Clone Sequence Records
BO04427.3prime Sequence
896 bp (787 high quality bases) assembled on 2005-12-01
> BO04427.3prime
ATGGTCTAGAAAGCTTGCGCCAGTGGGCAAATAAGCCTGATTCTCATAGC
CAGCGAAATTGCCCAATACCATTGATATGCGAGATGGTGAGTGCTGAATT
CCATTTCCGGATTTATCGTCTAATCCATTAGTTTGACCATTTGATTTCGC
ACTGGTGGGCAGTACGAAATTTGCATTTCGACAGCGTCGATGGAGGAATA
ATCTCAGTTTGAAGAAGGCAAAGAGCAGCACATAAATGCAACAGGACAAC
AAAAGTACGCCAACTACCGTGGTGAAGGCATTTTGAGGTTTGCTCCAGTC
AATCACATAGTAGATATAAGGTTTGCCTTTCTTATTAATGCCACCGCACA
AATGATAGATATAGGAAAAGATGGCAAACACAACTCCGAATAGTACTGGC
AGAAATATATGCAGCAAACGCAGGGGATGAGCTACAATCCACAGATCGAT
GAACATGCAAATCGAGTTGAATGCATGAGTGAGTACATTTGTGGCATCCA
AGGCGCTTTCATTAGCATCATATAGAATACTCCAGTAGATGATGGTGATG
ACGATGGACAAGACCAGAGATATGATGTGCATACCCCAGTACAAGCGAAA
ATAGCTAAAGTAGCTCTTCATATTCAACAGTTTATCCGCATATTCTGGAT
GATAATGCCATATAGTGACTAGAATAGCACCCAAGACGTTGGTCAACATG
CACATCCATATGCCCCAGTTGGTCATGTAGATAAAGTAGAGCCAATAACT
GGTTGCATCATCCGTTTCTGGCCACATTGAGATTATTACAACGACCACAA
AGAACATGGCCATGAACCAGCGATAAAACAAATAGGCCATACTCTTGGTA
CATGATTGCCACTGAGACTTGACAAAATCATCGGGGGTATCATGGT
BO04427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PA | 957 | CG13101-RA | 77..954 | 896..19 | 4365 | 99.8 | Minus |
CG13101-PB | 957 | CG13101-RB | 77..954 | 896..19 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 501..1378 | 896..19 | 4375 | 99.9 | Minus |
CG13101-RA | 1396 | CG13101-RA | 436..1313 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978045..8978361 | 19..335 | 1570 | 99.7 | Plus |
2L | 23513712 | 2L | 8978858..8979086 | 636..864 | 1130 | 99.6 | Plus |
2L | 23513712 | 2L | 8978420..8978605 | 331..516 | 930 | 100 | Plus |
2L | 23513712 | 2L | 8978663..8978787 | 512..636 | 610 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:44:41 has no hits.
BO04427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:40 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 77..957 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:39 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 77..957 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:48 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 436..1321 | 9..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:23:49 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 436..1321 | 9..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:23:49 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8978037..8978357 | 9..331 | 98 | <- | Plus |
2L | 8978421..8978604 | 332..515 | 100 | <- | Plus |
2L | 8978667..8978786 | 516..635 | 100 | <- | Plus |
2L | 8978858..8979083 | 636..861 | 99 | <- | Plus |
2L | 8980048..8980082 | 862..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:48 Download gff for
BO04427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978037..8978357 | 9..331 | 98 | <- | Plus |
arm_2L | 8978421..8978604 | 332..515 | 100 | <- | Plus |
arm_2L | 8978667..8978786 | 516..635 | 100 | <- | Plus |
arm_2L | 8978858..8979083 | 636..861 | 99 | <- | Plus |
arm_2L | 8980048..8980082 | 862..896 | 100 | | Plus |
BO04427.5prime Sequence
854 bp (782 high quality bases) assembled on 2005-11-29
> BO04427.5prime
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAAATTATTCCTCCATC
GACGCTGTCGAAATGCAATTTCGTACTGCCCACCAGTGCGAAATCAAATG
GTCA
BO04427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PA | 957 | CG13101-RA | 1..802 | 17..818 | 3985 | 99.8 | Plus |
CG13101-PB | 957 | CG13101-RB | 1..802 | 17..818 | 3985 | 99.8 | Plus |
CG13101-PA | 957 | CG13101-RA | 802..839 | 817..854 | 190 | 100 | Plus |
CG13101-PB | 957 | CG13101-RB | 802..839 | 817..854 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 425..1263 | 17..854 | 4155 | 99.8 | Plus |
CG13101-RA | 1396 | CG13101-RA | 360..1198 | 17..854 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978858..8979086 | 353..125 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 8978160..8978361 | 854..654 | 930 | 98.5 | Minus |
2L | 23513712 | 2L | 8978420..8978605 | 658..473 | 930 | 100 | Minus |
2L | 23513712 | 2L | 8978663..8978787 | 477..353 | 610 | 99.2 | Minus |
2L | 23513712 | 2L | 8980048..8980158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:37:34 has no hits.
