Clone Sequence Records
BO04405.3prime Sequence
852 bp (830 high quality bases) assembled on 2005-12-01
> BO04405.3prime
ATGGTCTAGAAAGCTTGCGGATATCAGATCGGCGATGTAGGTGAAGAGAT
CTTCCGGGAAGCTGCACTGGTCCAAATCTCTGCCCAATGCAAAGTATCTT
TTGCGAAGGAGATGAGCTGCCGCTTTGGGTTGGCGCGCGCGGGTGAAAAC
ACCCTTTTTATTGCCTCCCACGCGGGTGTAGCTTTGTGCTGTCTTAAAGT
CCGCAAAGTTCCATACAAACTCGCCAATGAACCAGCCCTTCTTGCGCAGC
TCATCGAAGGCCTTAAAATGGCGGGAAAACACCTCCGTCTGGAACTCCTC
CGACCACACATAAGCAGGTTGCATATGCAAGCCCTCCAAGGTATCTGCTC
CATATTCAGACATGATAATGGGTTTGTTGTAGCGTTTATTCCAGGCAATG
GCCTCGTCGATCACATTCTGGGTTATCATGTCCAGACGTCCGGCATTTGA
GTACCAGGCATTGTAGCGATTGAAGCTGATGATGTCCAGAGAGCGGCCCG
CCTTATCCTGGGTGTTTGAAACAGCAATGGCAGCCGTGATGGGTCGGGTT
TTATCCAGAGACCGTGTGAAGTTGGCCACTAATTCAAAGTACGAATCCGC
ACTCACGCTACCAGTCCGGGGTTCATTGGCAATGGACCACATCACCACAC
TTGGATGATTCCGATCCCGATGGATGAGCTGCTCCAGCGACGATTTGTGC
TTGCCCAGCAGCTCCTGGCTAAAGTTTTCTGTATCCACACTGGGACATTC
GTCGATGATCATGATGCCGTGCTCATCCGCAAACTGCATGGACTCCTCGG
AGTAGGGATAATGCGACGTGCGATACGCATTCGCTCCAATCCACTTGAGC
AG
BO04405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-PB | 2013 | CG15117-RB | 1177..2010 | 852..19 | 4170 | 100 | Minus |
CG15117-PA | 1971 | CG15117-RA | 1135..1968 | 852..19 | 4170 | 100 | Minus |
CG15117-PC | 1971 | CG15117-RC | 1135..1968 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-RF | 2707 | CG15117-RF | 1655..2488 | 852..19 | 4170 | 100 | Minus |
CG15117-RE | 2380 | CG15117-RE | 1328..2161 | 852..19 | 4170 | 100 | Minus |
CG15117-RD | 2191 | CG15117-RD | 1139..1972 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19122910..19123087 | 322..499 | 890 | 100 | Plus |
2R | 25286936 | 2R | 19122450..19122613 | 19..182 | 820 | 100 | Plus |
2R | 25286936 | 2R | 19123295..19123438 | 584..727 | 720 | 100 | Plus |
2R | 25286936 | 2R | 19122671..19122811 | 182..322 | 705 | 100 | Plus |
2R | 25286936 | 2R | 19123499..19123623 | 728..852 | 625 | 100 | Plus |
2R | 25286936 | 2R | 19123147..19123232 | 498..583 | 430 | 100 | Plus |
3R | 32079331 | 3R | 31770281..31770486 | 647..852 | 325 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:03:38 has no hits.
BO04405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:07 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-PC | 1135..1971 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:54 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-PC | 1135..1971 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:15 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RD | 1139..1980 | 11..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:03 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RD | 1139..1980 | 11..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:03 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19122442..19122613 | 11..182 | 97 | <- | Plus |
2R | 19122672..19122810 | 183..321 | 100 | <- | Plus |
2R | 19122910..19123086 | 322..498 | 100 | <- | Plus |
2R | 19123148..19123232 | 499..583 | 100 | <- | Plus |
2R | 19123295..19123438 | 584..727 | 100 | <- | Plus |
2R | 19123499..19123623 | 728..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:15 Download gff for
BO04405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15010177..15010315 | 183..321 | 100 | <- | Plus |
arm_2R | 15010415..15010591 | 322..498 | 100 | <- | Plus |
arm_2R | 15010653..15010737 | 499..583 | 100 | <- | Plus |
arm_2R | 15010800..15010943 | 584..727 | 100 | <- | Plus |
arm_2R | 15011004..15011128 | 728..852 | 100 | | Plus |
arm_2R | 15009947..15010118 | 11..182 | 97 | <- | Plus |
BO04405.5prime Sequence
898 bp (753 high quality bases) assembled on 2005-12-01
> BO04405.5prime
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAAGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTG
BO04405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-PA | 1971 | CG15117-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG15117-PB | 2013 | CG15117-RB | 45..924 | 19..898 | 4375 | 99.8 | Plus |
CG15117-PC | 1971 | CG15117-RC | 5..882 | 21..898 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-RA | 2487 | CG15117-RA | 301..1182 | 17..898 | 4395 | 99.9 | Plus |
CG15117-RC | 2211 | CG15117-RC | 20..906 | 12..898 | 4390 | 99.7 | Plus |
CG15117-RB | 2338 | CG15117-RB | 154..1033 | 19..898 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19124537..19124941 | 424..20 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 19124105..19124418 | 737..424 | 1570 | 100 | Minus |
2R | 25286936 | 2R | 19123876..19124037 | 898..737 | 795 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:05:09 has no hits.
