Clone Sequence Records
BO04436.3prime Sequence
934 bp (846 high quality bases) assembled on 2005-12-01
> BO04436.3prime
ATGGTCTAGAAAGCTTGCTGTAGGGCAGAGCACCTTCAGGATGTAGTCCG
TAAGGAGGGCCGGAACCGTCGGGCTGTCCTCGTTGATGGCCTTGAGAATC
TTGATCAGGACCTGCAGAGACTGATTGTTGGGCGTGCCGTTCTCCAGGTG
ATACGGAATGACTGTGGTCAAGTACTTGGGCTCGGGACCCTGGAACTTGC
CGCGCTTCTTCTCCACATGGTACTGCCGCCTTTTGTTCTGAACGGCGAGG
AGCAGAGAGATGAACGAGTTCTTCAGCTCCTTCTCGAACTCCAGCTCGTC
GCGCAGGGCCAGCTCGTTGATCAACGTCTCGCTCAGCTCCTGGATCAGCA
CCTCCATCTCCATGTACAGCTCGTTCAGCTGTGTCGTGGTCAGATATTGC
AGTTTTTCCGCATAGAGGGGGGCGCCCAGCACCTCTCGCGCCTTCTCGAT
CACCTCCGAATCGCAGGTCTCCGGCTCGTCCAGCGGGCTCTCGGCCTCGT
CCATGATGTCGTCGATCTCCTTGATCACCTCCTCTACCGTCTTAATCGGC
TGGTCGTCCATGTCACCGTTCAAGCCGTTAAGGATGAGGGCGTGCATGTC
CAAATCGTTGGCCACCGCCTCGTCCTCACTGGTCAGATCGTTGAACTCAT
CGCCCGGAGTCTGGGCATCCAGGCCGGATCCGGATCCGGATCCCAAACCG
TTGGTGTGTGGATACGCCTGATGGCTCTGGTTGTGCAACTGCTGCTGCTG
GTTGCGATTCTGCTGCTGCTGCTTCGTGTGGTTCTGGCCCAGATTCAGTG
TGGGCATGTGCATCTGACGGGTGTACGACTTGGACCAGTCGATGGGCAGA
ATGTTGCCAAAGTTTCCTGTGATGGTCACCACATTTGGCATTCGTTCATG
ATCTCCTCCTGGCTGCGCACCTGCACCGGAGCCA
BO04436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3981-PB | 1425 | Unc-76-RB | 564..1422 | 877..19 | 4295 | 100 | Minus |
CG3981-PA | 1425 | Unc-76-RA | 564..1422 | 877..19 | 4295 | 100 | Minus |
CG3981-PB | 1425 | Unc-76-RB | 506..563 | 934..877 | 290 | 100 | Minus |
CG3981-PA | 1425 | Unc-76-RA | 506..563 | 934..877 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unc-76-RC | 3825 | CG3981-RC | 1002..1918 | 934..19 | 4560 | 99.9 | Minus |
Unc-76-RA | 2860 | CG3981-RA | 892..1808 | 934..19 | 4560 | 99.9 | Minus |
Unc-76-RB | 2970 | CG3981-RB | 1002..1918 | 934..19 | 4560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2090978..2091450 | 877..405 | 2365 | 100 | Minus |
X | 23542271 | X | 2091518..2091735 | 404..187 | 1090 | 100 | Minus |
X | 23542271 | X | 2091801..2091891 | 189..99 | 455 | 100 | Minus |
X | 23542271 | X | 2091962..2092041 | 98..19 | 400 | 100 | Minus |
X | 23542271 | X | 2081611..2081659 | 934..886 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:44:53 has no hits.
