Clone BO04405 Report

Search the DGRC for BO04405

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG15117-RA
Protein status:BO04405.pep: Imported from assembly
Sequenced Size:2002

Clone Sequence Records

BO04405.3prime Sequence

852 bp (830 high quality bases) assembled on 2005-12-01

> BO04405.3prime
ATGGTCTAGAAAGCTTGCGGATATCAGATCGGCGATGTAGGTGAAGAGAT
CTTCCGGGAAGCTGCACTGGTCCAAATCTCTGCCCAATGCAAAGTATCTT
TTGCGAAGGAGATGAGCTGCCGCTTTGGGTTGGCGCGCGCGGGTGAAAAC
ACCCTTTTTATTGCCTCCCACGCGGGTGTAGCTTTGTGCTGTCTTAAAGT
CCGCAAAGTTCCATACAAACTCGCCAATGAACCAGCCCTTCTTGCGCAGC
TCATCGAAGGCCTTAAAATGGCGGGAAAACACCTCCGTCTGGAACTCCTC
CGACCACACATAAGCAGGTTGCATATGCAAGCCCTCCAAGGTATCTGCTC
CATATTCAGACATGATAATGGGTTTGTTGTAGCGTTTATTCCAGGCAATG
GCCTCGTCGATCACATTCTGGGTTATCATGTCCAGACGTCCGGCATTTGA
GTACCAGGCATTGTAGCGATTGAAGCTGATGATGTCCAGAGAGCGGCCCG
CCTTATCCTGGGTGTTTGAAACAGCAATGGCAGCCGTGATGGGTCGGGTT
TTATCCAGAGACCGTGTGAAGTTGGCCACTAATTCAAAGTACGAATCCGC
ACTCACGCTACCAGTCCGGGGTTCATTGGCAATGGACCACATCACCACAC
TTGGATGATTCCGATCCCGATGGATGAGCTGCTCCAGCGACGATTTGTGC
TTGCCCAGCAGCTCCTGGCTAAAGTTTTCTGTATCCACACTGGGACATTC
GTCGATGATCATGATGCCGTGCTCATCCGCAAACTGCATGGACTCCTCGG
AGTAGGGATAATGCGACGTGCGATACGCATTCGCTCCAATCCACTTGAGC
AG

BO04405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PB 2013 CG15117-RB 1177..2010 852..19 4170 100 Minus
CG15117-PA 1971 CG15117-RA 1135..1968 852..19 4170 100 Minus
CG15117-PC 1971 CG15117-RC 1135..1968 852..19 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RF 2707 CG15117-RF 1655..2488 852..19 4170 100 Minus
CG15117-RE 2380 CG15117-RE 1328..2161 852..19 4170 100 Minus
CG15117-RD 2191 CG15117-RD 1139..1972 852..19 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19122910..19123087 322..499 890 100 Plus
2R 25286936 2R 19122450..19122613 19..182 820 100 Plus
2R 25286936 2R 19123295..19123438 584..727 720 100 Plus
2R 25286936 2R 19122671..19122811 182..322 705 100 Plus
2R 25286936 2R 19123499..19123623 728..852 625 100 Plus
2R 25286936 2R 19123147..19123232 498..583 430 100 Plus
3R 32079331 3R 31770281..31770486 647..852 325 77.2 Plus
Blast to na_te.dros performed on 2015-02-13 02:03:38 has no hits.

