Clone BO04409 Report

Search the DGRC for BO04409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptGasp-RA
Protein status:BO04409.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO04409.3prime Sequence

806 bp (805 high quality bases) assembled on 2005-12-01

> BO04409.3prime
ATGGTCTAGAAAGCTTGCTGAGGAGGAGGAGGCAGCTTTGGTTTTTGGCG
CGCCCTTAGTGCGACCTTCACTGTTCAGTCCAGCTAGAAGTTCGCTCTTG
CGGATGCTCTTCAAATCCAGATCGCCGTAGTAGTCCTCACACCCGGGAAC
ATCCTCGGGATCCTCGCAGTTGCCAGTGCCATCACTGTCGCCAATCTTGA
ACACTGTGCCGATGGGGCATCCGTACTCGCGTGCCACACCCTCCAGGCAG
ATGTAGTACTTGCGGCAGTCCTCGGGATGGGCGTGGCGCGAGAAGGATCC
GGCGTTGGCCAGCTCACCAGCCGCCGGGCAAGAGAATCCGTTGGCCACCT
CTTCGTTCTTGCACTCAGGCACCTGGTCAGCCCACATGCACACGCGAGCA
TCGCGATCGTAAGCCAATCCGGGGGAGCACTGGTATCTGGAGGGCTCGCC
GTTCCAGCAGTTCCAGAACACGTCGCACTTGTTCTCATCGGGGAAGATGC
CGTACAGGCGAGAGCAGTGGGGGGTGGTAATTGGGGGCTCCAGCTCTGTG
CGATCGCCGCAATCCACGTTGTGTAGATAGTCGCAGTTTTCGGTTAGGTA
CTTGGAGTCTGTGGCATCGAAAGCCAGACCGTTTCCACAGGTCTTCAGCT
CGGAAACGCCGTTGTCGCACTTCCAGTACTTGTCGCAGGACGTGTCATGT
GGATAGAATCCAAAGTCATCGGGACACTTAAAGCTACTTTGGGCCACAGC
GGCTCCGAATAATGCCACAAACACCACGAGAAACTTCTTCATGTCGACTG
ATAACT

BO04409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10287-PA 777 Gasp-RA 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..909 792..19 3870 100 Minus
Gasp-RB 1683 CG10287-RB 136..807 792..121 3315 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 140..352 1065 100 Plus
3R 32079331 3R 6094811..6095021 540..750 1055 100 Plus
3R 32079331 3R 6094504..6094693 351..540 950 100 Plus
3R 32079331 3R 6093554..6093675 19..140 610 100 Plus
3R 32079331 3R 6100710..6100752 750..792 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:05:54 has no hits.

BO04409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:14 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-PA 1..777 15..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:04 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10287-PA 1..777 15..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:03 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..912 15..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:20 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..912 15..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:20 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6093550..6093674 15..139 98 <- Plus
3R 6094227..6094437 140..350 100 <- Plus
3R 6094504..6094692 351..539 100 <- Plus
3R 6094811..6095020 540..749 100 <- Plus
3R 6100710..6100759 750..801 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:03 Download gff for BO04409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919272..1919396 15..139 98 <- Plus
arm_3R 1919949..1920159 140..350 100 <- Plus
arm_3R 1920226..1920414 351..539 100 <- Plus
arm_3R 1920533..1920742 540..749 100 <- Plus
arm_3R 1926432..1926481 750..801 92   Plus

BO04409.5prime Sequence

790 bp (759 high quality bases) assembled on 2005-11-29

> BO04409.5prime
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCA

BO04409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10287-PA 777 Gasp-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..909 17..790 3870 100 Plus
Gasp-RB 1683 CG10287-RB 136..807 17..688 3315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 669..457 1065 100 Minus
3R 32079331 3R 6094811..6095021 269..59 1055 100 Minus
3R 32079331 3R 6094504..6094693 458..269 950 100 Minus
3R 32079331 3R 6093554..6093675 790..669 610 100 Minus
3R 32079331 3R 6100710..6100752 59..17 215 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:06:11 has no hits.

BO04409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:15 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-PA 1..773 17..789 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:05 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10287-PA 1..773 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:49 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..908 8..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:31 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..908 8..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:31 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6093555..6093674 670..789 100 <- Minus
3R 6094227..6094437 459..669 100 <- Minus
3R 6094504..6094692 270..458 100 <- Minus
3R 6094811..6095020 60..269 100 <- Minus
3R 6100710..6100759 8..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:49 Download gff for BO04409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919277..1919396 670..789 100 <- Minus
arm_3R 1919949..1920159 459..669 100 <- Minus
arm_3R 1920226..1920414 270..458 100 <- Minus
arm_3R 1920533..1920742 60..269 100 <- Minus
arm_3R 1926432..1926481 8..59 92   Minus

BO04409.complete Sequence

808 bp (808 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629748

> BO04409.complete
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCAGCAAGCTTTC
TAGACCAT

BO04409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 777 CG10287-PA 1..774 17..790 3870 100 Plus
Gasp-RB 708 CG10287-PB 1..672 17..688 3315 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-RA 1460 CG10287-RA 136..909 17..790 3870 100 Plus
Gasp-RB 1683 CG10287-RB 136..807 17..688 3315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6094227..6094439 669..457 1065 100 Minus
3R 32079331 3R 6094811..6095021 269..59 1055 100 Minus
3R 32079331 3R 6094504..6094693 458..269 950 100 Minus
3R 32079331 3R 6093554..6093675 790..669 610 100 Minus
3R 32079331 3R 6100710..6100752 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:30:20 has no hits.

BO04409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:09 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:17 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..912 8..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:02 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 136..909 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:09 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 129..912 8..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:32 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
Gasp-RA 136..909 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:32 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6093552..6093674 670..792 98 <- Minus
3R 6094227..6094437 459..669 100 <- Minus
3R 6094504..6094692 270..458 100 <- Minus
3R 6094811..6095020 60..269 100 <- Minus
3R 6100710..6100752 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:02 Download gff for BO04409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1919274..1919396 670..792 98 <- Minus
arm_3R 1920226..1920414 270..458 100 <- Minus
arm_3R 1919949..1920159 459..669 100 <- Minus
arm_3R 1920533..1920742 60..269 100 <- Minus
arm_3R 1926432..1926474 17..59 100   Minus

BO04409.pep Sequence

Translation from 16 to 808

> BO04409.pep
MKKFLVVFVALFGAAVAQSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELK
TCGNGLAFDATDSKYLTENCDYLHNVDCGDRTELEPPITTPHCSRLYGIF
PDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMWADQVPECKNEEVA
NGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKI
GDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPK
TKAASSSSASFLDH

BO04409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gasp-PA 258 CG10287-PA 1..258 1..258 1451 100 Plus
Gasp-PB 235 CG10287-PB 1..232 1..232 1317 98.3 Plus
obst-A-PB 237 CG17052-PB 1..235 1..228 429 37 Plus
obst-A-PA 237 CG17052-PA 1..235 1..228 429 37 Plus
obst-B-PA 337 CG4778-PA 85..284 22..224 351 36.1 Plus