Clone BO04431 Report

Search the DGRC for BO04431

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptMED25-RA
Protein status:BO04431.pep: Imported from assembly
Sequenced Size:2623

Clone Sequence Records

BO04431.3prime Sequence

864 bp (804 high quality bases) assembled on 2005-12-01

> BO04431.3prime
ATGGTCTAGAAAGCTTGCCATGAACTCATAGTTTCCGTCGTCAAAGTTGC
GATTGCCGACCATTGGACCGCCTGCTCCCATTTGATTGGGATTCTGGCCA
CCCATTTGCGGCCGGAACTGATTGCCTGGCGTGGTCTGGTGCTGCAAGAG
CTGGCGCAGCCCCGGGTTGTTGTTGCTCATCATGGGACGCACCATGCGCT
GCTGCTGCTGTTGCGCCTGCTGCTGCTGCATTGCGGCGACGTTTGGCGCC
ACTTGTTGCAACTGCTGCTGGAGGTTTGGATTGGGCACGCCACCGGGACC
AACACCCACGCCAACACCTACGCCCAGTGGCATTCGCTGTTGCTGCATCA
TGTTCATCTGCATTTGATTCTGTTGCATGGGCATGCCGCCGGGACCGGGA
CCAGGTCCGCCGCCAGGACCTCCACCACCCATCTGCATATTGAGTTGGAA
CTGGTTGTAGTGTTGCTGCTGCGAGTTATCCTGTTGCATCTGTTGCTGCT
GTTGTTGTTGTTGCTGTTGCTGCTGCAGCTCCATGGGCGACTTGCCTTGC
TGCTGCATCATTTGCTGCTGTTGCTGCTGCTGTTGCATGTTGCCGTGCTG
CTTTTGCTGTATGACTTTGCGCAGACGTTCCACAAACATTGCCTGATTAT
TGGGAATGAAGCCCAGAAAAGCGTTGCGATCGGGCGTGTAGAGTAGGATG
AGAACCTTAAGGTCACAGGCTGGTGAGTTGGGGATGGAGGAGAAGTGGAC
GCAGCCAGCATAGCCGGAGGTCATCATCTTGGCCAGCGAATCGAGTGCCT
CTCCTGGAGTGGGTCGAAAAACAACCATTTTCGAGTCCTTGAGAAACTGC
CCACCAATAATTGC

BO04431.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12254-PA 2592 MED25-RA 1749..2589 859..19 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
MED25-RA 2766 CG12254-RA 1862..2702 859..19 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20010808..20011648 859..19 4205 100 Minus
Blast to na_te.dros performed 2015-02-13 02:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2659 566..491 139 70.5 Minus

BO04431.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:46 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
MED25-PA 1745..2592 18..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:48 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12254-PA 1745..2592 18..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:26 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 1858..2711 8..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:03 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 1858..2711 8..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:03 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20010804..20011657 8..864 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:26 Download gff for BO04431.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15836526..15837379 8..864 99   Minus

BO04431.5prime Sequence

796 bp (723 high quality bases) assembled on 2005-12-01

> BO04431.5prime
GAAGTTATCAGTCGACATGGAGGTGGACCAGATTCCCCTGGCCGACGTGG
TCTTCGTCATCGAGGGCAGCGCCATCAACGGAGCCTACATCAACGAACTA
AAGACCAACTACATCCTGCCGACTTTGGAGCACTTCACCACTGGCTCCAT
CGACGAGCGGGAATACCTGATTGCGGAGCGCTTTGCCACTCTGTACGGTA
TTGTGGTCTACCGTACAGCGGCCAATCTGCTGGAGCCAGTTTGTTCAACC
TATGGTCCCTTTCTGCAGCCCCAAAAAGTGATGGAGACGATCGAAAGATT
GCCACTAGTGGGAGGCGGAATGGAGTCCTGTGCCCACATGGCCGAAGGAT
TTGCTGCGGCCCACGGCTGTTTTGATGACATCAGCGAAAGGCGCCAGTTG
CTCGATCAGACCAGCGTCCAGAGGCACTGCATTCTCATCTGCAACAGTCC
GCCGTACCAGATGCCCACAACGGAGTCGTGGAAGTATCCGGGCAAATCAT
GTGAGCAGCTGGCGGCGCTCTTCAACGAGCGCAAAATCAATCTCTCCATT
ATTGCGCCACGCAAGATGCCGGTGTTGTTCAAACTTTTCATGAAGGCCGA
CGGAGATCAGCCCATTACGAGCAAAAACTATGCCAAGAACATAAGACACC
TAGTGCTTCTAAAGGGATACAGCCTCAAGGAGAGAGCACCTAGTCCCAAC
AGCATGGCGGCCCAAATGGCTGCACCCAATGCGGCACAGGCTACAGTGCA
GCAGCAACAACAACAGCAACAAAATCAAGCTGGTCAGCAACAACAA

