Clone BO04436 Report

Search the DGRC for BO04436

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:44
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptUnc-76-RA
Protein status:BO04436.pep: validated full length
Sequenced Size:1456

Clone Sequence Records

BO04436.3prime Sequence

934 bp (846 high quality bases) assembled on 2005-12-01

> BO04436.3prime
ATGGTCTAGAAAGCTTGCTGTAGGGCAGAGCACCTTCAGGATGTAGTCCG
TAAGGAGGGCCGGAACCGTCGGGCTGTCCTCGTTGATGGCCTTGAGAATC
TTGATCAGGACCTGCAGAGACTGATTGTTGGGCGTGCCGTTCTCCAGGTG
ATACGGAATGACTGTGGTCAAGTACTTGGGCTCGGGACCCTGGAACTTGC
CGCGCTTCTTCTCCACATGGTACTGCCGCCTTTTGTTCTGAACGGCGAGG
AGCAGAGAGATGAACGAGTTCTTCAGCTCCTTCTCGAACTCCAGCTCGTC
GCGCAGGGCCAGCTCGTTGATCAACGTCTCGCTCAGCTCCTGGATCAGCA
CCTCCATCTCCATGTACAGCTCGTTCAGCTGTGTCGTGGTCAGATATTGC
AGTTTTTCCGCATAGAGGGGGGCGCCCAGCACCTCTCGCGCCTTCTCGAT
CACCTCCGAATCGCAGGTCTCCGGCTCGTCCAGCGGGCTCTCGGCCTCGT
CCATGATGTCGTCGATCTCCTTGATCACCTCCTCTACCGTCTTAATCGGC
TGGTCGTCCATGTCACCGTTCAAGCCGTTAAGGATGAGGGCGTGCATGTC
CAAATCGTTGGCCACCGCCTCGTCCTCACTGGTCAGATCGTTGAACTCAT
CGCCCGGAGTCTGGGCATCCAGGCCGGATCCGGATCCGGATCCCAAACCG
TTGGTGTGTGGATACGCCTGATGGCTCTGGTTGTGCAACTGCTGCTGCTG
GTTGCGATTCTGCTGCTGCTGCTTCGTGTGGTTCTGGCCCAGATTCAGTG
TGGGCATGTGCATCTGACGGGTGTACGACTTGGACCAGTCGATGGGCAGA
ATGTTGCCAAAGTTTCCTGTGATGGTCACCACATTTGGCATTCGTTCATG
ATCTCCTCCTGGCTGCGCACCTGCACCGGAGCCA

BO04436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3981-PB 1425 Unc-76-RB 564..1422 877..19 4295 100 Minus
CG3981-PA 1425 Unc-76-RA 564..1422 877..19 4295 100 Minus
CG3981-PB 1425 Unc-76-RB 506..563 934..877 290 100 Minus
CG3981-PA 1425 Unc-76-RA 506..563 934..877 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-RC 3825 CG3981-RC 1002..1918 934..19 4560 99.9 Minus
Unc-76-RA 2860 CG3981-RA 892..1808 934..19 4560 99.9 Minus
Unc-76-RB 2970 CG3981-RB 1002..1918 934..19 4560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2090978..2091450 877..405 2365 100 Minus
X 23542271 X 2091518..2091735 404..187 1090 100 Minus
X 23542271 X 2091801..2091891 189..99 455 100 Minus
X 23542271 X 2091962..2092041 98..19 400 100 Minus
X 23542271 X 2081611..2081659 934..886 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:44:53 has no hits.

BO04436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:52 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3981-PA 507..1425 15..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:55 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3981-PA 507..1425 15..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:52 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 1003..1923 13..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:29 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 1003..1923 13..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:29 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2081612..2081659 886..933 100 -> Minus
X 2090969..2091450 405..885 99 -> Minus
X 2091518..2091733 189..404 100 -> Minus
X 2091802..2091891 99..188 100 -> Minus
X 2091962..2092046 13..98 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:52 Download gff for BO04436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1975645..1975692 886..933 100 -> Minus
arm_X 1985002..1985483 405..885 99 -> Minus
arm_X 1985551..1985766 189..404 100 -> Minus
arm_X 1985835..1985924 99..188 100 -> Minus
arm_X 1985995..1986079 13..98 97   Minus

BO04436.5prime Sequence

835 bp (792 high quality bases) assembled on 2005-11-29

> BO04436.5prime
GAAGTTATCAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAA
AATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGC
TGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAA
TCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGC
TCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGA
GTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCA
GGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGG
GCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCC
GTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGA
GGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACT
ACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAG
GAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGG
CAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACA
TGCCCACACTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAAT
CGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACA
CACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGGATGCCCAGACTC
CGGGCGATGAGTTCAACGATCTGACCAGTGAGGAC

BO04436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3981-PB 1425 Unc-76-RB 1..819 17..835 4095 100 Plus
CG3981-PA 1425 Unc-76-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-RC 3825 CG3981-RC 496..1315 16..835 4100 100 Plus
Unc-76-RA 2860 CG3981-RA 386..1205 16..835 4100 100 Plus
Unc-76-RB 2970 CG3981-RB 496..1315 16..835 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2081105..2081659 16..570 2775 100 Plus
X 23542271 X 2090969..2091233 571..835 1325 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:05:54 has no hits.

