Clone Sequence Records
BO04425.3prime Sequence
944 bp (799 high quality bases) assembled on 2005-12-01
> BO04425.3prime
ATGGTCTAGAAAGCTTGCAAGTTGAGTATAGGACACAGCTACAAAAACAA
CAAATGCGAAGGATAGACTAACATTTGGCGTCGCCGGAGATGAGGCAGAT
CCGTGCGTCATTTCGTGGAGCTCCTCGTCGGTGTAGGTCTGGTTGGCAGC
CTCGACCTTGTAGTTGAATGTCGCCGATACGGGCTTGTGGTCGGAGAGAG
TGTAGTCCATGTGGGACTGATAAGACAGCTGGTTGGCACTCAGGGTAATG
CCCGGATAAATGTTGCTCTGCACGCGATGCAAAATCCGATCGCACCAGGC
GGGTCGCCGCTTCAAGTTGTAGTCATTAGTGCCTTCCACGAACTTAAAAG
TGGGCGCAAAGTTGGGCTGCTGCTCCTCCAGCAAGCTGAAGGCGTTTCCC
TTCTCCCGGAGCAGATTCAACTGGTCGAGCTTGAGCAGATCAGCGTATCG
CTGGTTCTCCACATCCGTGCGGACATCCCAAGCGGACATATCGCCGGAGA
GACGGAAGTTAAGATCGCCAAACCAAAAGACAAAGTCGTGATCGAATATC
CGGCGATATCCCTGCGCATTGTACTTGTGATTGTCCACGATTTGGTGATA
GTCTTCGATGCGCTCCTTCAGCTTCTCATCGTGCGCCGCCAGATGGGAGC
AGACGAATGCGACGCCAGTTCCGTAGAGCGAAAGTCGAATGCTTACGGCA
CCCTTGTTGCCCCACAGCCCTCCAAGTCCCGTGCGCGTGGCTTCTGTCTC
GATTTCTTTCATGTGCGGGATGTGCTTGTGCTGTGCGAACATGGTTATAA
GAATTCCCTGCAGCTGCTTCGAGTCCACCTTTACGAACTGGTGATCGCTC
AGAGAGTCCGCGATCTTCAGCACCCACGGATCGTCATTGAAGATTTTTAG
CACCTGGCGGTGTGGTGCTCACCCTCCTGAAATCCGATTACATA
BO04425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 1074 | CG6805-RA | 184..1071 | 906..19 | 4440 | 100 | Minus |
CG9784-PA | 1527 | CG9784-RA | 630..671 | 544..503 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RA | 1770 | CG6805-RA | 458..1381 | 944..19 | 4565 | 99.7 | Minus |
CG6805-RB | 1696 | CG6805-RB | 458..1327 | 944..73 | 4295 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005908..17006507 | 944..343 | 2895 | 99.5 | Minus |
2R | 25286936 | 2R | 17006787..17007112 | 344..19 | 1630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:21:01 has no hits.
BO04425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:37 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 149..1074 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:34 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 149..1074 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:21 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 459..1381 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:44 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 459..1381 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:44 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005909..17006507 | 343..943 | 99 | -> | Minus |
2R | 17006789..17007112 | 19..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:21 Download gff for
BO04425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12893414..12894012 | 343..943 | 99 | -> | Minus |
arm_2R | 12894294..12894617 | 19..342 | 100 | | Minus |
BO04425.5prime Sequence
892 bp (785 high quality bases) assembled on 2005-11-29
> BO04425.5prime
GAAGTTATCAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCA
TCTTCCTTTTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGAT
CTGAGCTCCCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCA
GCTGCCCGATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGC
AGGTGCTAAAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGAC
TCTCTGAGCGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGG
AATTCTTATAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAG
AAATCGAGACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAAC
AAGGGTGCCGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATT
CGTCTGCTCCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCG
AAGACTATCACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATAT
CGCCGGATATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTT
CCGTCTCTCCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGA
ACCAGCGATACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGG
GAGAAGGGAAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGC
GCCCACTTTTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGC
GACCCGCCTGGGGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTAT
CGGGGCATTACCCTGAGTGCCAACCAGCTGTCTTATCAGTCC
BO04425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 1074 | CG6805-RA | 1..876 | 17..892 | 4330 | 99.7 | Plus |
CG9784-PA | 1527 | CG9784-RA | 630..671 | 562..603 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RB | 1696 | CG6805-RB | 311..1186 | 17..892 | 4350 | 99.8 | Plus |
CG6805-RA | 1770 | CG6805-RA | 311..1186 | 17..892 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005761..17006507 | 17..763 | 3735 | 100 | Plus |
2R | 25286936 | 2R | 17006787..17006917 | 762..892 | 625 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:34:19 has no hits.
