Clone Sequence Records
BO04417.3prime Sequence
877 bp (815 high quality bases) assembled on 2005-12-01
> BO04417.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGTCACCAAAGAGTCCTCCCAGTTCCA
AATCTTCTCCGCCAGTTCCGGTCAACTGGTGTGCTCTGAATACCGTAAAG
AATTTTCCGTCGCTTTTCGAACTCCAGGCCTGCTCATCCGACTCGGCGGC
GATGTGCCGGGCGTGCTTGGGCGGTGTGAAGTGGGTGTACGTGCAATCCG
TGTAGTCAGCCGATGGAGGGTCAACCTCACTATATTCCAGATTGTAGTGC
TCCTTCAGGAAGTCCACGACCTGTTCTTTGGAACCCAAACTGTTGAATTG
CACTCGAAGATCTCGCTTCATTTGAGCGCTATACATAAAGGTGAGGTGGT
GGTGAAAGCACTGGAAAAGCAGGTTATCCCCGGCAGCAGAGGCTATATCT
AGCCACTGTTGTACACAGGACAGTGGCGTTGTTTTACCATCTGGATAGTT
GCTATTGAAGAGAGCCGGATTAGCAAGCAAGCCTCGAGCAGCCATTACAC
CAGCTGCTCCCGTCTGTTCATGCATATCGCAAGCATCCCTATAGCTCTCC
ACATTGCCGTTGACTATCAGGGGGATCTGCAGGGATTGGCGCACCTGAGA
CATGGCTGGGATGTCTAGCGTGTCCTTAGAGTGTTTTTGGGCTGGCGTCC
GACCGTGAAGAGTTAGAAAGGTGACGCCCGCGCTCTCCAACTGACGGGCT
AAATCGATAGTGCGCTGCAAGGACTCCTCTCCTCCCAGCAGACGCATCTT
CACCGAGACACTGAAATCCCCGGGCAGTGTGCGCCTCACCTCCTGAACCA
CTTGATGCACTAGCTCCGGCTGGCGCAGCATTTCGCAACCGTAACCTTTC
GCCATTGCCCAGCTTTGTGGACATCCC
BO04417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-PA | 1191 | CG10495-RA | 331..1188 | 876..19 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-RA | 1371 | CG10495-RA | 418..1275 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19063773..19064630 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:33:54 has no hits.
BO04417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:25 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-PA | 329..1191 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:20 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-PA | 329..1191 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:52 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 416..1281 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:00 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 416..1281 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:00 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19063771..19064636 | 11..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:52 Download gff for
BO04417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19063771..19064636 | 11..877 | 99 | | Minus |
BO04417.5prime Sequence
814 bp (749 high quality bases) assembled on 2005-11-29
> BO04417.5prime
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TATTCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGTACAA
BO04417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-PA | 1191 | CG10495-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-RA | 1371 | CG10495-RA | 87..885 | 16..814 | 3980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19063531..19064240 | 105..814 | 3535 | 99.9 | Plus |
2L | 23513712 | 2L | 19063381..19063469 | 16..104 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:34:04 has no hits.
BO04417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:26 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:21 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:54 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 87..883 | 16..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:14 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 87..883 | 16..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:14 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19063381..19063469 | 16..104 | 100 | -> | Plus |
2L | 19063531..19064238 | 105..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:54 Download gff for
BO04417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19063381..19063469 | 16..104 | 100 | -> | Plus |
arm_2L | 19063531..19064238 | 105..812 | 99 | | Plus |
BO04417.complete Sequence
1222 bp (1222 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629751
> BO04417.complete
GAAGTTATCAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACA
TCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCT
CCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAA
TGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACA
ACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAG
CCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTC
CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGAT
GTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGC
CAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCC
CGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGT
CCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTC
ACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAGGA
CACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGATCC
CCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGCGATATG
CATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTTGCTTGC
TAATCCGGCTCTCTTCAATAGCAACTATCCAGATGGTAAAACAACGCCAC
TGTCCTGTGTACAACAGTGGCTAGATATAGCCTCTGCTGCCGGGGATAAC
CTGCTTTTCCAGTGCTTTCACCACCACCTCACCTTTATGTATAGCGCTCA
AATGAAGCGAGATCTTCGAGTGCAATTCAACAGTTTGGGTTCCAAAGAAC
AGGTCGTGGACTTCCTGAAGGAGCACTACAATCTGGAATATAGTGAGGTT
GACCCTCCATCGGCTGACTACACGGATTGCACGTACACCCACTTCACACC
GCCCAAGCACGCCCGGCACATCGCCGCCGAGTCGGATGAGCAGGCCTGGA
GTTCGAAAAGCGACGGAAAATTCTTTACGGTATTCAGAGCACACCAGTTG
ACCGGAACTGGCGGAGAAGATTTGGAACTGGGAGGACTCTTTGGTGACGA
GGAGGCAAGCTTTCTAGACCAT
BO04417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-RA | 1191 | CG10495-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-RA | 1371 | CG10495-RA | 87..1275 | 16..1204 | 5945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19063531..19064630 | 105..1204 | 5500 | 100 | Plus |
2L | 23513712 | 2L | 19063381..19063469 | 16..104 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:32:06 has no hits.
BO04417.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:01 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 1..1191 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:34 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 57..1251 | 16..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:53 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 88..1275 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:01 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 57..1251 | 16..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:15 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10495-RA | 88..1275 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:15 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19063382..19063469 | 17..104 | 100 | -> | Plus |
2L | 19063531..19064630 | 105..1206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:53 Download gff for
BO04417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19063382..19063469 | 17..104 | 100 | -> | Plus |
arm_2L | 19063531..19064630 | 105..1206 | 99 | | Plus |
BO04417.pep Sequence
Translation from 16 to 1222
> BO04417.pep
MHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLA
FTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIY
PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSV
SVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIP
AMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF
NSNYPDGKTTPLSCVQQWLDIASAAGDNLLFQCFHHHLTFMYSAQMKRDL
RVQFNSLGSKEQVVDFLKEHYNLEYSEVDPPSADYTDCTYTHFTPPKHAR
HIAAESDEQAWSSKSDGKFFTVFRAHQLTGTGGEDLELGGLFGDEEASFL
DH
BO04417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10495-PA | 396 | CG10495-PA | 1..396 | 1..396 | 2081 | 100 | Plus |
CG3645-PC | 505 | CG3645-PC | 31..386 | 26..370 | 359 | 29.2 | Plus |
CG3645-PB | 505 | CG3645-PB | 31..386 | 26..370 | 359 | 29.2 | Plus |
CG3645-PA | 505 | CG3645-PA | 31..386 | 26..370 | 359 | 29.2 | Plus |
CG1434-PB | 473 | CG1434-PB | 27..280 | 26..269 | 201 | 23.6 | Plus |