Clone Sequence Records
BO04428.3prime Sequence
686 bp (685 high quality bases) assembled on 2005-12-01
> BO04428.3prime
ATGGTCTAGAAAGCTTGCGATGCTAAGGTCCTCCACGGACTGATTACTCA
AGGCACGCAGCTGGCACTTGAGCAGAAATGCTGTAATCCTTCGTTCTGCC
CTTCTCCGCTGCGGTTCCTTTAGTTGGGCCAGTATTTGGTCCATCTGGAG
AAAGCTGCTTCTGGGCGAGATTATTTCAGCGGGCTCTTGTTCCTCGTAGA
TGATTTCCTCTTGGATGATCTGTTCACTGGGCTCCTCGATGACCTCCTCG
ATTATGAACGTACTCGACTGCTGTGGAACATCCCCATCCTCAAAAGTGTC
CCACAAAAATTGCACAGGAGTTTCCGTCTGGATGGTCGCCTCCTGTTTGT
TTGTTTTGGGTTTGGTTTTCACTTTGGAGGGCGGCTGGATCTCGGCCAAA
AATCGCAGGCGTTCCAGGTACGGCCAGGTGGATCCACTGGTGTCCGCGCG
GCGAAACTCCTTGCGAAACTGATAGTGCAGATTGTTCCAGCGCATCAGGC
AGAAGTCCACATCACAGCCCATCATCTCGGCTATGCGAGCCCAGATATCG
GTTTTCGCCTTCATGGCATCGTAGTTCGAGAGTCCAGATCTCTTATAGAG
CACAGGATTGGGTTCCACCAGATCAATTAGCTTGAAGTCGAAAGGTCTGT
TTTTCTTGTAACTGGTGCGCATGTCGACTGATAACT
BO04428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PA | 657 | CG9948-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..725 | 673..19 | 3275 | 100 | Minus |
CG9948-RB | 1394 | CG9948-RB | 244..898 | 673..19 | 3275 | 100 | Minus |
CG9948-RA | 792 | CG9948-RA | 84..738 | 673..19 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956944 | 510..19 | 2460 | 100 | Minus |
3L | 28110227 | 3L | 6956234..6956397 | 673..510 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:26:50 has no hits.
BO04428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:43 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:42 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:47:39 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 9..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:57 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 9..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:57 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956229..6956397 | 510..678 | 98 | -> | Minus |
3L | 6956454..6956951 | 9..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:47:39 Download gff for
BO04428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949329..6949497 | 510..678 | 98 | -> | Minus |
arm_3L | 6949554..6950051 | 9..509 | 99 | | Minus |
BO04428.5prime Sequence
686 bp (685 high quality bases) assembled on 2005-11-29
> BO04428.5prime
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCGCAAGCTTTCTAGACC
BO04428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PA | 657 | CG9948-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..725 | 16..670 | 3275 | 100 | Plus |
CG9948-RB | 1394 | CG9948-RB | 244..898 | 16..670 | 3275 | 100 | Plus |
CG9948-RA | 792 | CG9948-RA | 84..738 | 16..670 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956944 | 179..670 | 2460 | 100 | Plus |
3L | 28110227 | 3L | 6956234..6956397 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:21:24 has no hits.
BO04428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:44 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:43 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:41:24 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 11..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:50 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 79..745 | 11..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:50 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956229..6956397 | 11..179 | 98 | -> | Plus |
3L | 6956454..6956951 | 180..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:41:24 Download gff for
BO04428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949329..6949497 | 11..179 | 98 | -> | Plus |
arm_3L | 6949554..6950051 | 180..680 | 99 | | Plus |
BO04428.complete Sequence
688 bp (688 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629756
> BO04428.complete
GAAGTTATCAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCG
ACTTCAAGCTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGA
TCTGGACTCTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGC
TCGCATAGCCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCT
GGAACAATCTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACC
AGTGGATCCACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGAT
CCAGCCGCCCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGG
CGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAG
GATGGGGATGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCAT
CGAGGAGCCCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAAC
AAGAGCCCGCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGAC
CAAATACTGGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAG
GATTACAGCATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGT
CCGTGGAGGACCTTAGCATCGCAAGCTTTCTAGACCAT
BO04428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 657 | CG9948-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
CG9948-RB | 657 | CG9948-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
CG9948-RA | 657 | CG9948-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-RC | 779 | CG9948-RC | 71..725 | 16..670 | 3275 | 100 | Plus |
CG9948-RB | 1394 | CG9948-RB | 244..898 | 16..670 | 3275 | 100 | Plus |
CG9948-RA | 792 | CG9948-RA | 84..738 | 16..670 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6956453..6956944 | 179..670 | 2460 | 100 | Plus |
3L | 28110227 | 3L | 6956234..6956397 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:55 has no hits.
BO04428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:12 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:38 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 70..736 | 11..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:46 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 85..738 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:12 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 70..736 | 11..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:46 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9948-RA | 85..738 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:46 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956235..6956397 | 17..179 | 100 | -> | Plus |
3L | 6956454..6956944 | 180..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:46 Download gff for
BO04428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6949335..6949497 | 17..179 | 100 | -> | Plus |
arm_3L | 6949554..6950044 | 180..672 | 99 | | Plus |
BO04428.pep Sequence
Translation from 16 to 688
> BO04428.pep
MRTSYKKNRPFDFKLIDLVEPNPVLYKRSGLSNYDAMKAKTDIWARIAEM
MGCDVDFCLMRWNNLHYQFRKEFRRADTSGSTWPYLERLRFLAEIQPPSK
VKTKPKTNKQEATIQTETPVQFLWDTFEDGDVPQQSSTFIIEEVIEEPSE
QIIQEEIIYEEQEPAEIISPRSSFLQMDQILAQLKEPQRRRAERRITAFL
LKCQLRALSNQSVEDLSIASFLDH
BO04428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9948-PC | 218 | CG9948-PC | 1..218 | 1..218 | 1131 | 100 | Plus |
CG9948-PB | 218 | CG9948-PB | 1..218 | 1..218 | 1131 | 100 | Plus |
CG9948-PA | 218 | CG9948-PA | 1..218 | 1..218 | 1131 | 100 | Plus |
CG6683-PA | 197 | CG6683-PA | 4..197 | 11..218 | 205 | 28.8 | Plus |