Clone Sequence Records
BO04434.3prime Sequence
960 bp (855 high quality bases) assembled on 2005-12-01
> BO04434.3prime
ATGGTCTAGAAAGCTTGCCTTGGACTCCACTTGCGATGTGGCCTTGGCCT
TATCCTCTCGAGCGCATTTGCGTATAACACTATTGAAGTACTTGTGCAGA
GCGTAGCTAACTATTCGCAGTGGTCCCAAAACTATGGCGTGCAGAAGATT
GGTGAAGAAGCCATCCCAAGGAAGCAATGCTCCACCCAAAGTGGTGATCA
GCCAGCTTTCTGCTCCAACAGTTGAGGTGAATTTTCCCTTCAGGGCATCC
TTAAGTATAGCTTTCGCCATAACTTCCGGCTCTATGAGACCTCCTCCACC
AGAGATTATTTTGGTTTCCCTGGGCTTTGACTTCTCCTCCTCCTCGAATC
CGGGTGTATTCGTATCGCAGGGCATGGCCAGAGTGACGCTGACCCCGTGC
TCCCGAGACTCCATTGCAATCGTTTCAGCCATCGCTCTCAGGGCGTACTT
GGTGGCTGAGTAAGGACCGTATCCATAGATGCCAAACATAGCCGCCTGTG
AGGCAGTGATTACAATAATGCCGTCGCCGGCTTTCTTCATTTTGGGCAGG
ACATAACGGGTGCAGTTATAGGTGCCGAAGAAGTTTACGTTCATCAGCTT
GTGGACATCCTGGACTGAGACCTCCTCGAACACACCGCAAATGGCCATTC
CGGCACAGTTTATTAAAGTGTATATGGGGCCGAAGCTATCTTCGATCTCG
CCAAGCACTTTGGCCACCTGGTCATAATCGCCGCTTATGTCCAGACTTCT
GTACTGGAACTTTTGATCTGGCCGCTGGCGAATCACTTCCATCAGAGCCA
CTGCTCCGCTCAGCATTTTCTCGTCGCGCGCTATCACCGTCACATTGGCG
CCTTTCATGGCGCACTCCACCGCCAGACAGAGTCCGATTCCCTTGGAGCC
GCCGGTGACCACCACATGACGACCCCAATGCTCCTCGGTTTCTTGGCCAT
GACGAACACG
BO04434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-PA | 1011 | CG10425-RA | 102..1008 | 925..19 | 4535 | 100 | Minus |
CG10425-PA | 1011 | CG10425-RA | 66..100 | 960..926 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-RA | 1402 | CG10425-RA | 164..1106 | 960..19 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25261545..25262113 | 241..809 | 2845 | 100 | Plus |
3R | 32079331 | 3R | 25261259..25261481 | 19..241 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 25262183..25262335 | 809..960 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:05:27 has no hits.
BO04434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:48 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-PA | 66..1011 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:50 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-PA | 66..1011 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:28 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 164..1118 | 8..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:55 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 164..1118 | 8..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:55 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25261247..25261480 | 8..240 | 98 | <- | Plus |
3R | 25261545..25262113 | 241..809 | 100 | <- | Plus |
3R | 25262184..25262335 | 810..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:28 Download gff for
BO04434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21086969..21087202 | 8..240 | 98 | <- | Plus |
arm_3R | 21087267..21087835 | 241..809 | 100 | <- | Plus |
arm_3R | 21087906..21088057 | 810..960 | 99 | | Plus |
BO04434.5prime Sequence
902 bp (780 high quality bases) assembled on 2005-12-01
> BO04434.5prime
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCC
TGAAGGGAAAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACC
ACTTTGGGTGGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCT
GC
BO04434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-PA | 1011 | CG10425-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-RA | 1402 | CG10425-RA | 98..984 | 16..902 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25261545..25262113 | 802..234 | 2845 | 100 | Minus |
3R | 32079331 | 3R | 25262183..25262401 | 234..16 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 25261381..25261481 | 902..802 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:04:03 has no hits.
BO04434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:49 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:52 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:01 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 90..984 | 7..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:29 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 90..984 | 7..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:29 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25261381..25261480 | 803..902 | 100 | <- | Minus |
3R | 25261545..25262113 | 234..802 | 100 | <- | Minus |
3R | 25262184..25262409 | 7..233 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:01 Download gff for
BO04434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21087906..21088131 | 7..233 | 98 | | Minus |
arm_3R | 21087103..21087202 | 803..902 | 100 | <- | Minus |
arm_3R | 21087267..21087835 | 234..802 | 100 | <- | Minus |
BO04434.complete Sequence
1042 bp (1042 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629759
> BO04434.complete
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCC
TGAAGGGAAAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACC
ACTTTGGGTGGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCT
GCACGCCATAGTTTTGGGACCACTGCGAATAGTTAGCTACGCTCTGCACA
AGTACTTCAATAGTGTTATACGCAAATGCGCTCGAGAGGATAAGGCCAAG
GCCACATCGCAAGTGGAGTCCAAGGCAAGCTTTCTAGACCAT
BO04434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-RA | 1011 | CG10425-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-RA | 1402 | CG10425-RA | 98..1106 | 16..1024 | 5045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25261545..25262113 | 802..234 | 2845 | 100 | Minus |
3R | 32079331 | 3R | 25261259..25261481 | 1024..802 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 25262183..25262401 | 234..16 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:02:06 has no hits.
BO04434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:06 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 1..1011 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:41 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 86..1114 | 7..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:36 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 99..1106 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:06 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 86..1114 | 7..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:23 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10425-RA | 99..1106 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:23 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25261256..25261480 | 803..1026 | 99 | <- | Minus |
3R | 25261545..25262113 | 234..802 | 100 | <- | Minus |
3R | 25262184..25262400 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:36 Download gff for
BO04434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21086978..21087202 | 803..1026 | 99 | <- | Minus |
arm_3R | 21087267..21087835 | 234..802 | 100 | <- | Minus |
arm_3R | 21087906..21088122 | 17..233 | 100 | | Minus |
BO04434.pep Sequence
Translation from 16 to 1042
> BO04434.pep
MELSWEIVFCVGIAVLVHVLVYVFVMAKKPRSIVGRHVVVTGGSKGIGLC
LAVECAMKGANVTVIARDEKMLSGAVALMEVIRQRPDQKFQYRSLDISGD
YDQVAKVLGEIEDSFGPIYTLINCAGMAICGVFEEVSVQDVHKLMNVNFF
GTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYGYGPYSATKYALRAMA
ETIAMESREHGVSVTLAMPCDTNTPGFEEEEKSKPRETKIISGGGGLIEP
EVMAKAILKDALKGKFTSTVGAESWLITTLGGALLPWDGFFTNLLHAIVL
GPLRIVSYALHKYFNSVIRKCAREDKAKATSQVESKASFLDH
BO04434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10425-PA | 336 | CG10425-PA | 1..336 | 1..336 | 1723 | 100 | Plus |
CG15629-PA | 325 | CG15629-PA | 49..247 | 28..227 | 209 | 29.1 | Plus |
CG7322-PC | 242 | CG7322-PC | 5..177 | 33..219 | 195 | 31.6 | Plus |
CG7322-PB | 242 | CG7322-PB | 5..177 | 33..219 | 195 | 31.6 | Plus |
CG7322-PA | 242 | CG7322-PA | 5..177 | 33..219 | 195 | 31.6 | Plus |