BO04427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:42 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 1..838 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:40 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-PB | 1..838 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:14 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 354..1197 | 10..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:33 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 354..1197 | 10..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:33 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980048..8980164 | 10..127 | 97 | | Minus |
2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
2L | 8978161..8978357 | 658..853 | 98 | <- | Minus |
2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:14 Download gff for
BO04427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978161..8978357 | 658..853 | 98 | <- | Minus |
arm_2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
arm_2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
arm_2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
arm_2L | 8980048..8980164 | 10..127 | 97 | | Minus |
BO04427.complete Sequence
988 bp (988 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629755
> BO04427.complete
GAAGTTATCAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTAC
ACCCAGTGAAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGAT
ACCCCCGATGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTAT
GGCCTATTTGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGG
TAATAATCTCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTC
TACTTTATCTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAA
CGTCTTGGGTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATG
CGGATAAACTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTAC
TGGGGTATGCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCAT
CTACTGGAGTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAA
ATGTACTCACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGG
ATTGTAGCTCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATT
CGGAGTTGTGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCA
TTAATAAGAAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAA
CCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTG
CATTTATGTGCTGCTCTTTGCCTTCTTCAAACTGAGATTATTCCTCCATC
GACGCTGTCGAAATGCAAATTTCGTACTGCCCACCAGTGCGAAATCAAAT
GGTCAAACTAATGGATTAGACGATAAATCCGGAAATGGAATTCAGCACTC
ACCATCTCGCATATCAATGGTATTGGGCAATTTCGCTGGCTATGAGAATC
AGGCTTATTTGCCCACTGGCGCAAGCTTTCTAGACCAT
BO04427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 957 | CG13101-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
CG13101-RA | 957 | CG13101-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-RB | 1589 | CG13101-RB | 425..1378 | 17..970 | 4770 | 100 | Plus |
CG13101-RA | 1396 | CG13101-RA | 360..1313 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8978045..8978361 | 970..654 | 1570 | 99.7 | Minus |
2L | 23513712 | 2L | 8978858..8979086 | 353..125 | 1145 | 100 | Minus |
2L | 23513712 | 2L | 8978420..8978605 | 658..473 | 930 | 100 | Minus |
2L | 23513712 | 2L | 8978663..8978787 | 477..353 | 610 | 99.2 | Minus |
2L | 23513712 | 2L | 8980048..8980158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:49 has no hits.
BO04427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:55 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:24 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 417..1384 | 10..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:02 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 360..1313 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:55 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RB | 417..1384 | 10..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:02 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13101-RA | 360..1313 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:02 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
2L | 8980048..8980158 | 17..127 | 100 | | Minus |
2L | 8978043..8978357 | 658..972 | 99 | <- | Minus |
2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:02 Download gff for
BO04427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8978858..8979083 | 128..353 | 100 | <- | Minus |
arm_2L | 8980048..8980158 | 17..127 | 100 | | Minus |
arm_2L | 8978043..8978357 | 658..972 | 99 | <- | Minus |
arm_2L | 8978421..8978604 | 474..657 | 100 | <- | Minus |
arm_2L | 8978667..8978786 | 354..473 | 100 | <- | Minus |
BO04427.pep Sequence
Translation from 16 to 988
> BO04427.pep
MSRMSKLQVIVHPVKKEFQRKSCGFDHDTPDDFVKSQWQSCTKSMAYLFY
RWFMAMFFVVVVIISMWPETDDATSYWLYFIYMTNWGIWMCMLTNVLGAI
LVTIWHYHPEYADKLLNMKSYFSYFRLYWGMHIISLVLSIVITIIYWSIL
YDANESALDATNVLTHAFNSICMFIDLWIVAHPLRLLHIFLPVLFGVVFA
IFSYIYHLCGGINKKGKPYIYYVIDWSKPQNAFTTVVGVLLLSCCIYVLL
FAFFKLRLFLHRRCRNANFVLPTSAKSNGQTNGLDDKSGNGIQHSPSRIS
MVLGNFAGYENQAYLPTGASFLDH
BO04427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13101-PB | 318 | CG13101-PB | 1..318 | 1..318 | 1726 | 100 | Plus |
CG13101-PA | 318 | CG13101-PA | 1..318 | 1..318 | 1726 | 100 | Plus |
CG9555-PC | 275 | CG9555-PC | 12..267 | 13..277 | 488 | 35.2 | Plus |
CG9555-PA | 275 | CG9555-PA | 12..267 | 13..277 | 488 | 35.2 | Plus |
rost-PC | 275 | CG9552-PC | 13..261 | 16..262 | 470 | 34.8 | Plus |