BO04425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:38 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:35 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:53:57 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1186 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:47:35 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1186 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:47:35 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005761..17006507 | 17..763 | 100 | -> | Plus |
2R | 17006789..17006917 | 764..892 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:53:57 Download gff for
BO04425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12893266..12894012 | 17..763 | 100 | -> | Plus |
arm_2R | 12894294..12894422 | 764..892 | 98 | | Plus |
BO04425.complete Sequence
1105 bp (1105 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629754
> BO04425.complete
GAAGTTATCAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCA
TCTTCCTTTTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGAT
CTGAGCTCCCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCA
GCTGCCCGATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGC
AGGTGCTAAAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGAC
TCTCTGAGCGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGG
AATTCTTATAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAG
AAATCGAGACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAAC
AAGGGTGCCGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATT
CGTCTGCTCCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCG
AAGACTATCACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATAT
CGCCGGATATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTT
CCGTCTCTCCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGA
ACCAGCGATACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGG
GAGAAGGGAAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGC
GCCCACTTTTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGC
GACCCGCCTGGTGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTAT
CCGGGCATTACCCTGAGTGCCAACCAGCTGTCTTATCAGTCCCACATGGA
CTACACTCTCTCCGACCACAAGCCCGTATCGGCGACATTCAACTACAAGG
TCGAGGCTGCCAACCAGACCTACACCGACGAGGAGCTCCACGAAATGACG
CACGGATCTGCCTCATCTCCGGCGACGCCAAATGTTAGTCTATCCTTCGC
ATTTGTTGTTTTTGTAGCTGTGTCCTATACTCAACTTGCAAGCTTTCTAG
ACCAT
BO04425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RA | 1074 | CG6805-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
CG6805-RB | 1047 | CG6805-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RA | 1770 | CG6805-RA | 311..1381 | 17..1087 | 5355 | 100 | Plus |
CG6805-RB | 1696 | CG6805-RB | 311..1327 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005761..17006507 | 17..763 | 3735 | 100 | Plus |
2R | 25286936 | 2R | 17006787..17007112 | 762..1087 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:56:51 has no hits.
BO04425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:04 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:37 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 309..1379 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:49 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1381 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:04 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 309..1379 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:19 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1381 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:19 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005761..17006507 | 17..763 | 100 | -> | Plus |
2R | 17006789..17007112 | 764..1089 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:49 Download gff for
BO04425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12894294..12894617 | 764..1089 | 99 | | Plus |
arm_2R | 12893266..12894012 | 17..763 | 100 | -> | Plus |
BO04425.pep Sequence
Translation from 16 to 1105
> BO04425.pep
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQLASFLDH
BO04425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 357 | CG6805-PA | 1..357 | 1..357 | 1889 | 100 | Plus |
CG6805-PB | 348 | CG6805-PB | 1..343 | 1..343 | 1808 | 98.8 | Plus |
CG9784-PB | 508 | CG9784-PB | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PA | 508 | CG9784-PA | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PC | 519 | CG9784-PC | 33..343 | 12..312 | 828 | 51.1 | Plus |