Clone Sequence Records
BO04415.3prime Sequence
829 bp (828 high quality bases) assembled on 2005-12-01
> BO04415.3prime
ATGGTCTAGAAAGCTTGCACCCCGTTCACAAATAATTTCCACAGCATTGG
GCTCCATTAAAACGGACTCCAAGCACCTTTGCACAGCTGAGCCAAGAATC
TCGTCCAGCAGGAAGTTCACCAGATTTTCATCGCTTACAAATCGCCATAG
GTTCATTTGCAGATAATGAGCATCCACCTGAATCTGCTGAAGTCCGAATT
TGCTAAAAGTTCTCAGCCTCACGCATTCCAAAAGGGTTTTTAGACCAATT
TTAATAATTCCCATTATAATTGAGGCCTTGGTGAACTCTACTGAAGTAAA
GATTTCCACTCGCTCCGAAAACAAGCGATGTATGTTGGACACATAGCTGG
ATTCCAGCTGCGAAGGCGTGTAGTTTGACCAATTGGAACGATACTGTGGC
TTTGAGGTGGAAGCAAAGTTACTGAAATATGTTTTTCGGCTAGAGTCACT
GCTCGCTGTGGTGCGGAATCCTGACGTTGCATTAGTGTTTGCCTCGTACA
GACTGGCCACCACCGTCTCGATGCTGCCGAGTTCCTCCACCACACGCTTC
ATCACCGCACGAACGGATCGTGGTTCCAGGCAGTTAAGCCAATCCCTTGT
TTCCACGCTCTTGCGTAACATTTGCGAGATATTGGTGCCCTGCAGCCGCA
CATAGGCGTCCAATAGTGACTGTGCCGTCTCCCGCATTTCAGCACATATC
TCAGTTTCGTGGGTAAGCGTTGCACTGTTCTCCGAGTCGATTTCGTACAG
GTCATCAACCAGAGCAATCAGTATGTGAACGCCCTGTTGCTCGAGTTCCA
GACACGTTTTCGACAGCACCAGCAGTAGA
BO04415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 2223 | CG15087-RA | 1410..2220 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 1500..2310 | 829..19 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18708587..18709118 | 238..769 | 2660 | 100 | Plus |
| 2R | 25286936 | 2R | 18708422..18708534 | 125..237 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 18708260..18708365 | 19..124 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 18709170..18709230 | 769..829 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:15:32 has no hits.
BO04415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:21 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1411..2223 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:15 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1411..2223 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:01:40 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 1501..2310 | 19..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:39 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 1501..2310 | 19..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:39 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18708260..18708365 | 19..124 | 100 | <- | Plus |
| 2R | 18708422..18708534 | 125..237 | 100 | <- | Plus |
| 2R | 18708587..18709117 | 238..768 | 100 | <- | Plus |
| 2R | 18709170..18709229 | 769..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:01:40 Download gff for
BO04415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14596675..14596734 | 769..828 | 100 | | Plus |
| arm_2R | 14595765..14595870 | 19..124 | 100 | <- | Plus |
| arm_2R | 14595927..14596039 | 125..237 | 100 | <- | Plus |
| arm_2R | 14596092..14596622 | 238..768 | 100 | <- | Plus |
BO04415.5prime Sequence
896 bp (725 high quality bases) assembled on 2005-12-01
> BO04415.5prime
GAAGTTATCAGTCGACATGGCTGAAACCAAAGCCAATCCCTTCGACATGG
ACAGCTCCAGCTTCGATGCGGAAAAGTATCTGGAAAGGTTGCTCAAGGAT
TGCTCCTTAAAGCAAATAATGGATACGGAGGCGGCGGTGGTCAAGGACAC
ACAGACATTGCACTCTGATATGCAGACGCTGGTCTACGAGAATTACAACA
AATTCATCTCCGCCACGGATACAATTCGCCGGATGAAAGATGACTTCAAG
CAGATGGAAACGGATGTGAACCTACTGATGACCAAGATGCAATCCATAAC
GACTTTTAGTGAGCAAATAACCGGAACGCTGCAGGGCACCAGATCGCAAC
TATGTCGCCTGTCCGAGAAACACTCGCTCCTCAAAAGGCTGCAGTTTCTC
TCAACTCTGCCAGCTAAACTGAAGTCCCTCATCGAGGAACAGAACTACGC
ACAAGCTGTCCAGGACTACCTGCATGCCCAGAAGGTGTTCGCCCAGTACG
GTCGACAGCCGTCCTTCGATGGAATCCAGCGAGATTGCGACGCCATCATG
GCAGATCTCAAGGAGCAATTGCGAAGTGACTTTCAAAGGGCTGGGAACAC
GGCCCAATCCTTGACGGAAATTGGAGAGCTACTCCTGCAGCTGGACGAAA
AGACTTCGGATCTGGCAAGCGAAATGCTGACTTGCGCTGGCAAACGACTG
CACGAGCAAATCGTCATGCTGCAGGATCAAACAGAGCGTGATATGCTGGA
GTTTGTGGACATGGGCATCGATGGTTTCCTCAACGATCTGGCACTGGTAG
TGACTTCCTACTTTGACATGTTTGTGGCCAAGCACTACGAGCATGAGCGC
GATGACTTTCAGGAGAACGCCCTGCAGGAGCTAAATGTCTTCTTCA
BO04415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 2223 | CG15087-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 91..970 | 17..896 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18709867..18710621 | 849..95 | 3775 | 100 | Minus |
| 2R | 25286936 | 2R | 18710694..18710775 | 98..17 | 410 | 100 | Minus |
| 2R | 25286936 | 2R | 18709760..18709807 | 896..849 | 225 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:26:40 has no hits.