BO04431.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12254-PA 2592 MED25-RA 1..780 17..796 3900 100 Plus
CG10732-PA 4974 CG10732-RA 4068..4097 748..777 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
MED25-RA 2766 CG12254-RA 114..893 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20009060..20009839 17..796 3900 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:23:58 has no hits.

BO04431.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:47 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
MED25-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:49 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12254-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:16:44 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 106..891 7..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:31:54 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 106..891 7..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:31:54 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20009052..20009837 7..794 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:16:44 Download gff for BO04431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15834774..15835559 7..794 99   Plus

BO04431.complete Sequence

2623 bp assembled on 2008-08-14

GenBank Submission: FJ629758

> BO04431.complete
GAAGTTATCAGTCGACATGGAGGTGGACCAGATTCCCCTGGCCGACGTGG
TCTTCGTCATCGAGGGCAGCGCCATCAACGGAGCCTACATCAACGAACTA
AAGACCAACTACATCCTGCCGACTTTGGAGCACTTCACCACTGGCTCCAT
CGACGAGCGGGAATACCTGATTGCGGAGCGCTTTGCCACTCTGTACGGTA
TTGTGGTCTACCGTACAGCGGCCAATCTGCTGGAGCCAGTTTGTTCAACC
TATGGTCCCTTTCTGCAGCCCCAAAAAGTGATGGAGACGATCGAAAGATT
GCCACTAGTGGGAGGCGGAATGGAGTCCTGTGCCCACATGGCCGAAGGAT
TTGCTGCGGCCCACGGCTGTTTTGATGACATCAGCGAAAGGCGCCAGTTG
CTCGATCAGACCAGCGTCCAGAGGCACTGCATTCTCATCTGCAACAGTCC
GCCGTACCAGATGCCCACAACGGAGTCGTGGAAGTATCCGGGCAAATCAT
GTGAGCAGCTGGCGGCGCTCTTCAACGAGCGCAAAATCAATCTCTCCATT
ATTGCGCCACGCAAGATGCCGGTGTTGTTCAAACTTTTCATGAAGGCCGA
CGGAGATCAGCCCATTACGAGCAAAAACTATGCCAAGAACATAAGACACC
TAGTGCTTCTAAAGGGATACAGCCTCAAGGAGAGAGCACCTAGTCCCAAC
AGCATGGCGGCCCAAATGGCTGCACCCAATGCGGCACAGGCTACAGTGCA
GCAGCAACAACAACAGCAACAAAATCAAGCTGGTCAGCAACAACAAGGGC
AGGGCATGCCCATGGACACCACTCCAGCCCAGCAGCAGCAACAGCAACAA
CAACAGCAGCAGCAACAGCAACAACAAGGCAATCCTCAGCAGCAGGTCAT
GAACATGAACACGATGCAGCAACAGCAGCCCGGTCCAAATCCCCCAGCGG
GCTTACTCAATCCACAGCAGCAGCAGCAACTATTGCAGCAGCAGCAGCAG
AATCAATTCGTTTCCAATCAAATGCAGAATCAGAACTTCCAGCAAAACGT
GGGACCCGGCCAAAACCGCTGGATGTATCCCAACCAGCCTGGTCAGGCGC
GTCCGCCCTTCATGCAGGGAGCAGGCAATGTGGGCGGTGTGGGCCAAGGC
GGCGGCATGCAACAGAATCCAAATTCTGCTCTGATATCGCGCATTAATGC
GCCGCCGCCGAACCAAACTGTGACCTCGCTGCAGCAGCAGCAACAGCAGC
AGGCGCAGCAGCAGCAGCAGCAGCAACAACAGGCCCAACAGCAGCAGCAA
CAAAGGATGCAGATGCTGAGCCAGCAGCAGATGCTAAATCACCAGCAGTT
GCAGCAGCAACAGCAACTGGCCCAGCAACAGCAACAGCAGCAGCAAGGAC
AGCAACAGCAGCAGGTAAATCCCAATGCAGGAAACAATATGATGCCGGCT
AGCAATGCCGGCAACATGTCTAATCCGCAGCAGCAGCAACAACAAGTAGG
ACAACAGTCGAATCCGCAGCAGCAGGGCAATCCGCAGCAGCAACAGCAGG
GAAATTCGCAGCAGGAGCAGGCCTCCTTGAGGGAAAAGATATGGACCGGA
GTGCTGGAGTGGTCAGAGAAGCCAAAGTCCGATCAACAGAAGATTCCCCA
