Clone BO04434 Report

Search the DGRC for BO04434

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG10425-RA
Protein status:BO04434.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO04434.3prime Sequence

960 bp (855 high quality bases) assembled on 2005-12-01

> BO04434.3prime
ATGGTCTAGAAAGCTTGCCTTGGACTCCACTTGCGATGTGGCCTTGGCCT
TATCCTCTCGAGCGCATTTGCGTATAACACTATTGAAGTACTTGTGCAGA
GCGTAGCTAACTATTCGCAGTGGTCCCAAAACTATGGCGTGCAGAAGATT
GGTGAAGAAGCCATCCCAAGGAAGCAATGCTCCACCCAAAGTGGTGATCA
GCCAGCTTTCTGCTCCAACAGTTGAGGTGAATTTTCCCTTCAGGGCATCC
TTAAGTATAGCTTTCGCCATAACTTCCGGCTCTATGAGACCTCCTCCACC
AGAGATTATTTTGGTTTCCCTGGGCTTTGACTTCTCCTCCTCCTCGAATC
CGGGTGTATTCGTATCGCAGGGCATGGCCAGAGTGACGCTGACCCCGTGC
TCCCGAGACTCCATTGCAATCGTTTCAGCCATCGCTCTCAGGGCGTACTT
GGTGGCTGAGTAAGGACCGTATCCATAGATGCCAAACATAGCCGCCTGTG
AGGCAGTGATTACAATAATGCCGTCGCCGGCTTTCTTCATTTTGGGCAGG
ACATAACGGGTGCAGTTATAGGTGCCGAAGAAGTTTACGTTCATCAGCTT
GTGGACATCCTGGACTGAGACCTCCTCGAACACACCGCAAATGGCCATTC
CGGCACAGTTTATTAAAGTGTATATGGGGCCGAAGCTATCTTCGATCTCG
CCAAGCACTTTGGCCACCTGGTCATAATCGCCGCTTATGTCCAGACTTCT
GTACTGGAACTTTTGATCTGGCCGCTGGCGAATCACTTCCATCAGAGCCA
CTGCTCCGCTCAGCATTTTCTCGTCGCGCGCTATCACCGTCACATTGGCG
CCTTTCATGGCGCACTCCACCGCCAGACAGAGTCCGATTCCCTTGGAGCC
GCCGGTGACCACCACATGACGACCCCAATGCTCCTCGGTTTCTTGGCCAT
GACGAACACG

BO04434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-PA 1011 CG10425-RA 102..1008 925..19 4535 100 Minus
CG10425-PA 1011 CG10425-RA 66..100 960..926 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-RA 1402 CG10425-RA 164..1106 960..19 4690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25261545..25262113 241..809 2845 100 Plus
3R 32079331 3R 25261259..25261481 19..241 1115 100 Plus
3R 32079331 3R 25262183..25262335 809..960 715 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 02:05:27 has no hits.

BO04434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:48 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-PA 66..1011 16..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:50 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-PA 66..1011 16..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:28 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 164..1118 8..960 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:55 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 164..1118 8..960 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:55 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25261247..25261480 8..240 98 <- Plus
3R 25261545..25262113 241..809 100 <- Plus
3R 25262184..25262335 810..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:28 Download gff for BO04434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21086969..21087202 8..240 98 <- Plus
arm_3R 21087267..21087835 241..809 100 <- Plus
arm_3R 21087906..21088057 810..960 99   Plus

BO04434.5prime Sequence

902 bp (780 high quality bases) assembled on 2005-12-01

> BO04434.5prime
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCC
TGAAGGGAAAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACC
ACTTTGGGTGGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCT
GC

BO04434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-PA 1011 CG10425-RA 1..886 17..902 4430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-RA 1402 CG10425-RA 98..984 16..902 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25261545..25262113 802..234 2845 100 Minus
3R 32079331 3R 25262183..25262401 234..16 1095 100 Minus
3R 32079331 3R 25261381..25261481 902..802 505 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:04:03 has no hits.

BO04434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:49 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:52 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:29:01 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 90..984 7..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:29 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 90..984 7..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:29 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25261381..25261480 803..902 100 <- Minus
3R 25261545..25262113 234..802 100 <- Minus
3R 25262184..25262409 7..233 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:29:01 Download gff for BO04434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21087906..21088131 7..233 98   Minus
arm_3R 21087103..21087202 803..902 100 <- Minus
arm_3R 21087267..21087835 234..802 100 <- Minus

BO04434.complete Sequence

1042 bp (1042 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629759

> BO04434.complete
GAAGTTATCAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGG
GCATTGCGGTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAG
AAACCGAGGAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAA
GGGAATCGGACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATG
TGACGGTGATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTG
ATGGAAGTGATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCT
GGACATAAGCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCG
AAGATAGCTTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCC
ATTTGCGGTGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGAT
GAACGTAAACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCA
AAATGAAGAAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCG
GCTATGTTTGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGC
CCTGAGAGCGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGG
TCAGCGTCACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAG
GAGGAGGAGAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGG
AGGTCTCATAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCC
TGAAGGGAAAATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACC
ACTTTGGGTGGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCT
GCACGCCATAGTTTTGGGACCACTGCGAATAGTTAGCTACGCTCTGCACA
AGTACTTCAATAGTGTTATACGCAAATGCGCTCGAGAGGATAAGGCCAAG
GCCACATCGCAAGTGGAGTCCAAGGCAAGCTTTCTAGACCAT

BO04434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-RA 1011 CG10425-PA 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-RA 1402 CG10425-RA 98..1106 16..1024 5045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25261545..25262113 802..234 2845 100 Minus
3R 32079331 3R 25261259..25261481 1024..802 1115 100 Minus
3R 32079331 3R 25262183..25262401 234..16 1095 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:02:06 has no hits.

BO04434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:41:06 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 1..1011 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:10:41 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 86..1114 7..1035 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:36 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 99..1106 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:41:06 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 86..1114 7..1035 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:23 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
CG10425-RA 99..1106 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:23 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25261256..25261480 803..1026 99 <- Minus
3R 25261545..25262113 234..802 100 <- Minus
3R 25262184..25262400 17..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:36 Download gff for BO04434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21086978..21087202 803..1026 99 <- Minus
arm_3R 21087267..21087835 234..802 100 <- Minus
arm_3R 21087906..21088122 17..233 100   Minus

BO04434.pep Sequence

Translation from 16 to 1042

> BO04434.pep
MELSWEIVFCVGIAVLVHVLVYVFVMAKKPRSIVGRHVVVTGGSKGIGLC
LAVECAMKGANVTVIARDEKMLSGAVALMEVIRQRPDQKFQYRSLDISGD
YDQVAKVLGEIEDSFGPIYTLINCAGMAICGVFEEVSVQDVHKLMNVNFF
GTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYGYGPYSATKYALRAMA
ETIAMESREHGVSVTLAMPCDTNTPGFEEEEKSKPRETKIISGGGGLIEP
EVMAKAILKDALKGKFTSTVGAESWLITTLGGALLPWDGFFTNLLHAIVL
GPLRIVSYALHKYFNSVIRKCAREDKAKATSQVESKASFLDH

BO04434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10425-PA 336 CG10425-PA 1..336 1..336 1723 100 Plus
CG15629-PA 325 CG15629-PA 49..247 28..227 209 29.1 Plus
CG7322-PC 242 CG7322-PC 5..177 33..219 195 31.6 Plus
CG7322-PB 242 CG7322-PB 5..177 33..219 195 31.6 Plus
CG7322-PA 242 CG7322-PA 5..177 33..219 195 31.6 Plus