BO04415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:22 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:16 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:37 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..969 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:38 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..969 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:38 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18709761..18709806 | 850..895 | 97 | <- | Minus |
| 2R | 18709867..18710618 | 98..849 | 100 | <- | Minus |
| 2R | 18710695..18710775 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:37 Download gff for
BO04415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14598200..14598280 | 17..97 | 100 | | Minus |
| arm_2R | 14597266..14597311 | 850..895 | 97 | <- | Minus |
| arm_2R | 14597372..14598123 | 98..849 | 100 | <- | Minus |
BO04415.complete Sequence
2254 bp assembled on 2008-08-14
GenBank Submission: FJ629750
> BO04415.complete
GAAGTTATCAGTCGACATGGCTGAAACCAAAGCCAATCCCTTCGACATGG
ACAGCTCCAGCTTCGATGCGGAAAAGTATCTGGAAAGGTTGCTCAAGGAT
TGCTCCTTAAAGCAAATAATGGATACGGAGGCGGCGGTGGTCAAGGACAC
ACAGACATTGCACTCTGATATGCAGACGCTGGTCTACGAGAATTACAACA
AATTCATCTCCGCCACGGATACAATTCGCCGGATGAAAGATGACTTCAAG
CAGATGGAAACGGATGTGAACCTACTGATGACCAAGATGCAATCCATAAC
GACTTTTAGTGAGCAAATAACCGGAACGCTGCAGGGCACCAGATCGCAAC
TATGTCGCCTGTCCGAGAAACACTCGCTCCTCAAAAGGCTGCAGTTTCTC
TCAACTCTGCCAGCTAAACTGAAGTCCCTCATCGAGGAACAGAACTACGC
ACAAGCTGTCCAGGACTACCTGCATGCCCAGAAGGTGTTCGCCCAGTACG
GTCGACAGCCGTCCTTCGATGGAATCCAGCGAGATTGCGACGCCATCATG
GCAGATCTCAAGGAGCAATTGCGAAGTGACTTTCAAAGGGCTGGGAACAC
GGCCCAATCCTTGACGGAAATTGGAGAGCTACTCCTGCAGCTGGACGAAA
AGACTTCGGATCTGGCAAGCGAAATGCTGACTTGCGCTGGCAAACGACTG
CACGAGCAAATCGTCATGCTGCAGGATCAAACAGAGCGTGATATGCTGGA
GTTTGTGGACATGGGCATCGATGGTTTCCTCAACGATCTGGCACTGGTAG
TGACTTCCTACTTTGACATGTTTGTGGCCAAGCACTACGAGCATGAGCGC
GATGACTTTCAGGAGAACGCCCTGCAGGAGCTAAATGTCTTCCTCAATCA
GAACATCGAAAAGTATCTGACACTCGTCCAGGATCGTGTTGAGTCCGACA
TTGGCTACGGCGATACCCAGGTAATGCTACGCGCTCTGGATCGACTTCAT
CGGCGCCTTCAGGCCATGCGAAATATCTGCCGCGGCTTGGAGGTCCAACG
CAACACAGTATCTATCATTATTTCGGCTGCCCACCAACTATGCGATGCCC
ATGCCAAAAACCTCAAAGATCACTTTGCCGACAGTTTGAGTGCGGTTCGT
CTGTCGCTGGTTTCTGCCAAGAGCGATGCAGCTGCTGGTCTCAATCTCGG
TGATCTGATAAGCAACCTTTATGTGTCCATGGTGGAGAAAATAAAGGGTG
TACTGCAGGACTTGCTTATATTCCTGCGCACCGACTGGTCGTTTAACATC
AAGGCGGAACACAAGGGCGCCCTGTGCGTAGAGGGCATTCGGGAGAACCT
ACTCATTGGCTTCCTACGTCATATTGCCAAGGTGATGTGTGGTTTCGGAG
ATGCCTCCAGCTCCAGTCCACCCAATCTACTGCTGGTGCTGTCGAAAACG
TGTCTGGAACTCGAGCAACAGGGCGTTCACATACTGATTGCTCTGGTTGA
TGACCTGTACGAAATCGACTCGGAGAACAGTGCAACGCTTACCCACGAAA
CTGAGATATGTGCTGAAATGCGGGAGACGGCACAGTCACTATTGGACGCC
TATGTGCGGCTGCAGGGCACCAATATCTCGCAAATGTTACGCAAGAGCGT
GGAAACAAGGGATTGGCTTAACTGCCTGGAACCACGATCCGTTCGTGCGG
TGATGAAGCGTGTGGTGGAGGAACTCGGCAGCATCGAGACGGTGGTGGCC
AGTCTGTACGAGGCAAACACTAATGCAACGTCAGGATTCCGCACCACAGC
GAGCAGTGACTCTAGCCGAAAAACATATTTCAGTAACTTTGCTTCCACCT
CAAAGCCACAGTATCGTTCCAATTGGTCAAACTACACGCCTTCGCAGCTG
GAATCCAGCTATGTGTCCAACATACATCGCTTGTTTTCGGAGCGAGTGGA
AATCTTTACTTCAGTAGAGTTCACCAAGGCCTCAATTATAATGGGAATTA
TTAAAATTGGTCTAAAAACCCTTTTGGAATGCGTGAGGCTGAGAACTTTT
AGCAAATTCGGACTTCAGCAGATTCAGGTGGATGCTCATTATCTGCAAAT
GAACCTATGGCGATTTGTAAGCGATGAAAATCTGGTGAACTTCCTGCTGG