BO04436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:52 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3981-PA | 507..1425 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:55 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3981-PA | 507..1425 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:12:52 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 1003..1923 | 13..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:29 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 1003..1923 | 13..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:29 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2081612..2081659 | 886..933 | 100 | -> | Minus |
X | 2090969..2091450 | 405..885 | 99 | -> | Minus |
X | 2091518..2091733 | 189..404 | 100 | -> | Minus |
X | 2091802..2091891 | 99..188 | 100 | -> | Minus |
X | 2091962..2092046 | 13..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:12:52 Download gff for
BO04436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1975645..1975692 | 886..933 | 100 | -> | Minus |
arm_X | 1985002..1985483 | 405..885 | 99 | -> | Minus |
arm_X | 1985551..1985766 | 189..404 | 100 | -> | Minus |
arm_X | 1985835..1985924 | 99..188 | 100 | -> | Minus |
arm_X | 1985995..1986079 | 13..98 | 97 | | Minus |
BO04436.5prime Sequence
835 bp (792 high quality bases) assembled on 2005-11-29
> BO04436.5prime
GAAGTTATCAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAA
AATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGC
TGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAA
TCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGC
TCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGA
GTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCA
GGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGG
GCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCC
GTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGA
GGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACT
ACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAG
GAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGG
CAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACA
TGCCCACACTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAAT
CGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACA
CACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGGATGCCCAGACTC
CGGGCGATGAGTTCAACGATCTGACCAGTGAGGAC
BO04436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3981-PB | 1425 | Unc-76-RB | 1..819 | 17..835 | 4095 | 100 | Plus |
CG3981-PA | 1425 | Unc-76-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unc-76-RC | 3825 | CG3981-RC | 496..1315 | 16..835 | 4100 | 100 | Plus |
Unc-76-RA | 2860 | CG3981-RA | 386..1205 | 16..835 | 4100 | 100 | Plus |
Unc-76-RB | 2970 | CG3981-RB | 496..1315 | 16..835 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2081105..2081659 | 16..570 | 2775 | 100 | Plus |
X | 23542271 | X | 2090969..2091233 | 571..835 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:05:54 has no hits.
BO04436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:02:52 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3981-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:57 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3981-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:30 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 492..1315 | 11..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:33:33 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 492..1315 | 11..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:33:33 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2081101..2081659 | 11..570 | 99 | -> | Plus |
X | 2090969..2091233 | 571..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:30 Download gff for
BO04436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1975134..1975692 | 11..570 | 99 | -> | Plus |
arm_X | 1985002..1985266 | 571..835 | 100 | | Plus |
BO04436.complete Sequence
1456 bp (1456 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629760
> BO04436.complete
GAAGTTATCAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAA
AATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGC
TGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAA
TCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGC
TCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGA
GTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCA
GGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGG
GCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCC
GTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGA
GGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACT
ACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAG
GAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGG
CAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACA
TGCCCACACTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAAT
CGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGGCGTATCCACA
CACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGGATGCCCAGACTC
CGGGCGATGAGTTCAACGATCTGACCAGTGAGGACGAGGCGGTGGCCAAC
GATTTGGACATGCACGCCCTCATCCTTAACGGCTTGAACGGTGACATGGA
CGACCAGCCGATTAAGACGGTAGAGGAGGTGATCAAGGAGATCGACGACA
TCATGGACGAGGCCGAGAGCCCGCTGGACGAGCCGGAGACCTGCGATTCG
GAGGTGATCGAGAAGGCGCGAGAGGTGCTGGGCGCCCCCCTCTATGCGGA
AAAACTGCAATATCTGACCACGACACAGCTGAACGAGCTGTACATGGAGA
TGGAGGTGCTGATCCAGGAGCTGAGCGAGACGTTGATCAACGAGCTGGCC
CTGCGCGACGAGCTGGAGTTCGAGAAGGAGCTGAAGAACTCGTTCATCTC
TCTGCTCCTCGCCGTTCAGAACAAAAGGCGGCAGTACCATGTGGAGAAGA
AGCGCGGCAAGTTCCAGGGTCCCGAGCCCAAGTACTTGACCACAGTCATT
CCGTATCACCTGGAGAACGGCACGCCCAACAATCAGTCTCTGCAGGTCCT
GATCAAGATTCTCAAGGCCATCAACGAGGACAGCCCGACGGTTCCGGCCC
TCCTTACGGACTACATCCTGAAGGTGCTCTGCCCTACAGCAAGCTTTCTA
GACCAT
BO04436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unc-76-RC | 1425 | CG3981-PC | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Unc-76-RA | 1425 | CG3981-PA | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Unc-76-RB | 1425 | CG3981-PB | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unc-76-RC | 3825 | CG3981-RC | 496..1918 | 16..1438 | 7115 | 100 | Plus |
Unc-76-RA | 2860 | CG3981-RA | 386..1808 | 16..1438 | 7115 | 100 | Plus |
Unc-76-RB | 2970 | CG3981-RB | 496..1918 | 16..1438 | 7115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2081105..2081659 | 16..570 | 2775 | 100 | Plus |
X | 23542271 | X | 2090969..2091450 | 571..1052 | 2410 | 100 | Plus |
X | 23542271 | X | 2091518..2091735 | 1053..1270 | 1090 | 100 | Plus |
X | 23542271 | X | 2091801..2091891 | 1268..1358 | 455 | 100 | Plus |
X | 23542271 | X | 2091962..2092041 | 1359..1438 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:36:10 has no hits.
BO04436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:50 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RA | 1..1425 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:31 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RA | 385..1806 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:43 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 497..1918 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:51 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RA | 380..1811 | 11..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:20 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Unc-76-RB | 497..1918 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:20 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2081106..2081659 | 17..570 | 100 | -> | Plus |
X | 2090969..2091450 | 571..1052 | 100 | -> | Plus |
X | 2091518..2091733 | 1053..1268 | 100 | -> | Plus |
X | 2091802..2091891 | 1269..1358 | 100 | -> | Plus |
X | 2091962..2092041 | 1359..1440 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:43 Download gff for
BO04436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1975139..1975692 | 17..570 | 100 | -> | Plus |
arm_X | 1985002..1985483 | 571..1052 | 100 | -> | Plus |
arm_X | 1985551..1985766 | 1053..1268 | 100 | -> | Plus |
arm_X | 1985835..1985924 | 1269..1358 | 100 | -> | Plus |
arm_X | 1985995..1986074 | 1359..1440 | 97 | | Plus |
BO04436.pep Sequence
Translation from 16 to 1456
> BO04436.pep
MRDLGTKMAELKFEAPLAKFEETDEWGGCDFISSQNAINDTLNLNLKDSS
AGGKPDATKLRLLEDAVRDAHVSKNGGGVVGGGAGSISPNCNTLQGGSLI
EIGLSDVGLVPGEGAGVGLDGLEKRSLAVGDHVDNFTETFGGSLEDLVNT
FDEKITKCFGNYEENVEELAPVQVRSQEEIMNECQMWWTITGNFGNILPI
DWSKSYTRQMHMPTLNLGQNHTKQQQQNRNQQQQLHNQSHQAYPHTNGLG
SGSGSGLDAQTPGDEFNDLTSEDEAVANDLDMHALILNGLNGDMDDQPIK
TVEEVIKEIDDIMDEAESPLDEPETCDSEVIEKAREVLGAPLYAEKLQYL
TTTQLNELYMEMEVLIQELSETLINELALRDELEFEKELKNSFISLLLAV
QNKRRQYHVEKKRGKFQGPEPKYLTTVIPYHLENGTPNNQSLQVLIKILK
AINEDSPTVPALLTDYILKVLCPTASFLDH
BO04436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Unc-76-PC | 474 | CG3981-PC | 1..474 | 1..474 | 2468 | 100 | Plus |
Unc-76-PA | 474 | CG3981-PA | 1..474 | 1..474 | 2468 | 100 | Plus |
Unc-76-PB | 474 | CG3981-PB | 1..474 | 1..474 | 2468 | 100 | Plus |
Unc-76-PD | 289 | CG3981-PD | 1..289 | 186..474 | 1508 | 100 | Plus |