Clone Sequence Records
BO04411.3prime Sequence
842 bp (755 high quality bases) assembled on 2005-12-01
> BO04411.3prime
ATGGTCTAGAAAGCTTGCACGACCTGCTTCGGGTTTACTATTGACCTTGC
GCCGGCTCAAACTGCCCAACCAACTGCCGCGTTGCTCATTAGCCGTATAT
TCGTCATTGATAAGCGCGAATCCGTGAAACATGTCCTTCATCTTGATGGC
CCGTGAGCAGGCGTAGTTCTTGGTGGCCACGTACATCTTGGTGAGGAACT
CGGGCATTTGTTTCTGAGTAACCCAGGACTTAATATTCTGCGGTATGGGT
ATGCCCGGATCGTCGAAGTACGTGAGGACAAAGTGGAGGCCTGGCTCATG
GAAACCGCGAAAGGGCTTGATGACCATCAGGCTCCAATAGTCAGTGACGC
GAACTTTTCCAGACAACGCCGGATAGGTGTTGTGCGTGGCTCCGCGGTTG
CAAATGAATATCAGCTTCTTGTTGTCGTCTTTTATGTAGCGGCGACAATA
GACGTAGTCGCGATTGGCGAACAGTCGTGGCCACTGCATCTCCCAGTATA
TCAGATGCGAGTTGCTGCCCGGGACGGGATCCTCGCTGATGAGCTCAAGT
CTTAGGGCCGTGTCGTCCCACTGGCGACGGTAATCCAAATCCGTTTGAAC
GTGGAGGAAGTCGTCCGCTGTGATGTCGTCGAATCGAGCATAAACCTTGT
ATGAGTATAAGGAGGAGCGCTCCTGCCGCCGCCAAATGCTGAATTCGTTT
TTGCTAAAGTACGGCTCCCATTTTTGGTCGTCCTGGGCCTGAATGCGTAC
CGTTCCGGCCGGTGCATTGCGCACGTCCAGATCCAACGGTCGCAGACAAT
TGCTGATGCTGGTGTCCGGATCCGTCTCCGCCTCTTTGCTGG
BO04411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PA | 1278 | CG6565-RA | 452..1275 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 779..1602 | 842..19 | 4120 | 100 | Minus |
CG6565-RB | 2088 | CG6565-RB | 937..1760 | 842..19 | 4120 | 100 | Minus |
CG6565-RA | 1930 | CG6565-RA | 779..1602 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13375209..13375837 | 647..19 | 3145 | 100 | Minus |
2L | 23513712 | 2L | 13374955..13375153 | 842..644 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:34:46 has no hits.
BO04411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:16 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 452..1278 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:07 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 452..1278 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:58:37 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 779..1610 | 8..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:12:44 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 779..1610 | 8..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:12:44 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374955..13375151 | 646..842 | 100 | -> | Minus |
2L | 13375211..13375845 | 8..645 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:58:37 Download gff for
BO04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374955..13375151 | 646..842 | 100 | -> | Minus |
arm_2L | 13375211..13375845 | 8..645 | 99 | | Minus |
BO04411.5prime Sequence
862 bp (734 high quality bases) assembled on 2005-11-29
> BO04411.5prime
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCCCCATCGCG
ACTACGTCTATT
BO04411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PA | 1278 | CG6565-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 327..1174 | 16..862 | 4200 | 99.8 | Plus |
CG6565-RB | 2088 | CG6565-RB | 485..1332 | 16..862 | 4200 | 99.8 | Plus |
CG6565-RA | 1930 | CG6565-RA | 327..1174 | 16..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13374503..13375153 | 16..666 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 13375209..13375409 | 663..862 | 940 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:04:14 has no hits.
BO04411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:16 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:08 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:19 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 318..1174 | 7..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:54 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 318..1174 | 7..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:54 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374494..13375151 | 7..664 | 99 | -> | Plus |
2L | 13375211..13375409 | 665..862 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:19 Download gff for
BO04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374494..13375151 | 7..664 | 99 | -> | Plus |
arm_2L | 13375211..13375409 | 665..862 | 98 | | Plus |
BO04411.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629749
> BO04411.complete
GAAGTTATCAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGA
ACCAGTCCCGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATT
TTCGCCCAGCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTC
GGTGTATGGAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCC
GGGAGCTGCAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTC
GTCGGGCTGAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAA
GGAGCGCCTGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGT
TTATCAACGCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAG
AAGATGAAATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGG
CCAATCCCAGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCA
GCATCAGCAATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCG
GCCGGAACGGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTA
CTTTAGCAAAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCT
TATACTCATACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGAC
TTCCTCCACGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACAC
GGCCCTAAGACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACT
CGCATCTGATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCAATCGC
GACTACGTCTATTGTCGCCGCTACATAAAAGACGACAACAAGAAGCTGAT
ATTCATTTGCAACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTG
GAAAAGTTCGCGTCACTGACTATTGGAGCCTGATGGTCATCAAGCCCTTT
CGCGGTTTCCATGAGCCAGGCCTCCACTTTGTCCTCACGTACTTCGACGA
TCCGGGCATACCCATACCGCAGAATATTAAGTCCTGGGTTACTCAGAAAC
AAATGCCCGAGTTCCTCACCAAGATGTACGTGGCCACCAAGAACTACGCC
TGCTCACGGGCCATCAAGATGAAGGACATGTTTCACGGATTCGCGCTTAT
CAATGACGAATATACGGCTAATGAGCAACGCGGCAGTTGGTTGGGCAGTT
TGAGCCGGCGCAAGGTCAATAGTAAACCCGAAGCAGGTCGTGCAAGCTTT
CTAGACCAT
BO04411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 1278 | CG6565-PC | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG6565-RB | 1278 | CG6565-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG6565-RA | 1278 | CG6565-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-RC | 2169 | CG6565-RC | 327..1602 | 16..1291 | 6380 | 100 | Plus |
CG6565-RB | 2088 | CG6565-RB | 485..1760 | 16..1291 | 6380 | 100 | Plus |
CG6565-RA | 1930 | CG6565-RA | 327..1602 | 16..1291 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13374503..13375153 | 16..666 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 13375209..13375837 | 663..1291 | 3145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:15 has no hits.
BO04411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:55 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 1..1278 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:54 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 316..1608 | 7..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:13 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 328..1602 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:55 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 316..1608 | 7..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:22 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6565-RA | 328..1602 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:22 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13374504..13375151 | 17..664 | 100 | -> | Plus |
2L | 13375211..13375837 | 665..1293 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:13 Download gff for
BO04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13374504..13375151 | 17..664 | 100 | -> | Plus |
arm_2L | 13375211..13375837 | 665..1293 | 99 | | Plus |
BO04411.pep Sequence
Translation from 16 to 1309
> BO04411.pep
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGRASFLDH
BO04411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6565-PC | 425 | CG6565-PC | 1..425 | 1..425 | 2297 | 100 | Plus |
CG6565-PB | 425 | CG6565-PB | 1..425 | 1..425 | 2297 | 100 | Plus |
CG6565-PA | 425 | CG6565-PA | 1..425 | 1..425 | 2297 | 100 | Plus |