BO04405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:08 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:14:56 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:28 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 291..1182 | 7..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:11 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 291..1182 | 7..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:11 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19124537..19124946 | 12..424 | 99 | | Minus |
2R | 19123876..19124036 | 738..898 | 99 | <- | Minus |
2R | 19124105..19124417 | 425..737 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:28 Download gff for
BO04405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15011381..15011541 | 738..898 | 99 | <- | Minus |
arm_2R | 15011610..15011922 | 425..737 | 100 | <- | Minus |
arm_2R | 15012042..15012451 | 12..424 | 99 | | Minus |
BO04405.complete Sequence
2002 bp assembled on 2008-08-14
GenBank Submission: FJ629746
> BO04405.complete
GAAGTTATCAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTC
TTTATGTCCTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTG
CCCCAAACGCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGT
GCGATCTCTGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATC
CCACGCAGGGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGC
AGGCCCACAATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCAC
GGACAATTTGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCT
TTGTGCCCCGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGC
AGTGTTCACTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAA
GCATGAAATGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGA
GCTATGGAGCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATT
CAGACAACTGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGG
CATGACCATTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAA
TCCACAGGAGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAG
GTTGAGGTCACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTT
CTATAGCGTAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCT
TGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAAT
GCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAA
GCCCTGGTGGCCCTACCTAATGCATTCCGAACCGGGTTATCTGTACCAGC
TGGAGATCAAATTGCTGGCGACCAACGATGAGCTCCTGGATGTCTACCGA
CTGAAAGTGGGAATACGCACACTAAGTTGGAACAGCCAGCAGTTCCTGAT
CAACGGCAAGCCCGTTTACTTCCGTGGTTTTGGACGACACGAAGATTCGG
ATATCAGGGGTAAGGGTCTGGACAATGCACTGATGGTGCGCGATTTCAAT
CTGCTCAAGTGGATTGGAGCGAATGCGTATCGCACGTCGCATTATCCCTA
CTCCGAGGAGTCCATGCAGTTTGCGGATGAGCACGGCATCATGATCATCG
ACGAATGTCCCAGTGTGGATACAGAAAACTTTAGCCAGGAGCTGCTGGGC
AAGCACAAATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCC
AAGTGTGGTGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGA
GTGCGGATTCGTACTTTGAATTAGTGGCCAACTTCACACGGTCTCTGGAT
AAAACCCGACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAA
GGCGGGCCGCTCTCTGGACATCATCAGCTTCAATCGCTACAATGCCTGGT
ACTCAAATGCCGGACGTCTGGACATGATAACCCAGAATGTGATCGACGAG
GCCATTGCCTGGAATAAACGCTACAACAAACCCATTATCATGTCTGAATA
TGGAGCAGATACCTTGGAGGGCTTGCATATGCAACCTGCTTATGTGTGGT
CGGAGGAGTTCCAGACGGAGGTGTTTTCCCGCCATTTTAAGGCCTTCGAT
GAGCTGCGCAAGAAGGGCTGGTTCATTGGCGAGTTTGTATGGAACTTTGC
GGACTTTAAGACAGCACAAAGCTACACCCGCGTGGGAGGCAATAAAAAGG
GTGTTTTCACCCGCGCGCGCCAACCCAAAGCGGCAGCTCATCTCCTTCGC
AAAAGATACTTTGCATTGGGCAGAGATTTGGACCAGTGCAGCTTCCCGGA
AGATCTCTTCACCTACATCGCCGATCTGATATCCGCAAGCTTTCTAGACC
AT
BO04405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-RA | 1971 | CG15117-PA | 1..1968 | 17..1984 | 9840 | 100 | Plus |
CG15117-RB | 2013 | CG15117-PB | 45..2010 | 19..1984 | 9830 | 100 | Plus |
CG15117-RC | 1971 | CG15117-PC | 1..1968 | 17..1984 | 9825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-RA | 2487 | CG15117-RA | 301..2268 | 17..1984 | 9840 | 100 | Plus |
CG15117-RC | 2211 | CG15117-RC | 20..1992 | 12..1984 | 9835 | 99.9 | Plus |
CG15117-RB | 2338 | CG15117-RB | 154..2119 | 19..1984 | 9830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19123499..19124037 | 1275..737 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 19124537..19124941 | 424..20 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 19124105..19124418 | 737..424 | 1570 | 100 | Minus |
2R | 25286936 | 2R | 19122910..19123087 | 1681..1504 | 890 | 100 | Minus |
2R | 25286936 | 2R | 19122450..19122613 | 1984..1821 | 820 | 100 | Minus |
2R | 25286936 | 2R | 19123295..19123438 | 1419..1276 | 720 | 100 | Minus |
2R | 25286936 | 2R | 19122671..19122811 | 1821..1681 | 705 | 100 | Minus |
2R | 25286936 | 2R | 19123147..19123232 | 1505..1420 | 430 | 100 | Minus |
3R | 32079331 | 3R | 31770281..31770495 | 1356..1142 | 340 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:16 has no hits.
