Clone Sequence Records
BO04407.3prime Sequence
935 bp (834 high quality bases) assembled on 2005-12-01
> BO04407.3prime
ATGGTCTAGAAAGCTTGCGTTCAGTTTCTTCTCTTCCTTGAGCTCCTTGA
GTCGATTCAGGCGCTGGAGAAGAGTCGGATGTGAGTGGTTCCAAGTCGAG
TACAGCCAATCGTAAACGGGGAAGCCAAGGTTGTCAACGTTCAGTTTTAT
GAGGGCCTGACCCAACTGCTCAGCGAATCCCAACTTGAAAGCGAACTCAT
CAGCCTGATACTCGAATCGTCGCGACAAAATTGTCATGGCGAAGTTCATG
AGGGCATTGTATGGCGCGAGTACGTAGGTAAAGACGATTAGCAAACCGAC
GAGAATGGGCCGAGTACCAGGTTGGAATCCCATGGCCACGTAGAATGGTG
GATACTTGAAGACATTTCCAAAGACCAGGAACATCAGAAAGAGATGAACC
TGCATGATAATAATGTTCTTGGTAACGTGTCCCAGTTTCCAGTGTCCCAG
CTCGTGTCCCAAAACAGCCAGCACCTCCTCGTCGGTGCAACCCTTTCCCT
TTTCTTCCTCTGACAACTCGGAGTCGTCCGGTTTACCTTTGTTTAGCAGC
AGCGTGTCGAATAGCACGATCCTCTTCGAGTTCCAGAGGCCATAGAAGTA
GGCATTGCTGTGCGAGGAGCGCTTGGATCCCTCCACCACGAAAAGCTTAG
TGAGCGGGAACTTGAGCGATGCGGCCAGATCCTCAATCGATTGCCTCAGA
GCACCCTTCTCCAGCGGAGTATACTTGTCGAACAGGGGAGCAATGAAAAT
CGGATACAAAGTGAGTAGAACCAGCGAGATAACGCCTGTGAAGATCCACA
GCCATATGAAAAAGTTGTCGCCGCCGCGTTGCACGATGAAGATAATAGCC
GCTGTGATGGGAATCATGAGGACCTGGGTGACTAGGAAGCCTTTGAGCTG
ATCCCAGGCGAAGAATCTCGCTGTTTGTTTGTTAA
BO04407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 437..1353 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 516..1432 | 935..19 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000359..17001275 | 19..935 | 4585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:31 has no hits.
BO04407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:11 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 439..1356 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:00 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 439..1356 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:34 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 516..1436 | 14..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:20 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 516..1436 | 14..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:20 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000355..17001275 | 14..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:34 Download gff for
BO04407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12887860..12888780 | 14..935 | 99 | | Plus |
BO04407.5prime Sequence
865 bp (795 high quality bases) assembled on 2005-12-01
> BO04407.5prime
GAAGTTATCAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGA
GCATTTTGTTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCG
CTGCGCCAGGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACT
GAAGTCACACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTC
TGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCC
CTGCTTTGCATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCT
GTCCGTCCAGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCA
TCGTCAGCTGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAG
GGACTGCCCTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGG
CTTTAACAAACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCT
TCCTAGTCACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTC
ATCGTGCAACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCAC
AGGCGTTATCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTC
CCCTGTTCGACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCG
ATTGAGGATCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGT
GGTGGAGGGATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCC
TCTGGAAATCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAAA
GGTAAACCGGACGAC
BO04407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 1..849 | 17..865 | 4220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..928 | 17..865 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000863..17001622 | 865..106 | 3785 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:15:12 has no hits.
