Clone BO04425 Report

Search the DGRC for BO04425

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG6805-RA
Protein status:BO04425.pep: validated full length
Sequenced Size:1105

Clone Sequence Records

BO04425.3prime Sequence

944 bp (799 high quality bases) assembled on 2005-12-01

> BO04425.3prime
ATGGTCTAGAAAGCTTGCAAGTTGAGTATAGGACACAGCTACAAAAACAA
CAAATGCGAAGGATAGACTAACATTTGGCGTCGCCGGAGATGAGGCAGAT
CCGTGCGTCATTTCGTGGAGCTCCTCGTCGGTGTAGGTCTGGTTGGCAGC
CTCGACCTTGTAGTTGAATGTCGCCGATACGGGCTTGTGGTCGGAGAGAG
TGTAGTCCATGTGGGACTGATAAGACAGCTGGTTGGCACTCAGGGTAATG
CCCGGATAAATGTTGCTCTGCACGCGATGCAAAATCCGATCGCACCAGGC
GGGTCGCCGCTTCAAGTTGTAGTCATTAGTGCCTTCCACGAACTTAAAAG
TGGGCGCAAAGTTGGGCTGCTGCTCCTCCAGCAAGCTGAAGGCGTTTCCC
TTCTCCCGGAGCAGATTCAACTGGTCGAGCTTGAGCAGATCAGCGTATCG
CTGGTTCTCCACATCCGTGCGGACATCCCAAGCGGACATATCGCCGGAGA
GACGGAAGTTAAGATCGCCAAACCAAAAGACAAAGTCGTGATCGAATATC
CGGCGATATCCCTGCGCATTGTACTTGTGATTGTCCACGATTTGGTGATA
GTCTTCGATGCGCTCCTTCAGCTTCTCATCGTGCGCCGCCAGATGGGAGC
AGACGAATGCGACGCCAGTTCCGTAGAGCGAAAGTCGAATGCTTACGGCA
CCCTTGTTGCCCCACAGCCCTCCAAGTCCCGTGCGCGTGGCTTCTGTCTC
GATTTCTTTCATGTGCGGGATGTGCTTGTGCTGTGCGAACATGGTTATAA
GAATTCCCTGCAGCTGCTTCGAGTCCACCTTTACGAACTGGTGATCGCTC
AGAGAGTCCGCGATCTTCAGCACCCACGGATCGTCATTGAAGATTTTTAG
CACCTGGCGGTGTGGTGCTCACCCTCCTGAAATCCGATTACATA

BO04425.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 1074 CG6805-RA 184..1071 906..19 4440 100 Minus
CG9784-PA 1527 CG9784-RA 630..671 544..503 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1770 CG6805-RA 458..1381 944..19 4565 99.7 Minus
CG6805-RB 1696 CG6805-RB 458..1327 944..73 4295 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005908..17006507 944..343 2895 99.5 Minus
2R 25286936 2R 17006787..17007112 344..19 1630 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:21:01 has no hits.

BO04425.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:37 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 149..1074 16..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:34 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 149..1074 16..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:21 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 459..1381 19..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:44 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 459..1381 19..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:44 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17005909..17006507 343..943 99 -> Minus
2R 17006789..17007112 19..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:21 Download gff for BO04425.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12893414..12894012 343..943 99 -> Minus
arm_2R 12894294..12894617 19..342 100   Minus

BO04425.5prime Sequence

892 bp (785 high quality bases) assembled on 2005-11-29

> BO04425.5prime
GAAGTTATCAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCA
TCTTCCTTTTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGAT
CTGAGCTCCCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCA
GCTGCCCGATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGC
AGGTGCTAAAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGAC
TCTCTGAGCGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGG
AATTCTTATAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAG
AAATCGAGACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAAC
AAGGGTGCCGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATT
CGTCTGCTCCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCG
AAGACTATCACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATAT
CGCCGGATATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTT
CCGTCTCTCCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGA
ACCAGCGATACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGG
GAGAAGGGAAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGC
GCCCACTTTTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGC
GACCCGCCTGGGGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTAT
CGGGGCATTACCCTGAGTGCCAACCAGCTGTCTTATCAGTCC

BO04425.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 1074 CG6805-RA 1..876 17..892 4330 99.7 Plus
CG9784-PA 1527 CG9784-RA 630..671 562..603 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RB 1696 CG6805-RB 311..1186 17..892 4350 99.8 Plus
CG6805-RA 1770 CG6805-RA 311..1186 17..892 4350 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005761..17006507 17..763 3735 100 Plus
2R 25286936 2R 17006787..17006917 762..892 625 98.5 Plus
Blast to na_te.dros performed on 2015-02-13 05:34:19 has no hits.

BO04425.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:38 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:35 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:57 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1186 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:35 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1186 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:35 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17005761..17006507 17..763 100 -> Plus
2R 17006789..17006917 764..892 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:57 Download gff for BO04425.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12893266..12894012 17..763 100 -> Plus
arm_2R 12894294..12894422 764..892 98   Plus

BO04425.complete Sequence

1105 bp (1105 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629754

> BO04425.complete
GAAGTTATCAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCA
TCTTCCTTTTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGAT
CTGAGCTCCCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCA
GCTGCCCGATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGC
AGGTGCTAAAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGAC
TCTCTGAGCGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGG
AATTCTTATAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAG
AAATCGAGACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAAC
AAGGGTGCCGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATT
CGTCTGCTCCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCG
AAGACTATCACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATAT
CGCCGGATATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTT
CCGTCTCTCCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGA
ACCAGCGATACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGG
GAGAAGGGAAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGC
GCCCACTTTTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGC
GACCCGCCTGGTGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTAT
CCGGGCATTACCCTGAGTGCCAACCAGCTGTCTTATCAGTCCCACATGGA
CTACACTCTCTCCGACCACAAGCCCGTATCGGCGACATTCAACTACAAGG
TCGAGGCTGCCAACCAGACCTACACCGACGAGGAGCTCCACGAAATGACG
CACGGATCTGCCTCATCTCCGGCGACGCCAAATGTTAGTCTATCCTTCGC
ATTTGTTGTTTTTGTAGCTGTGTCCTATACTCAACTTGCAAGCTTTCTAG
ACCAT

BO04425.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1074 CG6805-PA 1..1071 17..1087 5355 100 Plus
CG6805-RB 1047 CG6805-PB 1..1017 17..1033 5085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1770 CG6805-RA 311..1381 17..1087 5355 100 Plus
CG6805-RB 1696 CG6805-RB 311..1327 17..1033 5085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005761..17006507 17..763 3735 100 Plus
2R 25286936 2R 17006787..17007112 762..1087 1630 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:56:51 has no hits.

BO04425.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:04 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 17..1090 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:37 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 309..1379 17..1087 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:49 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1381 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:04 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 309..1379 17..1087 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:19 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1381 17..1089 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:19 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17005761..17006507 17..763 100 -> Plus
2R 17006789..17007112 764..1089 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:49 Download gff for BO04425.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12894294..12894617 764..1089 99   Plus
arm_2R 12893266..12894012 17..763 100 -> Plus

BO04425.pep Sequence

Translation from 16 to 1105

> BO04425.pep
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQLASFLDH

BO04425.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 357 CG6805-PA 1..357 1..357 1889 100 Plus
CG6805-PB 348 CG6805-PB 1..343 1..343 1808 98.8 Plus
CG9784-PB 508 CG9784-PB 33..343 12..312 828 51.1 Plus
CG9784-PA 508 CG9784-PA 33..343 12..312 828 51.1 Plus
CG9784-PC 519 CG9784-PC 33..343 12..312 828 51.1 Plus