Clone Sequence Records
BO04422.3prime Sequence
953 bp (822 high quality bases) assembled on 2005-12-01
> BO04422.3prime
ATGGTCTAGAAAGCTTGCGATAATCTTCACTTTGACTTTGTGATACGCGT
TGGCCAAGACGCCACGCAGATTCCAGATGTGCTCGAATTTCTCCGGCTGC
ACATTGTACGCCGAGTCAACGGCCTTGGCCCAAATCTCCACGTCGCCGGC
TCTCCTTTGGGCCTCGGAAACGGGCAGACGTGCGGTCCACAGGGACCAGC
CGTAGTGTCTGCCATCGGGCATCTCCTCCTGCTCCAGTTCGGCCACGTGC
CAGCTAACACCCTCATCGTTGGTTAGGTCCACCCTTACGATTTTCCTGCC
GCCGCCGCTCCACGCGTATCCCCTAACCGTGATGTGACCCTCGTCGTCGT
CCACTTTCACCCTGGCCCCTGGCTGTGGCGTACAGATGGCCGATGTCACC
GGCATGGCCTGGATGGCATCCGATTTGCTGAAGTCTACCGTGTCCCAATC
GGTGCTAGGGCTAAAGCCCTTATAGTCGTTCTGCTGCCAGTGCGAGTCCG
ATTCCTTGTCCGCCACCACGATTCGCGTTAGCCACTTCACGTTGCGAGCG
CCCACTGTGCCGGGAACAATTACGCGGATGGGGAAGCCATGGTCTCTGCT
CAGCGGCTCATCGTTCATCTCGTAGGCCAGGATGACATCTCCCCTGGGAT
CGAGCGCCTTGGCGAGTGGTATCGATGCTCCATACGGGTGGGAAGTGGGA
TCCAGGTCGGCACCCTCGAAGATCACGTGCTTGGTCTCATCCGGCTGCAC
GCCCTGCTCTCTTAGAATGTCGCACAGTCGAGCTCCTGACCACTTGGCAT
TGCCCACTGCACCAGCTCCCCATGAAAGACCCTTTACGGCCTTGACTTTG
GTCATCTCAGAGCGTCGATTGCCACCGCACATGATGGCCGCCGTGACCGA
GTGCTTGGGCAGGGCCTTGATCCCGTCCAGAGTGAGGGTCTTGTCCTTGG
CGC
BO04422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 1722 | CG7280-RA | 785..1719 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 1063..1997 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18846507..18847319 | 19..831 | 4065 | 100 | Plus |
| X | 23542271 | X | 18847380..18847504 | 829..953 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:20:37 has no hits.
BO04422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:30 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 785..1722 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:25 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 785..1722 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:18 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1063..2002 | 14..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:38 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1063..2002 | 14..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:38 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18846502..18847318 | 14..830 | 99 | <- | Plus |
| X | 18847382..18847504 | 831..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:18 Download gff for
BO04422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18740535..18741351 | 14..830 | 99 | <- | Plus |
| arm_X | 18741415..18741537 | 831..953 | 100 | | Plus |
BO04422.5prime Sequence
897 bp (786 high quality bases) assembled on 2005-12-01
> BO04422.5prime
GAAGTTATCAGTCGACATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGC
TGCGCGGAAGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTG
ACCACCAGTCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCA
ATGGAGTTCTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTT
GGGCAGGTGGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAAC
CATGTGCTGCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGC
AACGGCCCGACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACA
GGGCAGAAGAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTC
ACCTACGGCCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCC
CGGTGGCGATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTT
GGGGCATCTACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAG
GGCTTTCGCATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGA
TGAGCTGGGCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCA
AGCCAGCCTCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTG
GCCGAGCAGTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCT
GCCAGTGCCAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTG
GCGCCAAGGACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAG
CACTCGGTCACGGCGGCCATCATGTGCGGGTGGCAATCGACGCTCTG
BO04422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 1722 | CG7280-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 279..1158 | 17..897 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18847409..18848288 | 897..17 | 4355 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:05:30 has no hits.
