Clone BO04421 Report

Search the DGRC for BO04421

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptNaam-RA
Protein status:BO04421.pep: validated full length
Sequenced Size:1105

Clone Sequence Records

BO04421.3prime Sequence

886 bp (782 high quality bases) assembled on 2005-12-01

> BO04421.3prime
ATGGTCTAGAAAGCTTGCGTATGAGGGCCTGAAGCCATTGCGTTGCGAAA
GAACCGAATCGGGGCTCTTCAGCTCCATGGCCAGTTTGTAGCCCAGTTCA
GGACGACGATCCCGACCCTCGGCCATTGCCTTGACCTGATTAGTGTGGAC
TATAACGCCATCGCTGGTGTTGACCTTCTCCTTGGTGTGCTCGATGTCGT
GGACATCTGTACCCCGGCAGCAGTCGTCGATGAGGATGGTCCTGTATCCG
GCGGACAAAGCATCCACGGCTGTGGCTCCAACGCAGACGTCATAGGCCAA
TCCGCACACATAGATATCCGTGGCGCCCTTCATTTTCAGCTGGGCATTTA
GAGTGGTGTCAGATAGCTTCTTGTTGTCCCAGAACACCGAATAAGAGTCC
ACCTCGGGATTAGTGCCCTTGTACACCTTGATGCCGTGGTCGACCACTTT
GAGGTCCTTGTGCAGCTCGGCTCCCCACGAGTCCTGGACGCAGTGACGTG
GCCACAGGCGCTGCTTCATCGGCGGCGGTCCTGCGAAAATGACCGTGTCA
AACACCTTGGCGGAATCCGAGTCCAACGCGGAGGACTCGTCCATGGGGCG
CATTTTGACATTATCAATAAATGAAACGTGATCGCTGGGATGCCAGTCCA
ATGAGTAGAAGACGGCATCAAAGTCCACCGTATCCAGCAGCTTGTTGATG
GGCTCCAGTATCTCGTGTCCTTGCTGCTGTGCACTGCAATTACTTATATC
CAAGGAACCACTTATAAAATCATTTTGTACATCAACAATGAGGAACGCGT
TCACCGGTCGCACAATCGTTTTTATCCACTGGGTTCAACAGAATTTAAAC
TCCTCCCGGTCGATGAGGCCATCGCCATTCGTATCG

BO04421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31216-PA 1074 CG31216-RA 204..1071 886..19 4265 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 361..1228 886..19 4295 99.7 Minus
Naam-RA 1817 CG31216-RA 580..1447 886..19 4295 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697968 577..134 2220 100 Minus
3R 32079331 3R 19697310..19697446 713..577 685 100 Minus
3R 32079331 3R 19698062..19698180 137..19 595 100 Minus
3R 32079331 3R 19696551..19696656 817..712 530 100 Minus
3R 32079331 3R 19688296..19688365 886..817 305 95.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:06:26 has no hits.

BO04421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:28 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 204..1074 15..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:22 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 204..1074 15..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:07 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 580..1450 15..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:29 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 580..1450 15..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:29 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19688296..19688365 817..886 95 -> Minus
3R 19696552..19696656 712..816 100 -> Minus
3R 19697312..19697446 577..711 100 -> Minus
3R 19697526..19697966 136..576 100 -> Minus
3R 19698064..19698183 15..135 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:07 Download gff for BO04421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15514018..15514087 817..886 95 -> Minus
arm_3R 15522274..15522378 712..816 100 -> Minus
arm_3R 15523034..15523168 577..711 100 -> Minus
arm_3R 15523248..15523688 136..576 100 -> Minus
arm_3R 15523786..15523905 15..135 98   Minus

BO04421.5prime Sequence

862 bp (773 high quality bases) assembled on 2005-12-01

> BO04421.5prime
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATAC

BO04421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31216-PA 1074 CG31216-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 158..1003 17..862 4230 100 Plus
Naam-RA 1817 CG31216-RA 377..1222 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697858 529..862 1670 100 Plus
3R 32079331 3R 19688176..19688365 100..289 950 100 Plus
3R 32079331 3R 19697310..19697446 393..529 685 100 Plus
3R 32079331 3R 19696551..19696656 289..394 530 100 Plus
3R 32079331 3R 19687212..19687297 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:44:29 has no hits.

