 99.8 | Plus |
| CG8024-PD | 669 | ltd-RD | 18..300 | 532..814 | 1390 | 99.6 | Plus |
| CG8024-PA | 1158 | ltd-RA | 508..789 | 533..814 | 1385 | 99.6 | Plus |
| CG8024-PB | 2061 | ltd-RB | 1411..1692 | 533..814 | 1385 | 99.6 | Plus |
| CG8024-PD | 669 | ltd-RD | 310..338 | 826..854 | 145 | 100 | Plus |
| CG8024-PE | 1167 | ltd-RE | 808..836 | 826..854 | 145 | 100 | Plus |
| CG8024-PC | 1167 | ltd-RC | 808..836 | 826..854 | 145 | 100 | Plus |
| CG8024-PA | 1158 | ltd-RA | 799..827 | 826..854 | 145 | 100 | Plus |
| CG8024-PB | 2061 | ltd-RB | 1702..1730 | 826..854 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1446 | 16..854 | 4130 | 99.6 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1255 | 16..854 | 4130 | 99.6 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..547 | 532..854 | 1550 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 9178906..9179225 | 854..533 | 1495 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:05:54 has no hits.
BO04404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:06 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-PE | 1..834 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:53 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-PE | 1..834 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:46 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1253 | 11..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:20 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1253 | 11..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:20 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178908..9179225 | 533..852 | 99 | <- | Minus |
| 2R | 9185217..9185737 | 11..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:46 Download gff for
BO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066413..5066730 | 533..852 | 99 | <- | Minus |
| arm_2R | 5072722..5073242 | 11..532 | 99 | | Minus |
BO04404.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629745
> BO04404.complete
GAAGTTATCAGTCGACATGGCAACCGGCGTCATCCAGAGTAGCGTTGTCT
CCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACAGGAGTCC
GCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATCAGCTCTC
GGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACGGATCTTC
AGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAGACACCGA
CCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCAAGGAGTC
GCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAGACCCAGC
TGCATCCGCCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGCTTCTCCG
GCCTACGCCGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAGAGGCGCT
GCAACTGACCACGGTCATGCCCGCGGGAGTCAACCGTAACCACATGGACA
TCAACAGGAACAACGGATACCTGCACAACGGAGCCATCATGACATCCACC
AGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGG
CACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCC
AGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAG
TGGGACGCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCA
GGAGAGGTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCG
CGTTCATCGTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGAGC
AAGTGGAAGGAAGATCTAGACTCCAAGGTGCAGCTGCCGGACGGCAGTCC
CATTCCGTGCATCCTGCTGGCCAATAAATGCGACCAGGAAAAGCAGGGCA
TCATAACGCAGCCCGAGAAGATGGATGAGTATGTGAGGGAGAACGGATTT
GCCGGTTGGTTTGAGACATCCGCCAAGGAGAATATCAACATCGATGAGGC
AGCTCGTGCCCTCGTGAATAAGATACTCATCAACGATAAGCTGATATCTG
CCGATCTGGCCGATGGCGACAAGTTCAACTTGAGCGCGGCCGATGCAACC
GGATCGGATGCCAAGAACAAGTGTTCCTGCGCAAGCTTTCTAGACCAT
BO04404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 1167 | CG8024-PC | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| ltd-RE | 1167 | CG8024-PE | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| ltd-RD | 669 | CG8024-PD | 18..666 | 532..1180 | 3245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1774 | 16..1180 | 5825 | 100 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1583 | 16..1180 | 5825 | 100 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..875 | 532..1180 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 9178830..9179225 | 928..533 | 1980 | 100 | Minus |
| 2R | 25286936 | 2R | 9178606..9178749 | 1072..929 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 9178437..9178546 | 1180..1071 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:55 has no hits.
BO04404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:58 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:32 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 625..1799 | 11..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:28 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 420..1583 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:58 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 625..1799 | 11..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:48 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 420..1583 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:48 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178606..9178749 | 929..1072 | 100 | <- | Minus |
| 2R | 9178433..9178544 | 1073..1182 | 98 | <- | Minus |
| 2R | 9178830..9179225 | 533..928 | 100 | <- | Minus |
| 2R | 9185217..9185732 | 17..532 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:28 Download gff for
BO04404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5065938..5066049 | 1073..1182 | 98 | <- | Minus |
| arm_2R | 5066111..5066254 | 929..1072 | 100 | <- | Minus |
| arm_2R | 5066335..5066730 | 533..928 | 100 | <- | Minus |
| arm_2R | 5072722..5073237 | 17..532 | 100 | | Minus |
BO04404.pep Sequence
Translation from 16 to 1198
> BO04404.pep
MATGVIQSSVVSTSAGRQNICDCLEQESAGLVKALPKSKSADQLSELTCA
CLRCQYLATDLQHPNTQSGHLPVEHRHRPVSSGSGSLGALSAKESPIFVR
RQICFPSAETQLHPPLSSSQFSLRSASPAYAEPKPELDLGAIEALQLTTV
MPAGVNRNHMDINRNNGYLHNGAIMTSTSDKREHLYKILVIGELGTGKTS
FIKRYVHQFFSQNYRATIGVDFALKVLQWDANTIVRLQLWDIAGQERFGN
MTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCIL
LANKCDQEKQGIITQPEKMDEYVRENGFAGWFETSAKENINIDEAARALV
NKILINDKLISADLADGDKFNLSAADATGSDAKNKCSCASFLDH
BO04404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-PC | 388 | CG8024-PC | 1..388 | 1..388 | 2016 | 100 | Plus |
| ltd-PE | 388 | CG8024-PE | 1..388 | 1..388 | 2016 | 100 | Plus |
| ltd-PD | 222 | CG8024-PD | 3..222 | 169..388 | 1129 | 98.6 | Plus |
| ltd-PJ | 214 | CG8024-PJ | 1..214 | 175..388 | 1118 | 100 | Plus |
| ltd-PH | 214 | CG8024-PH | 1..214 | 175..388 | 1118 | 100 | Plus |
