Clone BO04411 Report

Search the DGRC for BO04411

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG6565-RA
Protein status:BO04411.pep: validated full length
Sequenced Size:1309

Clone Sequence Records

BO04411.3prime Sequence

842 bp (755 high quality bases) assembled on 2005-12-01

> BO04411.3prime
ATGGTCTAGAAAGCTTGCACGACCTGCTTCGGGTTTACTATTGACCTTGC
GCCGGCTCAAACTGCCCAACCAACTGCCGCGTTGCTCATTAGCCGTATAT
TCGTCATTGATAAGCGCGAATCCGTGAAACATGTCCTTCATCTTGATGGC
CCGTGAGCAGGCGTAGTTCTTGGTGGCCACGTACATCTTGGTGAGGAACT
CGGGCATTTGTTTCTGAGTAACCCAGGACTTAATATTCTGCGGTATGGGT
ATGCCCGGATCGTCGAAGTACGTGAGGACAAAGTGGAGGCCTGGCTCATG
GAAACCGCGAAAGGGCTTGATGACCATCAGGCTCCAATAGTCAGTGACGC
GAACTTTTCCAGACAACGCCGGATAGGTGTTGTGCGTGGCTCCGCGGTTG
CAAATGAATATCAGCTTCTTGTTGTCGTCTTTTATGTAGCGGCGACAATA
GACGTAGTCGCGATTGGCGAACAGTCGTGGCCACTGCATCTCCCAGTATA
TCAGATGCGAGTTGCTGCCCGGGACGGGATCCTCGCTGATGAGCTCAAGT
CTTAGGGCCGTGTCGTCCCACTGGCGACGGTAATCCAAATCCGTTTGAAC
GTGGAGGAAGTCGTCCGCTGTGATGTCGTCGAATCGAGCATAAACCTTGT
ATGAGTATAAGGAGGAGCGCTCCTGCCGCCGCCAAATGCTGAATTCGTTT
TTGCTAAAGTACGGCTCCCATTTTTGGTCGTCCTGGGCCTGAATGCGTAC
CGTTCCGGCCGGTGCATTGCGCACGTCCAGATCCAACGGTCGCAGACAAT
TGCTGATGCTGGTGTCCGGATCCGTCTCCGCCTCTTTGCTGG

BO04411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PA 1278 CG6565-RA 452..1275 842..19 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 779..1602 842..19 4120 100 Minus
CG6565-RB 2088 CG6565-RB 937..1760 842..19 4120 100 Minus
CG6565-RA 1930 CG6565-RA 779..1602 842..19 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13375209..13375837 647..19 3145 100 Minus
2L 23513712 2L 13374955..13375153 842..644 995 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:34:46 has no hits.

BO04411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:16 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 452..1278 15..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:07 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 452..1278 15..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:37 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 779..1610 8..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:44 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 779..1610 8..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:44 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13374955..13375151 646..842 100 -> Minus
2L 13375211..13375845 8..645 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:37 Download gff for BO04411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374955..13375151 646..842 100 -> Minus
arm_2L 13375211..13375845 8..645 99   Minus

BO04411.5prime Sequence

862 bp (734 high quality bases) assembled on 2005-11-29

> BO04411.5prime
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCCCCATCGCG
ACTACGTCTATT

BO04411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PA 1278 CG6565-RA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 327..1174 16..862 4200 99.8 Plus
CG6565-RB 2088 CG6565-RB 485..1332 16..862 4200 99.8 Plus
CG6565-RA 1930 CG6565-RA 327..1174 16..862 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13374503..13375153 16..666 3255 100 Plus
2L 23513712 2L 13375209..13375409 663..862 940 99 Plus
Blast to na_te.dros performed on 2015-02-13 02:04:14 has no hits.

BO04411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:16 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:08 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:19 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 318..1174 7..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:54 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 318..1174 7..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:54 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13374494..13375151 7..664 99 -> Plus
2L 13375211..13375409 665..862 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:19 Download gff for BO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374494..13375151 7..664 99 -> Plus
arm_2L 13375211..13375409 665..862 98   Plus

BO04411.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629749

> BO04411.complete
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGTCGCCGCTACATAAAAGACGACAACAAGAAGCTGAT
ATTCATTTGCAACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTG
GAAAAGTTCGCGTCACTGACTATTGGAGCCTGATGGTCATCAAGCCCTTT
CGCGGTTTCCATGAGCCAGGCCTCCACTTTGTCCTCACGTACTTCGACGA
TCCGGGCATACCCATACCGCAGAATATTAAGTCCTGGGTTACTCAGAAAC
AAATGCCCGAGTTCCTCACCAAGATGTACGTGGCCACCAAGAACTACGCC
TGCTCACGGGCCATCAAGATGAAGGACATGTTTCACGGATTCGCGCTTAT
CAATGACGAATATACGGCTAATGAGCAACGCGGCAGTTGGTTGGGCAGTT
TGAGCCGGCGCAAGGTCAATAGTAAACCCGAAGCAGGTCGTGCAAGCTTT
CTAGACCAT

BO04411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 1278 CG6565-PC 1..1275 17..1291 6375 100 Plus
CG6565-RB 1278 CG6565-PB 1..1275 17..1291 6375 100 Plus
CG6565-RA 1278 CG6565-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RC 2169 CG6565-RC 327..1602 16..1291 6380 100 Plus
CG6565-RB 2088 CG6565-RB 485..1760 16..1291 6380 100 Plus
CG6565-RA 1930 CG6565-RA 327..1602 16..1291 6380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13374503..13375153 16..666 3255 100 Plus
2L 23513712 2L 13375209..13375837 663..1291 3145 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:47:15 has no hits.

BO04411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:55 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 17..1295 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:54 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 316..1608 7..1302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:13 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 328..1602 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:55 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 316..1608 7..1302 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:22 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 328..1602 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:22 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13374504..13375151 17..664 100 -> Plus
2L 13375211..13375837 665..1293 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:13 Download gff for BO04411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374504..13375151 17..664 100 -> Plus
arm_2L 13375211..13375837 665..1293 99   Plus

BO04411.pep Sequence

Translation from 16 to 1309

> BO04411.pep
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGRASFLDH

BO04411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PC 425 CG6565-PC 1..425 1..425 2297 100 Plus
CG6565-PB 425 CG6565-PB 1..425 1..425 2297 100 Plus
CG6565-PA 425 CG6565-PA 1..425 1..425 2297 100 Plus