BO04421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:30 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:24 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:45 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 369..1222 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:44 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 369..1222 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:44 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19687204..19687297 8..102 95 -> Plus
3R 19688179..19688365 103..289 100 -> Plus
3R 19696552..19696656 290..394 100 -> Plus
3R 19697312..19697446 395..529 100 -> Plus
3R 19697526..19697858 530..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:45 Download gff for BO04421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15512926..15513019 8..102 95 -> Plus
arm_3R 15513901..15514087 103..289 100 -> Plus
arm_3R 15522274..15522378 290..394 100 -> Plus
arm_3R 15523034..15523168 395..529 100 -> Plus
arm_3R 15523248..15523580 530..862 100   Plus

BO04421.complete Sequence

1105 bp (1105 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629752

> BO04421.complete
GAAGTTATCAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAG
ATTCAAACGGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGAC
AGTGATGACCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCT
GTTCCGCAACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTG
AGCAGATATTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGG
GAGGAGTTTAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACC
GGTGAACGCGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTT
CCTTGGATATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTG
GAGCCCATCAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTA
CTCATTGGACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCA
AAATGCGCCCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAG
GTGTTTGACACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCT
GTGGCCACGTCACTGCGTCCAGGACTCGTGGGGAGCCGAGCTGCACAAGG
ACCTCAAAGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCC
GAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACAC
CACTCTAAATGCCCAGCTGAAAATGAAGGGCGCCACGGATATCTATGTGT
GCGGATTGGCCTATGACGTCTGCGTTGGAGCCACAGCCGTGGATGCTTTG
TCCGCCGGATACAGGACCATCCTCATCGACGACTGCTGCCGGGGTACAGA
TGTCCACGACATCGAGCACACCAAGGAGAAGGTCAACACCAGCGATGGCG
TTATAGTCCACACTAATCAGGTCAAGGCAATGGCCGAGGGTCGGGATCGT
CGTCCTGAACTGGGCTACAAACTGGCCATGGAGCTGAAGAGCCCCGATTC
GGTTCTTTCGCAACGCAATGGCTTCAGGCCCTCATACGCAAGCTTTCTAG
ACCAT

BO04421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1074 CG31216-PB 1..1071 17..1087 5355 100 Plus
Naam-RA 1074 CG31216-PA 1..1071 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 158..1228 17..1087 5355 100 Plus
Naam-RA 1817 CG31216-RA 377..1447 17..1087 5355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697968 529..972 2220 100 Plus
3R 32079331 3R 19688176..19688365 100..289 950 100 Plus
3R 32079331 3R 19697310..19697446 393..529 685 100 Plus
3R 32079331 3R 19698062..19698180 969..1087 595 100 Plus
3R 32079331 3R 19696551..19696656 289..394 530 100 Plus
3R 32079331 3R 19687212..19687297 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:11 has no hits.

BO04421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:56 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 1..1074 17..1091 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:52 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 366..1436 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:15 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 377..1447 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:56 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 358..1439 8..1091 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:03 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 377..1447 17..1089 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:03 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19687212..19687297 17..102 100 -> Plus
3R 19688179..19688365 103..289 100 -> Plus
3R 19696552..19696656 290..394 100 -> Plus
3R 19697312..19697446 395..529 100 -> Plus
3R 19697526..19697966 530..970 100 -> Plus
3R 19698064..19698180 971..1089 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:15 Download gff for BO04421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15523786..15523902 971..1089 98   Plus
arm_3R 15513901..15514087 103..289 100 -> Plus
arm_3R 15522274..15522378 290..394 100 -> Plus
arm_3R 15523034..15523168 395..529 100 -> Plus
arm_3R 15512934..15513019 17..102 100 -> Plus
arm_3R 15523248..15523688 530..970 100 -> Plus

BO04421.pep Sequence

Translation from 16 to 1105

> BO04421.pep
MDSPTPPIVIEDSNGSAMDACFTAFDKDSDDRLSLAEFSIICRALFRNDK
GHIYDVPPERLEQIFAVFDTNGDGFIDREEFKFCWNQWIKTIVRPVNAFL
IVDVQNDFISGSLDISNCSAQQQGHEILEPINKLLDTVDFDAVFYSLDWH
PSDHVSFIDNVKMRPMDESSALDSDSAKVFDTVIFAGPPPMKQRLWPRHC
VQDSWGAELHKDLKVVDHGIKVYKGTNPEVDSYSVFWDNKKLSDTTLNAQ
LKMKGATDIYVCGLAYDVCVGATAVDALSAGYRTILIDDCCRGTDVHDIE
HTKEKVNTSDGVIVHTNQVKAMAEGRDRRPELGYKLAMELKSPDSVLSQR
NGFRPSYASFLDH

BO04421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-PB 357 CG31216-PB 1..357 1..357 1907 100 Plus
Naam-PA 357 CG31216-PA 1..357 1..357 1907 100 Plus