Clone Sequence Records
BO04421.3prime Sequence
886 bp (782 high quality bases) assembled on 2005-12-01
> BO04421.3prime
ATGGTCTAGAAAGCTTGCGTATGAGGGCCTGAAGCCATTGCGTTGCGAAA
GAACCGAATCGGGGCTCTTCAGCTCCATGGCCAGTTTGTAGCCCAGTTCA
GGACGACGATCCCGACCCTCGGCCATTGCCTTGACCTGATTAGTGTGGAC
TATAACGCCATCGCTGGTGTTGACCTTCTCCTTGGTGTGCTCGATGTCGT
GGACATCTGTACCCCGGCAGCAGTCGTCGATGAGGATGGTCCTGTATCCG
GCGGACAAAGCATCCACGGCTGTGGCTCCAACGCAGACGTCATAGGCCAA
TCCGCACACATAGATATCCGTGGCGCCCTTCATTTTCAGCTGGGCATTTA
GAGTGGTGTCAGATAGCTTCTTGTTGTCCCAGAACACCGAATAAGAGTCC
ACCTCGGGATTAGTGCCCTTGTACACCTTGATGCCGTGGTCGACCACTTT
GAGGTCCTTGTGCAGCTCGGCTCCCCACGAGTCCTGGACGCAGTGACGTG
GCCACAGGCGCTGCTTCATCGGCGGCGGTCCTGCGAAAATGACCGTGTCA
AACACCTTGGCGGAATCCGAGTCCAACGCGGAGGACTCGTCCATGGGGCG
CATTTTGACATTATCAATAAATGAAACGTGATCGCTGGGATGCCAGTCCA
ATGAGTAGAAGACGGCATCAAAGTCCACCGTATCCAGCAGCTTGTTGATG
GGCTCCAGTATCTCGTGTCCTTGCTGCTGTGCACTGCAATTACTTATATC
CAAGGAACCACTTATAAAATCATTTTGTACATCAACAATGAGGAACGCGT
TCACCGGTCGCACAATCGTTTTTATCCACTGGGTTCAACAGAATTTAAAC
TCCTCCCGGTCGATGAGGCCATCGCCATTCGTATCG
BO04421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31216-PA | 1074 | CG31216-RA | 204..1071 | 886..19 | 4265 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 361..1228 | 886..19 | 4295 | 99.7 | Minus |
Naam-RA | 1817 | CG31216-RA | 580..1447 | 886..19 | 4295 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697968 | 577..134 | 2220 | 100 | Minus |
3R | 32079331 | 3R | 19697310..19697446 | 713..577 | 685 | 100 | Minus |
3R | 32079331 | 3R | 19698062..19698180 | 137..19 | 595 | 100 | Minus |
3R | 32079331 | 3R | 19696551..19696656 | 817..712 | 530 | 100 | Minus |
3R | 32079331 | 3R | 19688296..19688365 | 886..817 | 305 | 95.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:06:26 has no hits.
BO04421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:28 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 204..1074 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:22 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 204..1074 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:07 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 580..1450 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:29 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 580..1450 | 15..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:29 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19688296..19688365 | 817..886 | 95 | -> | Minus |
3R | 19696552..19696656 | 712..816 | 100 | -> | Minus |
3R | 19697312..19697446 | 577..711 | 100 | -> | Minus |
3R | 19697526..19697966 | 136..576 | 100 | -> | Minus |
3R | 19698064..19698183 | 15..135 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:07 Download gff for
BO04421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15514018..15514087 | 817..886 | 95 | -> | Minus |
arm_3R | 15522274..15522378 | 712..816 | 100 | -> | Minus |
arm_3R | 15523034..15523168 | 577..711 | 100 | -> | Minus |
arm_3R | 15523248..15523688 | 136..576 | 100 | -> | Minus |
arm_3R | 15523786..15523905 | 15..135 | 98 | | Minus |
BO04421.5prime Sequence
862 bp (773 high quality bases) assembled on 2005-12-01
> BO04421.5prime
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATAC
BO04421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31216-PA | 1074 | CG31216-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 158..1003 | 17..862 | 4230 | 100 | Plus |
Naam-RA | 1817 | CG31216-RA | 377..1222 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697858 | 529..862 | 1670 | 100 | Plus |
3R | 32079331 | 3R | 19688176..19688365 | 100..289 | 950 | 100 | Plus |
3R | 32079331 | 3R | 19697310..19697446 | 393..529 | 685 | 100 | Plus |
3R | 32079331 | 3R | 19696551..19696656 | 289..394 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19687212..19687297 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:44:29 has no hits.
