Clone Sequence Records
BO04409.3prime Sequence
806 bp (805 high quality bases) assembled on 2005-12-01
> BO04409.3prime
ATGGTCTAGAAAGCTTGCTGAGGAGGAGGAGGCAGCTTTGGTTTTTGGCG
CGCCCTTAGTGCGACCTTCACTGTTCAGTCCAGCTAGAAGTTCGCTCTTG
CGGATGCTCTTCAAATCCAGATCGCCGTAGTAGTCCTCACACCCGGGAAC
ATCCTCGGGATCCTCGCAGTTGCCAGTGCCATCACTGTCGCCAATCTTGA
ACACTGTGCCGATGGGGCATCCGTACTCGCGTGCCACACCCTCCAGGCAG
ATGTAGTACTTGCGGCAGTCCTCGGGATGGGCGTGGCGCGAGAAGGATCC
GGCGTTGGCCAGCTCACCAGCCGCCGGGCAAGAGAATCCGTTGGCCACCT
CTTCGTTCTTGCACTCAGGCACCTGGTCAGCCCACATGCACACGCGAGCA
TCGCGATCGTAAGCCAATCCGGGGGAGCACTGGTATCTGGAGGGCTCGCC
GTTCCAGCAGTTCCAGAACACGTCGCACTTGTTCTCATCGGGGAAGATGC
CGTACAGGCGAGAGCAGTGGGGGGTGGTAATTGGGGGCTCCAGCTCTGTG
CGATCGCCGCAATCCACGTTGTGTAGATAGTCGCAGTTTTCGGTTAGGTA
CTTGGAGTCTGTGGCATCGAAAGCCAGACCGTTTCCACAGGTCTTCAGCT
CGGAAACGCCGTTGTCGCACTTCCAGTACTTGTCGCAGGACGTGTCATGT
GGATAGAATCCAAAGTCATCGGGACACTTAAAGCTACTTTGGGCCACAGC
GGCTCCGAATAATGCCACAAACACCACGAGAAACTTCTTCATGTCGACTG
ATAACT
BO04409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10287-PA | 777 | Gasp-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..909 | 792..19 | 3870 | 100 | Minus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 792..121 | 3315 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 140..352 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 6094811..6095021 | 540..750 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 6094504..6094693 | 351..540 | 950 | 100 | Plus |
3R | 32079331 | 3R | 6093554..6093675 | 19..140 | 610 | 100 | Plus |
3R | 32079331 | 3R | 6100710..6100752 | 750..792 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:05:54 has no hits.
BO04409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:14 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:04 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10287-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:03 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..912 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:20 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..912 | 15..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:20 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6093550..6093674 | 15..139 | 98 | <- | Plus |
3R | 6094227..6094437 | 140..350 | 100 | <- | Plus |
3R | 6094504..6094692 | 351..539 | 100 | <- | Plus |
3R | 6094811..6095020 | 540..749 | 100 | <- | Plus |
3R | 6100710..6100759 | 750..801 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:03 Download gff for
BO04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919272..1919396 | 15..139 | 98 | <- | Plus |
arm_3R | 1919949..1920159 | 140..350 | 100 | <- | Plus |
arm_3R | 1920226..1920414 | 351..539 | 100 | <- | Plus |
arm_3R | 1920533..1920742 | 540..749 | 100 | <- | Plus |
arm_3R | 1926432..1926481 | 750..801 | 92 | | Plus |
BO04409.5prime Sequence
790 bp (759 high quality bases) assembled on 2005-11-29
> BO04409.5prime
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCA
BO04409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10287-PA | 777 | Gasp-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..909 | 17..790 | 3870 | 100 | Plus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 17..688 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 669..457 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 6094811..6095021 | 269..59 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 6094504..6094693 | 458..269 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6093554..6093675 | 790..669 | 610 | 100 | Minus |
3R | 32079331 | 3R | 6100710..6100752 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:06:11 has no hits.