TACACTCCAGTGTACCGTGTGCACCAACATCAAAGATGGCGAGCCCGAGA
TCAAGGCTGAGAACTGGCCGCCCAAGCTGTTGATGCAGCTAATGCCCAAG
CACCTAGTTGGCAATATTGGTGGGCAGTTTCTCAAGGACTCGAAAATGGT
TGTTTTTCGACCCACTCCAGGAGAGGCACTCGATTCGCTGGCCAAGATGA
TGACCTCCGGCTATGCTGGCTGCGTCCACTTCTCCTCCATCCCCAACTCA
CCAGCCTGTGACCTTAAGGTTCTCATCCTACTCTACACGCCCGATCGCAA
CGCTTTTCTGGGCTTCATTCCCAATAATCAGGCAATGTTTGTGGAACGTC
TGCGCAAAGTCATACAGCAAAAGCAGCACGGCAACATGCAACAGCAGCAG
CAACAGCAGCAAATGATGCAGCAGCAAGGCAAGTCGCCCATGGAGCTGCA
GCAGCAACAGCAACAACAACAACAGCAGCAACAGATGCAACAGGATAACT
CGCAGCAGCAACACTACAACCAGTTCCAACTCAATATGCAGATGGGTGGT
GGAGGTCCTGGCGGCGGACCTGGTCCCGGTCCCGGCGGCATGCCCATGCA
ACAGAATCAAATGCAGATGAACATGATGCAGCAACAGCGAATGCCACTGG
GCGTAGGTGTTGGCGTGGGTGTTGGTCCCGGTGGCGTGCCCAATCCAAAC
CTCCAGCAGCAGTTGCAACAAGTGGCGCCAAACGTCGCCGCAATGCAGCA
GCAGCAGGCGCAACAGCAGCAGCAGCGCATGGTGCGTCCCATGATGAGCA
ACAACAACCCGGGGCTGCGCCAGCTCTTGCAGCACCAGACCACGCCAGGC
AATCAGTTCCGGCCGCAAATGGGTGGCCAGAATCCCAATCAAATGGGAGC
AGGCGGTCCAATGGTCGGCAATCGCAACTTTGACGACGGAAACTATGAGT
TCATGGCAAGCTTTCTAGACCAT

BO04431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
MED25-RA 2592 CG12254-PA 1..2589 17..2605 12945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
MED25-RA 2766 CG12254-RA 114..2702 17..2605 12945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20009060..20011648 17..2605 12945 100 Plus
Blast to na_te.dros performed 2014-11-27 15:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..3034 838..1545 407 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2977 919..1569 357 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6952 1288..1522 329 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2549 1305..1563 324 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2999 669..1357 309 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6944 757..995 309 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..3004 859..1569 306 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6923 840..1043 299 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6931 1364..1584 298 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6906 830..1005 285 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6915 1338..1524 283 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2200..2484 1264..1562 235 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6502..6847 1230..1570 230 56.2 Plus
roo 9092 roo DM_ROO 9092bp 1057..1154 829..929 218 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2200..2422 1354..1569 206 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6835 1286..1570 199 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2473 1390..1569 183 60 Plus
roo 9092 roo DM_ROO 9092bp 1062..1141 1473..1549 158 70 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3188..3369 1370..1548 155 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2442 1473..1562 151 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6862 965..1048 150 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2659 2058..2133 139 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1583 1484..1549 123 65.2 Plus