BO04421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:30 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:24 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:45 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 369..1222 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:44 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 369..1222 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:44 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19687204..19687297 | 8..102 | 95 | -> | Plus |
3R | 19688179..19688365 | 103..289 | 100 | -> | Plus |
3R | 19696552..19696656 | 290..394 | 100 | -> | Plus |
3R | 19697312..19697446 | 395..529 | 100 | -> | Plus |
3R | 19697526..19697858 | 530..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:45 Download gff for
BO04421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15512926..15513019 | 8..102 | 95 | -> | Plus |
arm_3R | 15513901..15514087 | 103..289 | 100 | -> | Plus |
arm_3R | 15522274..15522378 | 290..394 | 100 | -> | Plus |
arm_3R | 15523034..15523168 | 395..529 | 100 | -> | Plus |
arm_3R | 15523248..15523580 | 530..862 | 100 | | Plus |
BO04421.complete Sequence
1105 bp (1105 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629752
> BO04421.complete
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATACAGGACCATCCTCATCGACGACTGCTGCCGGGGTACAGA
TGTCCACGACATCGAGCACACCAAGGAGAAGGTCAACACCAGCGATGGCG
TTATAGTCCACACTAATCAGGTCAAGGCAATGGCCGAGGGTCGGGATCGT
CGTCCTGAACTGGGCTACAAACTGGCCATGGAGCTGAAGAGCCCCGATTC
GGTTCTTTCGCAACGCAATGGCTTCAGGCCCTCATACGCAAGCTTTCTAG
ACCAT
BO04421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1074 | CG31216-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Naam-RA | 1074 | CG31216-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 158..1228 | 17..1087 | 5355 | 100 | Plus |
Naam-RA | 1817 | CG31216-RA | 377..1447 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697968 | 529..972 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 19688176..19688365 | 100..289 | 950 | 100 | Plus |
3R | 32079331 | 3R | 19697310..19697446 | 393..529 | 685 | 100 | Plus |
3R | 32079331 | 3R | 19698062..19698180 | 969..1087 | 595 | 100 | Plus |
3R | 32079331 | 3R | 19696551..19696656 | 289..394 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19687212..19687297 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:11 has no hits.
BO04421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:56 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 1..1074 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:52 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 366..1436 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:15 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 377..1447 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:56 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 358..1439 | 8..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:03 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 377..1447 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:03 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19687212..19687297 | 17..102 | 100 | -> | Plus |
3R | 19688179..19688365 | 103..289 | 100 | -> | Plus |
3R | 19696552..19696656 | 290..394 | 100 | -> | Plus |
3R | 19697312..19697446 | 395..529 | 100 | -> | Plus |
3R | 19697526..19697966 | 530..970 | 100 | -> | Plus |
3R | 19698064..19698180 | 971..1089 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:15 Download gff for
BO04421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15523786..15523902 | 971..1089 | 98 | | Plus |
arm_3R | 15513901..15514087 | 103..289 | 100 | -> | Plus |
arm_3R | 15522274..15522378 | 290..394 | 100 | -> | Plus |
arm_3R | 15523034..15523168 | 395..529 | 100 | -> | Plus |
arm_3R | 15512934..15513019 | 17..102 | 100 | -> | Plus |
arm_3R | 15523248..15523688 | 530..970 | 100 | -> | Plus |
BO04421.pep Sequence
Translation from 16 to 1105
> BO04421.pep
MDSPTPPIVIEDSNGSAMDACFTAFDKDSDDRLSLAEFSIICRALFRNDK
GHIYDVPPERLEQIFAVFDTNGDGFIDREEFKFCWNQWIKTIVRPVNAFL
IVDVQNDFISGSLDISNCSAQQQGHEILEPINKLLDTVDFDAVFYSLDWH
PSDHVSFIDNVKMRPMDESSALDSDSAKVFDTVIFAGPPPMKQRLWPRHC
VQDSWGAELHKDLKVVDHGIKVYKGTNPEVDSYSVFWDNKKLSDTTLNAQ
LKMKGATDIYVCGLAYDVCVGATAVDALSAGYRTILIDDCCRGTDVHDIE
HTKEKVNTSDGVIVHTNQVKAMAEGRDRRPELGYKLAMELKSPDSVLSQR
NGFRPSYASFLDH
BO04421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-PB | 357 | CG31216-PB | 1..357 | 1..357 | 1907 | 100 | Plus |
Naam-PA | 357 | CG31216-PA | 1..357 | 1..357 | 1907 | 100 | Plus |