ACGAGATTCTTGGCTCAGCTGTGCAAAGGTGCTTGGAGTCCGTTTTAATG
GAGCCCAATGCTGTGGAAATTATTTGTGAACGGGGTGCAAGCTTTCTAGA
CCAT
BO04415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2223 | CG15087-PA | 1..2220 | 17..2236 | 11100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 91..2310 | 17..2236 | 11100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18709867..18710621 | 849..95 | 3775 | 100 | Minus |
| 2R | 25286936 | 2R | 18709170..18709807 | 1486..849 | 3190 | 100 | Minus |
| 2R | 25286936 | 2R | 18708587..18709118 | 2017..1486 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 18708422..18708534 | 2130..2018 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 18708260..18708365 | 2236..2131 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 18710694..18710775 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:08:24 has no hits.
BO04415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:56 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 86..2305 | 17..2236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:32 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..2310 | 17..2238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:30 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 86..2305 | 17..2238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:45 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..2310 | 17..2238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:45 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18708258..18708365 | 2131..2238 | 98 | <- | Minus |
| 2R | 18708422..18708534 | 2018..2130 | 100 | <- | Minus |
| 2R | 18708587..18709117 | 1487..2017 | 100 | <- | Minus |
| 2R | 18709170..18709806 | 850..1486 | 100 | <- | Minus |
| 2R | 18709867..18710618 | 98..849 | 100 | <- | Minus |
| 2R | 18710695..18710775 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:32 Download gff for
BO04415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14595763..14595870 | 2131..2238 | 98 | <- | Minus |
| arm_2R | 14595927..14596039 | 2018..2130 | 100 | <- | Minus |
| arm_2R | 14596092..14596622 | 1487..2017 | 100 | <- | Minus |
| arm_2R | 14596675..14597311 | 850..1486 | 100 | <- | Minus |
| arm_2R | 14597372..14598123 | 98..849 | 100 | <- | Minus |
| arm_2R | 14598200..14598280 | 17..97 | 100 | | Minus |
BO04415.pep Sequence
Translation from 16 to 2254
> BO04415.pep
MAETKANPFDMDSSSFDAEKYLERLLKDCSLKQIMDTEAAVVKDTQTLHS
DMQTLVYENYNKFISATDTIRRMKDDFKQMETDVNLLMTKMQSITTFSEQ
ITGTLQGTRSQLCRLSEKHSLLKRLQFLSTLPAKLKSLIEEQNYAQAVQD
YLHAQKVFAQYGRQPSFDGIQRDCDAIMADLKEQLRSDFQRAGNTAQSLT
EIGELLLQLDEKTSDLASEMLTCAGKRLHEQIVMLQDQTERDMLEFVDMG
IDGFLNDLALVVTSYFDMFVAKHYEHERDDFQENALQELNVFLNQNIEKY
LTLVQDRVESDIGYGDTQVMLRALDRLHRRLQAMRNICRGLEVQRNTVSI
IISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISN
LYVSMVEKIKGVLQDLLIFLRTDWSFNIKAEHKGALCVEGIRENLLIGFL
RHIAKVMCGFGDASSSSPPNLLLVLSKTCLELEQQGVHILIALVDDLYEI
DSENSATLTHETEICAEMRETAQSLLDAYVRLQGTNISQMLRKSVETRDW
LNCLEPRSVRAVMKRVVEELGSIETVVASLYEANTNATSGFRTTASSDSS
RKTYFSNFASTSKPQYRSNWSNYTPSQLESSYVSNIHRLFSERVEIFTSV
EFTKASIIMGIIKIGLKTLLECVRLRTFSKFGLQQIQVDAHYLQMNLWRF
VSDENLVNFLLDEILGSAVQRCLESVLMEPNAVEIICERGASFLDH
BO04415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-PA | 740 | CG15087-PA | 1..740 | 1..740 | 3728 | 100 | Plus |