BO04431.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:45 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 57..2662 7..2616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:20 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 114..2702 17..2607 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:22 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 65..2653 17..2607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:12 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
MED25-RA 114..2702 17..2607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:12 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20009060..20011648 17..2607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:20 Download gff for BO04431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15834782..15837370 17..2607 99   Plus

BO04431.pep Sequence

Translation from 16 to 2623

> BO04431.pep
MEVDQIPLADVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREY
LIAERFATLYGIVVYRTAANLLEPVCSTYGPFLQPQKVMETIERLPLVGG
GMESCAHMAEGFAAAHGCFDDISERRQLLDQTSVQRHCILICNSPPYQMP
TTESWKYPGKSCEQLAALFNERKINLSIIAPRKMPVLFKLFMKADGDQPI
TSKNYAKNIRHLVLLKGYSLKERAPSPNSMAAQMAAPNAAQATVQQQQQQ
QQNQAGQQQQGQGMPMDTTPAQQQQQQQQQQQQQQQQGNPQQQVMNMNTM
QQQQPGPNPPAGLLNPQQQQQLLQQQQQNQFVSNQMQNQNFQQNVGPGQN
RWMYPNQPGQARPPFMQGAGNVGGVGQGGGMQQNPNSALISRINAPPPNQ
TVTSLQQQQQQQAQQQQQQQQQAQQQQQQRMQMLSQQQMLNHQQLQQQQQ
LAQQQQQQQQGQQQQQVNPNAGNNMMPASNAGNMSNPQQQQQQVGQQSNP
QQQGNPQQQQQGNSQQEQASLREKIWTGVLEWSEKPKSDQQKIPHTLQCT
VCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPT
PGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGF
IPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMMQQQGKSPMELQQQQQQ
QQQQQQMQQDNSQQQHYNQFQLNMQMGGGGPGGGPGPGPGGMPMQQNQMQ
MNMMQQQRMPLGVGVGVGVGPGGVPNPNLQQQLQQVAPNVAAMQQQQAQQ
QQQRMVRPMMSNNNPGLRQLLQHQTTPGNQFRPQMGGQNPNQMGAGGPMV
GNRNFDDGNYEFMASFLDH

BO04431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
MED25-PA 863 CG12254-PA 1..863 1..863 4554 100 Plus
CG13609-PA 364 CG13609-PA 31..265 503..744 435 37.6 Plus
ptip-PA 2294 CG32133-PA 947..1524 244..844 435 32.9 Plus
ptip-PA 2294 CG32133-PA 797..1348 238..819 432 31 Plus
ptip-PA 2294 CG32133-PA 644..1215 223..842 431 29.6 Plus
kto-PA 2531 CG8491-PA 1922..2529 216..808 419 30.5 Plus
ptip-PA 2294 CG32133-PA 202..872 241..845 393 29 Plus
ptip-PA 2294 CG32133-PA 977..1634 227..842 393 30.9 Plus
CG13609-PA 364 CG13609-PA 171..355 479..668 374 41.1 Plus
velo-PC 1833 CG10107-PC 51..725 224..833 363 28.2 Plus
ptip-PA 2294 CG32133-PA 188..695 392..848 295 28.8 Plus
kto-PA 2531 CG8491-PA 1913..2400 372..854 243 26.6 Plus
ptip-PA 2294 CG32133-PA 1395..1773 207..529 238 31.9 Plus
ptip-PA 2294 CG32133-PA 1280..1775 226..769 209 27.2 Plus
kto-PA 2531 CG8491-PA 2314..2530 246..469 205 34.1 Plus
MED25-PA 863 CG12254-PA 225..479 652..865 201 31.8 Plus
ptip-PA 2294 CG32133-PA 1541..1790 241..490 191 31.7 Plus