BO04405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:07 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PC 1135..1971 15..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:54 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PC 1135..1971 15..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:15 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RD 1139..1980 11..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:03 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RD 1139..1980 11..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:03 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19122442..19122613 11..182 97 <- Plus
2R 19122672..19122810 183..321 100 <- Plus
2R 19122910..19123086 322..498 100 <- Plus
2R 19123148..19123232 499..583 100 <- Plus
2R 19123295..19123438 584..727 100 <- Plus
2R 19123499..19123623 728..852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:15 Download gff for BO04405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15010177..15010315 183..321 100 <- Plus
arm_2R 15010415..15010591 322..498 100 <- Plus
arm_2R 15010653..15010737 499..583 100 <- Plus
arm_2R 15010800..15010943 584..727 100 <- Plus
arm_2R 15011004..15011128 728..852 100   Plus
arm_2R 15009947..15010118 11..182 97 <- Plus

BO04405.5prime Sequence

898 bp (753 high quality bases) assembled on 2005-12-01

> BO04405.5prime
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAAGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTG

BO04405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PA 1971 CG15117-RA 1..882 17..898 4385 99.8 Plus
CG15117-PB 2013 CG15117-RB 45..924 19..898 4375 99.8 Plus
CG15117-PC 1971 CG15117-RC 5..882 21..898 4365 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 2487 CG15117-RA 301..1182 17..898 4395 99.9 Plus
CG15117-RC 2211 CG15117-RC 20..906 12..898 4390 99.7 Plus
CG15117-RB 2338 CG15117-RB 154..1033 19..898 4385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19124537..19124941 424..20 2025 100 Minus
2R 25286936 2R 19124105..19124418 737..424 1570 100 Minus
2R 25286936 2R 19123876..19124037 898..737 795 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 00:05:09 has no hits.

BO04405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:08 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:56 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:28 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 291..1182 7..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:11 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 291..1182 7..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:11 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19124537..19124946 12..424 99   Minus
2R 19123876..19124036 738..898 99 <- Minus
2R 19124105..19124417 425..737 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:28 Download gff for BO04405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15011381..15011541 738..898 99 <- Minus
arm_2R 15011610..15011922 425..737 100 <- Minus
arm_2R 15012042..15012451 12..424 99   Minus

BO04405.complete Sequence

2002 bp assembled on 2008-08-14

GenBank Submission: FJ629746

> BO04405.complete
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAA
GCCCTGGTGGCCCTACCTAATGCATTCCGAACCGGGTTATCTGTACCAGC
TGGAGATCAAATTGCTGGCGACCAACGATGAGCTCCTGGATGTCTACCGA
CTGAAAGTGGGAATACGCACACTAAGTTGGAACAGCCAGCAGTTCCTGAT
CAACGGCAAGCCCGTTTACTTCCGTGGTTTTGGACGACACGAAGATTCGG
ATATCAGGGGTAAGGGTCTGGACAATGCACTGATGGTGCGCGATTTCAAT
CTGCTCAAGTGGATTGGAGCGAATGCGTATCGCACGTCGCATTATCCCTA
CTCCGAGGAGTCCATGCAGTTTGCGGATGAGCACGGCATCATGATCATCG
ACGAATGTCCCAGTGTGGATACAGAAAACTTTAGCCAGGAGCTGCTGGGC
AAGCACAAATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCC
AAGTGTGGTGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGA
GTGCGGATTCGTACTTTGAATTAGTGGCCAACTTCACACGGTCTCTGGAT
AAAACCCGACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAA
GGCGGGCCGCTCTCTGGACATCATCAGCTTCAATCGCTACAATGCCTGGT
ACTCAAATGCCGGACGTCTGGACATGATAACCCAGAATGTGATCGACGAG
GCCATTGCCTGGAATAAACGCTACAACAAACCCATTATCATGTCTGAATA
TGGAGCAGATACCTTGGAGGGCTTGCATATGCAACCTGCTTATGTGTGGT
CGGAGGAGTTCCAGACGGAGGTGTTTTCCCGCCATTTTAAGGCCTTCGAT
GAGCTGCGCAAGAAGGGCTGGTTCATTGGCGAGTTTGTATGGAACTTTGC
GGACTTTAAGACAGCACAAAGCTACACCCGCGTGGGAGGCAATAAAAAGG
GTGTTTTCACCCGCGCGCGCCAACCCAAAGCGGCAGCTCATCTCCTTCGC
AAAAGATACTTTGCATTGGGCAGAGATTTGGACCAGTGCAGCTTCCCGGA
AGATCTCTTCACCTACATCGCCGATCTGATATCCGCAAGCTTTCTAGACC
AT