BO04407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:12 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:02 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:38 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..928 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:33 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..928 | 17..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:33 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000863..17001618 | 110..865 | 99 | <- | Minus |
| 2R | 17001770..17001862 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:38 Download gff for
BO04407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12888368..12889123 | 110..865 | 99 | <- | Minus |
| arm_2R | 12889275..12889367 | 17..109 | 100 | | Minus |
BO04407.complete Sequence
1387 bp (1387 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629747
> BO04407.complete
GAAGTTATCAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGA
GCATTTTGTTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCG
CTGCGCCAGGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACT
GAAGTCACACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTC
TGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCC
CTGCTTTGCATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCT
GTCCGTCCAGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCA
TCGTCAGCTGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAG
GGACTGCCCTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGG
CTTTAACAAACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCT
TCCTAGTCACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTC
ATCGTGCAACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCAC
AGGCGTTATCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTC
CCCTGTTCGACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCG
ATTGAGGATCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGT
GGTGGAGGGATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCC
TCTGGAACTCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAAA
GGTAAACCGGACGACTCCGAGTTGTCAGAGGAAGAAAAGGGAAAGGGTTG
CACCGACGAGGAGGTGCTGGCTGTTTTGGGACACGAGCTGGGACACTGGA
AACTGGGACACGTTACCAAGAACATTATTATCATGCAGGTTCATCTCTTT
CTGATGTTCCTGGTCTTTGGAAATGTCTTCAAGTATCCACCATTCTACGT
GGCCATGGGATTCCAACCTGGTACTCGGCCCATTCTCGTCGGTTTGCTAA
TCGTCTTTACCTACGTACTCGCGCCATACAATGCCCTCATGAACTTCGCC
ATGACAATTTTGTCGCGACGATTCGAGTATCAGGCTGATGAGTTCGCTTT
CAAGTTGGGATTCGCTGAGCAGTTGGGTCAGGCCCTCATAAAACTGAACG
TTGACAACCTTGGCTTCCCCGTTTACGATTGGCTGTACTCGACTTGGAAC
CACTCACATCCGACTCTTCTCCAGCGCCTGAATCGACTCAAGGAGCTCAA
GGAAGAGAAGAAACTGAACGCAAGCTTTCTAGACCAT
BO04407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1356 | CG9000-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..1432 | 17..1369 | 6765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000359..17001622 | 1369..106 | 6320 | 100 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:12:30 has no hits.
BO04407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:08 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 1..1356 | 17..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:15 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 65..1421 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:16 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1432 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:08 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-RA | 65..1421 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:11 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..1432 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:11 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000357..17001618 | 110..1371 | 99 | <- | Minus |
| 2R | 17001770..17001862 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:16 Download gff for
BO04407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12887862..12889123 | 110..1371 | 99 | <- | Minus |
| arm_2R | 12889275..12889367 | 17..109 | 100 | | Minus |
BO04407.pep Sequence
Translation from 16 to 1387
> BO04407.pep
MSSLDADTVLLSILFLVVIENALEIYISLRQVKVYQTALKVPAELKSHMG
EDTFHKARKYGLDQEKFGIFKAVVMDVALLCMELYIGLIAVLWQLSVQVV
DKLQWDSKNEIIVSCVFVLISNVLSTFKGLPFKIYKIFVLEETHGFNKQT
ARFFAWDQLKGFLVTQVLMIPITAAIIFIVQRGGDNFFIWLWIFTGVISL
VLLTLYPIFIAPLFDKYTPLEKGALRQSIEDLAASLKFPLTKLFVVEGSK
RSSHSNAYFYGLWNSKRIVLFDTLLLNKGKPDDSELSEEEKGKGCTDEEV
LAVLGHELGHWKLGHVTKNIIIMQVHLFLMFLVFGNVFKYPPFYVAMGFQ
PGTRPILVGLLIVFTYVLAPYNALMNFAMTILSRRFEYQADEFAFKLGFA
EQLGQALIKLNVDNLGFPVYDWLYSTWNHSHPTLLQRLNRLKELKEEKKL
NASFLDH
BO04407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-PA | 451 | CG9000-PA | 1..451 | 1..451 | 2324 | 100 | Plus |
| ste24b-PA | 447 | CG9001-PA | 8..446 | 5..445 | 769 | 37.8 | Plus |
| ste24c-PC | 456 | CG9002-PC | 10..453 | 4..452 | 767 | 36.8 | Plus |
| ste24c-PD | 456 | CG9002-PD | 10..453 | 4..452 | 767 | 36.8 | Plus |
| ste24c-PA | 456 | CG9002-PA | 10..453 | 4..452 | 767 | 36.8 | Plus |
