Clone BO04427 Report

Search the DGRC for BO04427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13101-RA
Protein status:BO04427.pep: validated full length
Sequenced Size:988

Clone Sequence Records

BO04427.3prime Sequence

896 bp (787 high quality bases) assembled on 2005-12-01

> BO04427.3prime
ATGGTCTAGAAAGCTTGCGCCAGTGGGCAAATAAGCCTGATTCTCATAGC
CAGCGAAATTGCCCAATACCATTGATATGCGAGATGGTGAGTGCTGAATT
CCATTTCCGGATTTATCGTCTAATCCATTAGTTTGACCATTTGATTTCGC
ACTGGTGGGCAGTACGAAATTTGCATTTCGACAGCGTCGATGGAGGAATA
ATCTCAGTTTGAAGAAGGCAAAGAGCAGCACATAAATGCAACAGGACAAC
AAAAGTACGCCAACTACCGTGGTGAAGGCATTTTGAGGTTTGCTCCAGTC
AATCACATAGTAGATATAAGGTTTGCCTTTCTTATTAATGCCACCGCACA
AATGATAGATATAGGAAAAGATGGCAAACACAACTCCGAATAGTACTGGC
AGAAATATATGCAGCAAACGCAGGGGATGAGCTACAATCCACAGATCGAT
GAACATGCAAATCGAGTTGAATGCATGAGTGAGTACATTTGTGGCATCCA
AGGCGCTTTCATTAGCATCATATAGAATACTCCAGTAGATGATGGTGATG
ACGATGGACAAGACCAGAGATATGATGTGCATACCCCAGTACAAGCGAAA
ATAGCTAAAGTAGCTCTTCATATTCAACAGTTTATCCGCATATTCTGGAT
GATAATGCCATATAGTGACTAGAATAGCACCCAAGACGTTGGTCAACATG
CACATCCATATGCCCCAGTTGGTCATGTAGATAAAGTAGAGCCAATAACT
GGTTGCATCATCCGTTTCTGGCCACATTGAGATTATTACAACGACCACAA
AGAACATGGCCATGAACCAGCGATAAAACAAATAGGCCATACTCTTGGTA
CATGATTGCCACTGAGACTTGACAAAATCATCGGGGGTATCATGGT

BO04427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PA 957 CG13101-RA 77..954 896..19 4365 99.8 Minus
CG13101-PB 957 CG13101-RB 77..954 896..19 4365 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 501..1378 896..19 4375 99.9 Minus
CG13101-RA 1396 CG13101-RA 436..1313 896..19 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978045..8978361 19..335 1570 99.7 Plus
2L 23513712 2L 8978858..8979086 636..864 1130 99.6 Plus
2L 23513712 2L 8978420..8978605 331..516 930 100 Plus
2L 23513712 2L 8978663..8978787 512..636 610 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 04:44:41 has no hits.

BO04427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:40 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 77..957 15..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:39 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 77..957 15..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:48 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 436..1321 9..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:23:49 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 436..1321 9..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:23:49 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8978037..8978357 9..331 98 <- Plus
2L 8978421..8978604 332..515 100 <- Plus
2L 8978667..8978786 516..635 100 <- Plus
2L 8978858..8979083 636..861 99 <- Plus
2L 8980048..8980082 862..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:48 Download gff for BO04427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978037..8978357 9..331 98 <- Plus
arm_2L 8978421..8978604 332..515 100 <- Plus
arm_2L 8978667..8978786 516..635 100 <- Plus
arm_2L 8978858..8979083 636..861 99 <- Plus
arm_2L 8980048..8980082 862..896 100   Plus

BO04427.5prime Sequence

854 bp (782 high quality bases) assembled on 2005-11-29

> BO04427.5prime
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAAATTATTCCTCCATC
GACGCTGTCGAAATGCAATTTCGTACTGCCCACCAGTGCGAAATCAAATG
GTCA

BO04427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PA 957 CG13101-RA 1..802 17..818 3985 99.8 Plus
CG13101-PB 957 CG13101-RB 1..802 17..818 3985 99.8 Plus
CG13101-PA 957 CG13101-RA 802..839 817..854 190 100 Plus
CG13101-PB 957 CG13101-RB 802..839 817..854 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 425..1263 17..854 4155 99.8 Plus
CG13101-RA 1396 CG13101-RA 360..1198 17..854 4155 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978858..8979086 353..125 1145 100 Minus
2L 23513712 2L 8978160..8978361 854..654 930 98.5 Minus
2L 23513712 2L 8978420..8978605 658..473 930 100 Minus
2L 23513712 2L 8978663..8978787 477..353 610 99.2 Minus
2L 23513712 2L 8980048..8980158 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:37:34 has no hits.