BO04405.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:04 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 232..2217 | 7..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:32 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 301..2268 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:32 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 242..2209 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:43 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15117-RA | 301..2268 | 17..1986 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:43 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19122448..19122613 | 1821..1986 | 98 | <- | Minus |
2R | 19122672..19122810 | 1682..1820 | 100 | <- | Minus |
2R | 19122910..19123086 | 1505..1681 | 100 | <- | Minus |
2R | 19123148..19123232 | 1420..1504 | 100 | <- | Minus |
2R | 19123295..19123438 | 1276..1419 | 100 | <- | Minus |
2R | 19123499..19124036 | 738..1275 | 100 | <- | Minus |
2R | 19124105..19124417 | 425..737 | 100 | <- | Minus |
2R | 19124537..19124942 | 17..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:32 Download gff for
BO04405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15009953..15010118 | 1821..1986 | 98 | <- | Minus |
arm_2R | 15010177..15010315 | 1682..1820 | 100 | <- | Minus |
arm_2R | 15010415..15010591 | 1505..1681 | 100 | <- | Minus |
arm_2R | 15010653..15010737 | 1420..1504 | 100 | <- | Minus |
arm_2R | 15010800..15010943 | 1276..1419 | 100 | <- | Minus |
arm_2R | 15011004..15011541 | 738..1275 | 100 | <- | Minus |
arm_2R | 15011610..15011922 | 425..737 | 100 | <- | Minus |
arm_2R | 15012042..15012447 | 17..424 | 99 | | Minus |
BO04405.pep Sequence
Translation from 16 to 2002
> BO04405.pep
MALSIFSLVTGLYVLHFSIALILVNKEVPQTRGMLYPRESETREVRSLDG
IWNFVRSDQANPTQGVRDEWYAKELSKSRPTIPMPVPASYNDITTDNLRD
HVGTVWYDRKFFVPRSWSKDQRIWLRFGSVHYEAYVWINGQKVVKHEMGH
LPFEAEVTDLLSYGAENRITVMCDNALIQTTVPQGRITEVPNDGGMTIVQ
SYTFDFFNYAGIHRSVHLYTTPRTFIEEVEVTTNLSKDATVGEVFYSVSV
NGSAANEADNVLQIQANLYDKDGILVANATSDQKLGGKLQVNPVKPWWPY
LMHSEPGYLYQLEIKLLATNDELLDVYRLKVGIRTLSWNSQQFLINGKPV
YFRGFGRHEDSDIRGKGLDNALMVRDFNLLKWIGANAYRTSHYPYSEESM
QFADEHGIMIIDECPSVDTENFSQELLGKHKSSLEQLIHRDRNHPSVVMW
SIANEPRTGSVSADSYFELVANFTRSLDKTRPITAAIAVSNTQDKAGRSL
DIISFNRYNAWYSNAGRLDMITQNVIDEAIAWNKRYNKPIIMSEYGADTL
EGLHMQPAYVWSEEFQTEVFSRHFKAFDELRKKGWFIGEFVWNFADFKTA
QSYTRVGGNKKGVFTRARQPKAAAHLLRKRYFALGRDLDQCSFPEDLFTY
IADLISASFLDH
BO04405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15117-PA | 656 | CG15117-PA | 1..656 | 1..656 | 3470 | 100 | Plus |
CG15117-PC | 656 | CG15117-PC | 1..656 | 1..656 | 3467 | 99.8 | Plus |
CG15117-PB | 670 | CG15117-PB | 16..670 | 2..656 | 3465 | 100 | Plus |
CG15117-PD | 648 | CG15117-PD | 3..648 | 9..656 | 3378 | 98.6 | Plus |
CG15117-PF | 623 | CG15117-PF | 1..623 | 34..656 | 3311 | 100 | Plus |