Clone BO04428 Report

Search the DGRC for BO04428

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG9948-RA
Protein status:BO04428.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO04428.3prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-01

> BO04428.3prime
ATGGTCTAGAAAGCTTGCGATGCTAAGGTCCTCCACGGACTGATTACTCA
AGGCACGCAGCTGGCACTTGAGCAGAAATGCTGTAATCCTTCGTTCTGCC
CTTCTCCGCTGCGGTTCCTTTAGTTGGGCCAGTATTTGGTCCATCTGGAG
AAAGCTGCTTCTGGGCGAGATTATTTCAGCGGGCTCTTGTTCCTCGTAGA
TGATTTCCTCTTGGATGATCTGTTCACTGGGCTCCTCGATGACCTCCTCG
ATTATGAACGTACTCGACTGCTGTGGAACATCCCCATCCTCAAAAGTGTC
CCACAAAAATTGCACAGGAGTTTCCGTCTGGATGGTCGCCTCCTGTTTGT
TTGTTTTGGGTTTGGTTTTCACTTTGGAGGGCGGCTGGATCTCGGCCAAA
AATCGCAGGCGTTCCAGGTACGGCCAGGTGGATCCACTGGTGTCCGCGCG
GCGAAACTCCTTGCGAAACTGATAGTGCAGATTGTTCCAGCGCATCAGGC
AGAAGTCCACATCACAGCCCATCATCTCGGCTATGCGAGCCCAGATATCG
GTTTTCGCCTTCATGGCATCGTAGTTCGAGAGTCCAGATCTCTTATAGAG
CACAGGATTGGGTTCCACCAGATCAATTAGCTTGAAGTCGAAAGGTCTGT
TTTTCTTGTAACTGGTGCGCATGTCGACTGATAACT

BO04428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PA 657 CG9948-RA 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..725 673..19 3275 100 Minus
CG9948-RB 1394 CG9948-RB 244..898 673..19 3275 100 Minus
CG9948-RA 792 CG9948-RA 84..738 673..19 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956944 510..19 2460 100 Minus
3L 28110227 3L 6956234..6956397 673..510 820 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:26:50 has no hits.

BO04428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:43 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:42 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:39 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 9..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:57 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 9..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:57 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956229..6956397 510..678 98 -> Minus
3L 6956454..6956951 9..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:39 Download gff for BO04428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949329..6949497 510..678 98 -> Minus
arm_3L 6949554..6950051 9..509 99   Minus

BO04428.5prime Sequence

686 bp (685 high quality bases) assembled on 2005-11-29

> BO04428.5prime
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCGCAAGCTTTCTAGACC

BO04428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PA 657 CG9948-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..725 16..670 3275 100 Plus
CG9948-RB 1394 CG9948-RB 244..898 16..670 3275 100 Plus
CG9948-RA 792 CG9948-RA 84..738 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956944 179..670 2460 100 Plus
3L 28110227 3L 6956234..6956397 16..179 820 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:21:24 has no hits.

BO04428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:44 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:43 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:24 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 11..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:50 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 79..745 11..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:50 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956229..6956397 11..179 98 -> Plus
3L 6956454..6956951 180..680 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:24 Download gff for BO04428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949329..6949497 11..179 98 -> Plus
arm_3L 6949554..6950051 180..680 99   Plus

BO04428.complete Sequence

688 bp (688 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629756

> BO04428.complete
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCGCAAGCTTTCTAGACCAT

BO04428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 657 CG9948-PC 1..654 17..670 3270 100 Plus
CG9948-RB 657 CG9948-PB 1..654 17..670 3270 100 Plus
CG9948-RA 657 CG9948-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..725 16..670 3275 100 Plus
CG9948-RB 1394 CG9948-RB 244..898 16..670 3275 100 Plus
CG9948-RA 792 CG9948-RA 84..738 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956944 179..670 2460 100 Plus
3L 28110227 3L 6956234..6956397 16..179 820 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:45:55 has no hits.

BO04428.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:12 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:38 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 70..736 11..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:46 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 85..738 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:12 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 70..736 11..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:46 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 85..738 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:46 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6956235..6956397 17..179 100 -> Plus
3L 6956454..6956944 180..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:46 Download gff for BO04428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949335..6949497 17..179 100 -> Plus
arm_3L 6949554..6950044 180..672 99   Plus

BO04428.pep Sequence

Translation from 16 to 688

> BO04428.pep
MRTSYKKNRPFDFKLIDLVEPNPVLYKRSGLSNYDAMKAKTDIWARIAEM
MGCDVDFCLMRWNNLHYQFRKEFRRADTSGSTWPYLERLRFLAEIQPPSK
VKTKPKTNKQEATIQTETPVQFLWDTFEDGDVPQQSSTFIIEEVIEEPSE
QIIQEEIIYEEQEPAEIISPRSSFLQMDQILAQLKEPQRRRAERRITAFL
LKCQLRALSNQSVEDLSIASFLDH

BO04428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-PC 218 CG9948-PC 1..218 1..218 1131 100 Plus
CG9948-PB 218 CG9948-PB 1..218 1..218 1131 100 Plus
CG9948-PA 218 CG9948-PA 1..218 1..218 1131 100 Plus
CG6683-PA 197 CG6683-PA 4..197 11..218 205 28.8 Plus