BO04427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:42 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 1..838 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:40 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-PB 1..838 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:14 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 354..1197 10..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:33 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 354..1197 10..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:33 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8980048..8980164 10..127 97   Minus
2L 8978858..8979083 128..353 100 <- Minus
2L 8978161..8978357 658..853 98 <- Minus
2L 8978421..8978604 474..657 100 <- Minus
2L 8978667..8978786 354..473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:14 Download gff for BO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978161..8978357 658..853 98 <- Minus
arm_2L 8978421..8978604 474..657 100 <- Minus
arm_2L 8978667..8978786 354..473 100 <- Minus
arm_2L 8978858..8979083 128..353 100 <- Minus
arm_2L 8980048..8980164 10..127 97   Minus

BO04427.complete Sequence

988 bp (988 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629755

> BO04427.complete
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAATCAAAT
GGTCAAACTAATGGATTAGACGATAAATCCGGAAATGGAATTCAGCACTC
ACCATCTCGCATATCAATGGTATTGGGCAATTTCGCTGGCTATGAGAATC
AGGCTTATTTGCCCACTGGCGCAAGCTTTCTAGACCAT

BO04427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 957 CG13101-PB 1..954 17..970 4770 100 Plus
CG13101-RA 957 CG13101-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-RB 1589 CG13101-RB 425..1378 17..970 4770 100 Plus
CG13101-RA 1396 CG13101-RA 360..1313 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8978045..8978361 970..654 1570 99.7 Minus
2L 23513712 2L 8978858..8979086 353..125 1145 100 Minus
2L 23513712 2L 8978420..8978605 658..473 930 100 Minus
2L 23513712 2L 8978663..8978787 477..353 610 99.2 Minus
2L 23513712 2L 8980048..8980158 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:12:49 has no hits.

BO04427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:55 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 1..957 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:24 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 417..1384 10..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:02 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 360..1313 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:55 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RB 417..1384 10..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:02 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13101-RA 360..1313 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:02 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8978858..8979083 128..353 100 <- Minus
2L 8980048..8980158 17..127 100   Minus
2L 8978043..8978357 658..972 99 <- Minus
2L 8978421..8978604 474..657 100 <- Minus
2L 8978667..8978786 354..473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:02 Download gff for BO04427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8978858..8979083 128..353 100 <- Minus
arm_2L 8980048..8980158 17..127 100   Minus
arm_2L 8978043..8978357 658..972 99 <- Minus
arm_2L 8978421..8978604 474..657 100 <- Minus
arm_2L 8978667..8978786 354..473 100 <- Minus

BO04427.pep Sequence

Translation from 16 to 988

> BO04427.pep
MSRMSKLQVIVHPVKKEFQRKSCGFDHDTPDDFVKSQWQSCTKSMAYLFY
RWFMAMFFVVVVIISMWPETDDATSYWLYFIYMTNWGIWMCMLTNVLGAI
LVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITIIYWSIL
YDANESALDATNVLTHAFNSICMFIDLWIVAHPLRLLHIFLPVLFGVVFA
IFSYIYHLCGGINKKGKPYIYYVIDWSKPQNAFTTVVGVLLLSCCIYVLL
FAFFKLRLFLHRRCRNANFVLPTSAKSNGQTNGLDDKSGNGIQHSPSRIS
MVLGNFAGYENQAYLPTGASFLDH

BO04427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13101-PB 318 CG13101-PB 1..318 1..318 1726 100 Plus
CG13101-PA 318 CG13101-PA 1..318 1..318 1726 100 Plus
CG9555-PC 275 CG9555-PC 12..267 13..277 488 35.2 Plus
CG9555-PA 275 CG9555-PA 12..267 13..277 488 35.2 Plus
rost-PC 275 CG9552-PC 13..261 16..262 470 34.8 Plus