Clone BO04417 Report

Search the DGRC for BO04417

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG10495-RA
Protein status:BO04417.pep: validated full length
Sequenced Size:1222

Clone Sequence Records

BO04417.3prime Sequence

877 bp (815 high quality bases) assembled on 2005-12-01

> BO04417.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGTCACCAAAGAGTCCTCCCAGTTCCA
AATCTTCTCCGCCAGTTCCGGTCAACTGGTGTGCTCTGAATACCGTAAAG
AATTTTCCGTCGCTTTTCGAACTCCAGGCCTGCTCATCCGACTCGGCGGC
GATGTGCCGGGCGTGCTTGGGCGGTGTGAAGTGGGTGTACGTGCAATCCG
TGTAGTCAGCCGATGGAGGGTCAACCTCACTATATTCCAGATTGTAGTGC
TCCTTCAGGAAGTCCACGACCTGTTCTTTGGAACCCAAACTGTTGAATTG
CACTCGAAGATCTCGCTTCATTTGAGCGCTATACATAAAGGTGAGGTGGT
GGTGAAAGCACTGGAAAAGCAGGTTATCCCCGGCAGCAGAGGCTATATCT
AGCCACTGTTGTACACAGGACAGTGGCGTTGTTTTACCATCTGGATAGTT
GCTATTGAAGAGAGCCGGATTAGCAAGCAAGCCTCGAGCAGCCATTACAC
CAGCTGCTCCCGTCTGTTCATGCATATCGCAAGCATCCCTATAGCTCTCC
ACATTGCCGTTGACTATCAGGGGGATCTGCAGGGATTGGCGCACCTGAGA
CATGGCTGGGATGTCTAGCGTGTCCTTAGAGTGTTTTTGGGCTGGCGTCC
GACCGTGAAGAGTTAGAAAGGTGACGCCCGCGCTCTCCAACTGACGGGCT
AAATCGATAGTGCGCTGCAAGGACTCCTCTCCTCCCAGCAGACGCATCTT
CACCGAGACACTGAAATCCCCGGGCAGTGTGCGCCTCACCTCCTGAACCA
CTTGATGCACTAGCTCCGGCTGGCGCAGCATTTCGCAACCGTAACCTTTC
GCCATTGCCCAGCTTTGTGGACATCCC

BO04417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-PA 1191 CG10495-RA 331..1188 876..19 4265 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-RA 1371 CG10495-RA 418..1275 876..19 4275 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19063773..19064630 876..19 4275 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 05:33:54 has no hits.

BO04417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:25 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-PA 329..1191 15..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:20 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-PA 329..1191 15..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:52 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 416..1281 11..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:00 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 416..1281 11..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:00 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19063771..19064636 11..877 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:52 Download gff for BO04417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19063771..19064636 11..877 99   Minus

BO04417.5prime Sequence

814 bp (749 high quality bases) assembled on 2005-11-29

> BO04417.5prime
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TATTCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGTACAA

BO04417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-PA 1191 CG10495-RA 1..798 17..814 3965 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-RA 1371 CG10495-RA 87..885 16..814 3980 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19063531..19064240 105..814 3535 99.9 Plus
2L 23513712 2L 19063381..19063469 16..104 445 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:34:04 has no hits.

BO04417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:26 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-PA 1..796 17..812 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:21 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-PA 1..796 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:54 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 87..883 16..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:14 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 87..883 16..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:14 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19063381..19063469 16..104 100 -> Plus
2L 19063531..19064238 105..812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:54 Download gff for BO04417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19063381..19063469 16..104 100 -> Plus
arm_2L 19063531..19064238 105..812 99   Plus

BO04417.complete Sequence

1222 bp (1222 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629751

> BO04417.complete
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TAATCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGTACAACAGTGGCTAGATATAGCCTCTGCTGCCGGGGATAAC
CTGCTTTTCCAGTGCTTTCACCACCACCTCACCTTTATGTATAGCGCTCA
AATGAAGCGAGATCTTCGAGTGCAATTCAACAGTTTGGGTTCCAAAGAAC
AGGTCGTGGACTTCCTGAAGGAGCACTACAATCTGGAATATAGTGAGGTT
GACCCTCCATCGGCTGACTACACGGATTGCACGTACACCCACTTCACACC
GCCCAAGCACGCCCGGCACATCGCCGCCGAGTCGGATGAGCAGGCCTGGA
GTTCGAAAAGCGACGGAAAATTCTTTACGGTATTCAGAGCACACCAGTTG
ACCGGAACTGGCGGAGAAGATTTGGAACTGGGAGGACTCTTTGGTGACGA
GGAGGCAAGCTTTCTAGACCAT

BO04417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-RA 1191 CG10495-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-RA 1371 CG10495-RA 87..1275 16..1204 5945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19063531..19064630 105..1204 5500 100 Plus
2L 23513712 2L 19063381..19063469 16..104 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:32:06 has no hits.

BO04417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:01 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:34 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 57..1251 16..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:53 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 88..1275 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:01 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 57..1251 16..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:15 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 88..1275 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:15 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19063382..19063469 17..104 100 -> Plus
2L 19063531..19064630 105..1206 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:53 Download gff for BO04417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19063382..19063469 17..104 100 -> Plus
arm_2L 19063531..19064630 105..1206 99   Plus

BO04417.pep Sequence

Translation from 16 to 1222

> BO04417.pep
MHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLA
FTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIY
PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSV
SVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIP
AMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF
NSNYPDGKTTPLSCVQQWLDIASAAGDNLLFQCFHHHLTFMYSAQMKRDL
RVQFNSLGSKEQVVDFLKEHYNLEYSEVDPPSADYTDCTYTHFTPPKHAR
HIAAESDEQAWSSKSDGKFFTVFRAHQLTGTGGEDLELGGLFGDEEASFL
DH

BO04417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-PA 396 CG10495-PA 1..396 1..396 2081 100 Plus
CG3645-PC 505 CG3645-PC 31..386 26..370 359 29.2 Plus
CG3645-PB 505 CG3645-PB 31..386 26..370 359 29.2 Plus
CG3645-PA 505 CG3645-PA 31..386 26..370 359 29.2 Plus
CG1434-PB 473 CG1434-PB 27..280 26..269 201 23.6 Plus