BO04405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 1971 CG15117-PA 1..1968 17..1984 9840 100 Plus
CG15117-RB 2013 CG15117-PB 45..2010 19..1984 9830 100 Plus
CG15117-RC 1971 CG15117-PC 1..1968 17..1984 9825 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-RA 2487 CG15117-RA 301..2268 17..1984 9840 100 Plus
CG15117-RC 2211 CG15117-RC 20..1992 12..1984 9835 99.9 Plus
CG15117-RB 2338 CG15117-RB 154..2119 19..1984 9830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19123499..19124037 1275..737 2695 100 Minus
2R 25286936 2R 19124537..19124941 424..20 2025 100 Minus
2R 25286936 2R 19124105..19124418 737..424 1570 100 Minus
2R 25286936 2R 19122910..19123087 1681..1504 890 100 Minus
2R 25286936 2R 19122450..19122613 1984..1821 820 100 Minus
2R 25286936 2R 19123295..19123438 1419..1276 720 100 Minus
2R 25286936 2R 19122671..19122811 1821..1681 705 100 Minus
2R 25286936 2R 19123147..19123232 1505..1420 430 100 Minus
3R 32079331 3R 31770281..31770495 1356..1142 340 77.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:57:16 has no hits.

BO04405.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:04 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 232..2217 7..1992 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:32 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 301..2268 17..1986 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:32 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 242..2209 17..1986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:43 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
CG15117-RA 301..2268 17..1986 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:43 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19122448..19122613 1821..1986 98 <- Minus
2R 19122672..19122810 1682..1820 100 <- Minus
2R 19122910..19123086 1505..1681 100 <- Minus
2R 19123148..19123232 1420..1504 100 <- Minus
2R 19123295..19123438 1276..1419 100 <- Minus
2R 19123499..19124036 738..1275 100 <- Minus
2R 19124105..19124417 425..737 100 <- Minus
2R 19124537..19124942 17..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:32 Download gff for BO04405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15009953..15010118 1821..1986 98 <- Minus
arm_2R 15010177..15010315 1682..1820 100 <- Minus
arm_2R 15010415..15010591 1505..1681 100 <- Minus
arm_2R 15010653..15010737 1420..1504 100 <- Minus
arm_2R 15010800..15010943 1276..1419 100 <- Minus
arm_2R 15011004..15011541 738..1275 100 <- Minus
arm_2R 15011610..15011922 425..737 100 <- Minus
arm_2R 15012042..15012447 17..424 99   Minus

BO04405.pep Sequence

Translation from 16 to 2002

> BO04405.pep
MALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLYPRESETREVRSLDG
IWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPVPASYNDITTDNLRD
HVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYVWINGQKVVKHEMGH
LPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGRITEVPNDGGMTIVQ
SYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLSKDATVGEVFYSVSV
NGSAANEADNVLQIQANLYDKDGILVANATSDQKLGGKLQVNPVKPWWPY
LMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTLSWNSQQFLINGKPV
YFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGANAYRTSHYPYSEESM
QFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQLIHRDRNHPSVVMW
SIANEPRTGSVSADSYFELVANFTRSLDKTRPITAAIAVSNTQDKAGRSL
DIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRYNKPIIMSEYGADTL
EGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWFIGEFVWNFADFKTA
QSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGRDLDQCSFPEDLFTY
IADLISASFLDH

BO04405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15117-PA 656 CG15117-PA 1..656 1..656 3470 100 Plus
CG15117-PC 656 CG15117-PC 1..656 1..656 3467 99.8 Plus
CG15117-PB 670 CG15117-PB 16..670 2..656 3465 100 Plus
CG15117-PD 648 CG15117-PD 3..648 9..656 3378 98.6 Plus
CG15117-PF 623 CG15117-PF 1..623 34..656 3311 100 Plus