BO04422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:31 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 1..880 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:26 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-PA | 1..880 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:31 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1158 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:13 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 272..1158 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:13 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18847409..18848295 | 9..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:31 Download gff for
BO04422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18741442..18742328 | 9..897 | 99 | | Minus |
BO04422.complete Sequence
1753 bp (1753 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ629753
> BO04422.complete
GAAGTTATCAGTCGACATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGC
TGCGCGGAAGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTG
ACCACCAGTCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCA
ATGGAGTTCTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTT
GGGCAGGTGGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAAC
CATGTGCTGCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGC
AACGGCCCGACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACA
GGGCAGAAGAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTC
ACCTACGGCCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCC
CGGTGGCGATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTT
GGGGCATCTACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAG
GGCTTTCGCATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGA
TGAGCTGGGCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCA
AGCCAGCCTCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTG
GCCGAGCAGTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCT
GCCAGTGCCAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTG
GCGCCAAGGACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAG
CACTCGGTCACGGCGGCCATCATGTGCGGTGGCAATCGACGCTCTGAGAT
GACCAAAGTCAAGGCCGTAAAGGGTCTTTCATGGGGAGCTGGTGCAGTGG
GCAATGCCAAGTGGTCAGGAGCTCGACTGTGCGACATTCTAAGAGAGCAG
GGCGTGCAGCCGGATGAGACCAAGCACGTGATCTTCGAGGGTGCCGACCT
GGATCCCACTTCCCACCCGTATGGAGCATCGATACCACTCGCCAAGGCGC
TCGATCCCAGGGGAGATGTCATCCTGGCCTACGAGATGAACGATGAGCCG
CTGAGCAGAGACCATGGCTTCCCCATCCGCGTAATTGTTCCCGGCACAGT
GGGCGCTCGCAACGTGAAGTGGCTAACGCGAATCGTGGTGGCGGACAAGG
AATCGGACTCGCACTGGCAGCAGAACGACTATAAGGGCTTTAGCCCTAGC
ACCGATTGGGACACGGTAGACTTCAGCAAATCGGATGCCATCCAGGCCAT
GCCGGTGACATCGGCCATCTGTACGCCACAGCCAGGGGCCAGGGTGAAAG
TGGACGACGACGAGGGTCACATCACGGTTAGGGGATACGCGTGGAGCGGC
GGCGGCAGGAAAATCGTAAGGGTGGACCTAACCAACGATGAGGGTGTTAG
CTGGCACGTGGCCGAACTGGAGCAGGAGGAGATGCCCGATGGCAGACACT
ACGGCTGGTCCCTGTGGACCGCACGTCTGCCCGTTTCCGAGGCCCAAAGG
AGAGCCGGCGACGTGGAGATTTGGGCCAAGGCCGTTGACTCGGCGTACAA
TGTGCAGCCGGAGAAATTCGAGCACATCTGGAATCTGCGTGGCGTCTTGG
CCAACGCGTATCACAAAGTCAAAGTGAAGATTATCGCAAGCTTTCTAGAC
CAT
BO04422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 1722 | CG7280-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-RA | 2115 | CG7280-RA | 279..1997 | 17..1735 | 8595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18847380..18848288 | 925..17 | 4545 | 100 | Minus |
| X | 23542271 | X | 18846507..18847319 | 1735..923 | 4065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:55 has no hits.
BO04422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:34 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 1..1722 | 17..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:58 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 257..1987 | 9..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:02 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 279..1997 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:34 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 257..1987 | 9..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:30 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7280-RA | 279..1997 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:30 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18846504..18847318 | 924..1737 | 99 | <- | Minus |
| X | 18847382..18848288 | 17..923 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:02 Download gff for
BO04422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18740537..18741351 | 924..1737 | 99 | <- | Minus |
| arm_X | 18741415..18742321 | 17..923 | 100 | | Minus |
BO04422.pep Sequence
Translation from 16 to 1753
> BO04422.pep
MRLLRPSWAGLLRGRHHQHQRHHRRLLLTTSRGSNGEREEQQHSQWSSPG
SRSEQLFYAAFWAGGLTLGYHWLTDKKNHVLLEGQKVASEEELEATARLW
HVTNRRELPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKI
LMAAGSAIDPFWGIYQQHNTLEVLELLEGFRIGNLEGLVVTNVDDELGSP
WSQEPQRHALLKPASKRPFNAEPPIGLLAEQFYTPNELFYVRNHLPVPVI
NPEDYELEIEGGAKDKTLTLDGIKALPKHSVTAAIMCGGNRRSEMTKVKA
VKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADLDPTSH
PYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNV
KWLTRIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSA
ICTPQPGARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAE
LEQEEMPDGRHYGWSLWTARLPVSEAQRRAGDVEIWAKAVDSAYNVQPEK
FEHIWNLRGVLANAYHKVKVKIIASFLDH
BO04422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7280-PA | 573 | CG7280-PA | 1..573 | 1..573 | 3075 | 100 | Plus |