BO04409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:15 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-PA | 1..773 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:05 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10287-PA | 1..773 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:49 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..908 | 8..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:31 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..908 | 8..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:31 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6093555..6093674 | 670..789 | 100 | <- | Minus |
3R | 6094227..6094437 | 459..669 | 100 | <- | Minus |
3R | 6094504..6094692 | 270..458 | 100 | <- | Minus |
3R | 6094811..6095020 | 60..269 | 100 | <- | Minus |
3R | 6100710..6100759 | 8..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:49 Download gff for
BO04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919277..1919396 | 670..789 | 100 | <- | Minus |
arm_3R | 1919949..1920159 | 459..669 | 100 | <- | Minus |
arm_3R | 1920226..1920414 | 270..458 | 100 | <- | Minus |
arm_3R | 1920533..1920742 | 60..269 | 100 | <- | Minus |
arm_3R | 1926432..1926481 | 8..59 | 92 | | Minus |
BO04409.complete Sequence
808 bp (808 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629748
> BO04409.complete
GAAGTTATCAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTAT
TCGGAGCCGCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGA
TTCTATCCACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGG
CGTTTCCGAGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAG
ACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGC
GGCGATCGCACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCG
CCTGTACGGCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACT
GCTGGAACGGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTAC
GATCGCGATGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAA
GAACGAAGAGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGG
CCAACGCCGGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAG
TACTACATCTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGG
CACAGTGTTCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATC
CCGAGGATGTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAG
AGCATCCGCAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCAC
TAAGGGCGCGCCAAAAACCAAAGCTGCCTCCTCCTCCTCAGCAAGCTTTC
TAGACCAT
BO04409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 777 | CG10287-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Gasp-RB | 708 | CG10287-PB | 1..672 | 17..688 | 3315 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-RA | 1460 | CG10287-RA | 136..909 | 17..790 | 3870 | 100 | Plus |
Gasp-RB | 1683 | CG10287-RB | 136..807 | 17..688 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6094227..6094439 | 669..457 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 6094811..6095021 | 269..59 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 6094504..6094693 | 458..269 | 950 | 100 | Minus |
3R | 32079331 | 3R | 6093554..6093675 | 790..669 | 610 | 100 | Minus |
3R | 32079331 | 3R | 6100710..6100752 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:30:20 has no hits.
BO04409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:32:09 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:59:17 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..912 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:02 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 136..909 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:32:09 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 129..912 | 8..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:32 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasp-RA | 136..909 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:32 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6093552..6093674 | 670..792 | 98 | <- | Minus |
3R | 6094227..6094437 | 459..669 | 100 | <- | Minus |
3R | 6094504..6094692 | 270..458 | 100 | <- | Minus |
3R | 6094811..6095020 | 60..269 | 100 | <- | Minus |
3R | 6100710..6100752 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:02 Download gff for
BO04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1919274..1919396 | 670..792 | 98 | <- | Minus |
arm_3R | 1920226..1920414 | 270..458 | 100 | <- | Minus |
arm_3R | 1919949..1920159 | 459..669 | 100 | <- | Minus |
arm_3R | 1920533..1920742 | 60..269 | 100 | <- | Minus |
arm_3R | 1926432..1926474 | 17..59 | 100 | | Minus |
BO04409.pep Sequence
Translation from 16 to 808
> BO04409.pep
MKKFLVVFVALFGAAVAQSSFKCPDDFGFYPHDTSCDKYWKCDNGVSELK
TCGNGLAFDATDSKYLTENCDYLHNVDCGDRTELEPPITTPHCSRLYGIF
PDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMWADQVPECKNEEVA
NGFSCPAAGELANAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKI
GDSDGTGNCEDPEDVPGCEDYYGDLDLKSIRKSELLAGLNSEGRTKGAPK
TKAASSSSASFLDH
BO04409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasp-PA | 258 | CG10287-PA | 1..258 | 1..258 | 1451 | 100 | Plus |
Gasp-PB | 235 | CG10287-PB | 1..232 | 1..232 | 1317 | 98.3 | Plus |
obst-A-PB | 237 | CG17052-PB | 1..235 | 1..228 | 429 | 37 | Plus |
obst-A-PA | 237 | CG17052-PA | 1..235 | 1..228 | 429 | 37 | Plus |
obst-B-PA | 337 | CG4778-PA | 85..284 | 22..224 | 351 | 36.1 | Plus |