BO04436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:52 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3981-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:57 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3981-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:30 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 492..1315 11..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:33:33 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 492..1315 11..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:33:33 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2081101..2081659 11..570 99 -> Plus
X 2090969..2091233 571..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:30 Download gff for BO04436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1975134..1975692 11..570 99 -> Plus
arm_X 1985002..1985266 571..835 100   Plus

BO04436.complete Sequence

1456 bp (1456 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629760

> BO04436.complete
GAAGTTATCAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAA
AATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGC
TGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAA
TCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGC
TCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGA
GTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCA
GGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGG
GCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCC
GTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGA
GGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACT
ACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAG
GAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGG
CAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACA
TGCCCACACTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAAT
CGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACA
CACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGGATGCCCAGACTC
CGGGCGATGAGTTCAACGATCTGACCAGTGAGGACGAGGCGGTGGCCAAC
GATTTGGACATGCACGCCCTCATCCTTAACGGCTTGAACGGTGACATGGA
CGACCAGCCGATTAAGACGGTAGAGGAGGTGATCAAGGAGATCGACGACA
TCATGGACGAGGCCGAGAGCCCGCTGGACGAGCCGGAGACCTGCGATTCG
GAGGTGATCGAGAAGGCGCGAGAGGTGCTGGGCGCCCCCCTCTATGCGGA
AAAACTGCAATATCTGACCACGACACAGCTGAACGAGCTGTACATGGAGA
TGGAGGTGCTGATCCAGGAGCTGAGCGAGACGTTGATCAACGAGCTGGCC
CTGCGCGACGAGCTGGAGTTCGAGAAGGAGCTGAAGAACTCGTTCATCTC
TCTGCTCCTCGCCGTTCAGAACAAAAGGCGGCAGTACCATGTGGAGAAGA
AGCGCGGCAAGTTCCAGGGTCCCGAGCCCAAGTACTTGACCACAGTCATT
CCGTATCACCTGGAGAACGGCACGCCCAACAATCAGTCTCTGCAGGTCCT
GATCAAGATTCTCAAGGCCATCAACGAGGACAGCCCGACGGTTCCGGCCC
TCCTTACGGACTACATCCTGAAGGTGCTCTGCCCTACAGCAAGCTTTCTA
GACCAT

BO04436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-RC 1425 CG3981-PC 1..1422 17..1438 7110 100 Plus
Unc-76-RA 1425 CG3981-PA 1..1422 17..1438 7110 100 Plus
Unc-76-RB 1425 CG3981-PB 1..1422 17..1438 7110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-RC 3825 CG3981-RC 496..1918 16..1438 7115 100 Plus
Unc-76-RA 2860 CG3981-RA 386..1808 16..1438 7115 100 Plus
Unc-76-RB 2970 CG3981-RB 496..1918 16..1438 7115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2081105..2081659 16..570 2775 100 Plus
X 23542271 X 2090969..2091450 571..1052 2410 100 Plus
X 23542271 X 2091518..2091735 1053..1270 1090 100 Plus
X 23542271 X 2091801..2091891 1268..1358 455 100 Plus
X 23542271 X 2091962..2092041 1359..1438 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:36:10 has no hits.

BO04436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:50 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 1..1425 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:31 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 385..1806 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:43 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 497..1918 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:51 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RA 380..1811 11..1444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:20 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-76-RB 497..1918 17..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:20 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
X 2081106..2081659 17..570 100 -> Plus
X 2090969..2091450 571..1052 100 -> Plus
X 2091518..2091733 1053..1268 100 -> Plus
X 2091802..2091891 1269..1358 100 -> Plus
X 2091962..2092041 1359..1440 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:43 Download gff for BO04436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1975139..1975692 17..570 100 -> Plus
arm_X 1985002..1985483 571..1052 100 -> Plus
arm_X 1985551..1985766 1053..1268 100 -> Plus
arm_X 1985835..1985924 1269..1358 100 -> Plus
arm_X 1985995..1986074 1359..1440 97   Plus

BO04436.pep Sequence

Translation from 16 to 1456

> BO04436.pep
MRDLGTKMAELKFEAPLAKFEETDEWGGCDFISSQNAINDTLNLNLKDSS
AGGKPDATKLRLLEDAVRDAHVSKNGGGVVGGGAGSISPNCNTLQGGSLI
EIGLSDVGLVPGEGAGVGLDGLEKRSLAVGDHVDNFTETFGGSLEDLVNT
FDEKITKCFGNYEENVEELAPVQVRSQEEIMNECQMWWTITGNFGNILPI
DWSKSYTRQMHMPTLNLGQNHTKQQQQNRNQQQQLHNQSHQAYPHTNGLG
SGSGSGLDAQTPGDEFNDLTSEDEAVANDLDMHALILNGLNGDMDDQPIK
TVEEVIKEIDDIMDEAESPLDEPETCDSEVIEKAREVLGAPLYAEKLQYL
TTTQLNELYMEMEVLIQELSETLINELALRDELEFEKELKNSFISLLLAV
QNKRRQYHVEKKRGKFQGPEPKYLTTVIPYHLENGTPNNQSLQVLIKILK
AINEDSPTVPALLTDYILKVLCPTASFLDH

BO04436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-76-PC 474 CG3981-PC 1..474 1..474 2468 100 Plus
Unc-76-PA 474 CG3981-PA 1..474 1..474 2468 100 Plus
Unc-76-PB 474 CG3981-PB 1..474 1..474 2468 100 Plus
Unc-76-PD 289 CG3981-PD 1..289 186..474 1508 100 Plus